Clone FI17839 Report

Search the DGRC for FI17839

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:178
Well:39
Vector:pOT2
Associated Gene/TranscriptNC2alpha-RA
Protein status:FI17839.pep: gold
Sequenced Size:1233

Clone Sequence Records

FI17839.complete Sequence

1233 bp assembled on 2011-12-13

GenBank Submission: BT132912.1

> FI17839.complete
AAAAACACACACACATTTGTTTTATTTCACTAGGACTCTTGACGATTACT
TCACAAATCGGAAAATGCCATCGAAAAAGAAAAAATACAACGCACGCTTT
CCGGCGGGTCGCATCAAGAAGATCATGCAAAGCGACGAGGAAATCGGGAA
GGTGGCCCAGGCGGTGCCTGTTATCATCTCACGCACGCTGGAGCTCTTCG
TGGAGTCGCTGCTGACCAAGACGCTGCGCATCACGAATGCGCGCAACGCC
AAGACGCTATCGCCATCGCACATGAGGCAGTGTATCGTATCCGAGAAACG
CTTTGACTTCCTCAAGGAGCTGGTCCGCAACATACCCGACATCAGTGTGG
CCGAGGAGGCCGCCTACAACGAGGACGATGTGTTACGCAGCTCGCCAGAG
GAACAGTATCCAGATTCAGACACGCCATATGATCTTAGCCTGCCATCGAC
GTCAATGCGCTCGCAGGCGAACGGCACAGCTGCCTACATGCGCTCCATGA
GTCTGAACAACGGAGCCGGATCGGGCGGAGGAGCCGCAGCCACCAAGCGG
CAGTTTCAGTCGCAGCACTCCACCCAGGAAACTCCCACCACCAGCACCAC
CCTGCCCGCCAAGCTGGCCCGCTCCGGGTCCATGCCGGCCTACACGCCAC
GGGGCAGACCGCCCAATCACCTCAAGAAACAGTCGGTGCAGCTCGATACT
GCCATACCCGCCCCGATCTGCAACTACGAACTCAACAAGCCCATTGTCAA
GATCGACTACAGCCACGTGCAAATGCCGACGGCGAACCTGTGCACACCGG
ACGCCTCTGATTCTGGGTCAGGATCGGGCGCCGGATCTGGAGCTTTTAAC
TTCGACATAGCTGCTCCGGTGATCAATATCGATCTGACGAATATCGTGGC
CGGTGGAGCACCTGGCAGTGGTGTGCCCCCCGCCTCTATTGGATTACCAG
CGGCCACGCCGGGGGACAACAATAATGTGAACCAAATGGCTGGAAAGAGC
AGCGCTCCCATCATTCCAAAGGCCACAGCGGCATCAGCGACCCCCACTGA
AACCGTTTTCGAATTAGACGAAGACTATGACAATATTTGATTAGGATCTA
TGTGAATGCGCTTTTAAATTATTGATACATTAATATGTACTCTAGGTCTA
AGAAATCACAATAACATTTTTTGCAAAATAAAGACCATGCTGGATTTTAA
GCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI17839.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17556945..17558043 106..1204 5450 99.7 Plus
chr2R 21145070 chr2R 17556633..17556739 1..107 535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21670495..21671594 106..1205 5500 100 Plus
2R 25286936 2R 21670183..21670289 1..107 535 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:00:14 has no hits.

FI17839.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:00:54 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17556633..17556738 1..106 100 -> Plus
chr2R 17556946..17558043 107..1204 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-13 12:49:18 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 1..1026 65..1090 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:52:02 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 1..1026 65..1090 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:48:34 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 1..1026 65..1090 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-13 12:49:17 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 16..1219 1..1204 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:52:02 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 32..1235 1..1204 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:34 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 32..1235 1..1204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:54 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21670183..21670288 1..106 100 -> Plus
2R 21670496..21671593 107..1204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:54 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21670183..21670288 1..106 100 -> Plus
2R 21670496..21671593 107..1204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:54 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21670183..21670288 1..106 100 -> Plus
2R 21670496..21671593 107..1204 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:52:02 Download gff for FI17839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17557688..17557793 1..106 100 -> Plus
arm_2R 17558001..17559098 107..1204 100   Plus

FI17839.hyp Sequence

Translation from 0 to 1089

> FI17839.hyp
KTHTHLFYFTRTLDDYFTNRKMPSKKKKYNARFPAGRIKKIMQSDEEIGK
VAQAVPVIISRTLELFVESLLTKTLRITNARNAKTLSPSHMRQCIVSEKR
FDFLKELVRNIPDISVAEEAAYNEDDVLRSSPEEQYPDSDTPYDLSLPST
SMRSQANGTAAYMRSMSLNNGAGSGGGAAATKRQFQSQHSTQETPTTSTT
LPAKLARSGSMPAYTPRGRPPNHLKKQSVQLDTAIPAPICNYELNKPIVK
IDYSHVQMPTANLCTPDASDSGSGSGAGSGAFNFDIAAPVINIDLTNIVA
GGAPGSGVPPASIGLPAATPGDNNNVNQMAGKSSAPIIPKATAASATPTE
TVFELDEDYDNI*

FI17839.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
NC2alpha-PA 341 CG10318-PA 1..341 22..362 1742 100 Plus

FI17839.pep Sequence

Translation from 1 to 1089

> FI17839.pep
KTHTHLFYFTRTLDDYFTNRKMPSKKKKYNARFPAGRIKKIMQSDEEIGK
VAQAVPVIISRTLELFVESLLTKTLRITNARNAKTLSPSHMRQCIVSEKR
FDFLKELVRNIPDISVAEEAAYNEDDVLRSSPEEQYPDSDTPYDLSLPST
SMRSQANGTAAYMRSMSLNNGAGSGGGAAATKRQFQSQHSTQETPTTSTT
LPAKLARSGSMPAYTPRGRPPNHLKKQSVQLDTAIPAPICNYELNKPIVK
IDYSHVQMPTANLCTPDASDSGSGSGAGSGAFNFDIAAPVINIDLTNIVA
GGAPGSGVPPASIGLPAATPGDNNNVNQMAGKSSAPIIPKATAASATPTE
TVFELDEDYDNI*

FI17839.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13258-PA 347 GF13258-PA 1..347 22..362 1220 77.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22128-PA 342 GG22128-PA 1..342 22..362 1513 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22636-PA 357 GH22636-PA 1..357 22..362 1032 63.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
NC2alpha-PA 341 CG10318-PA 1..341 22..362 1742 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18330-PA 351 GI18330-PA 1..351 22..362 980 61.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10800-PA 316 GL10800-PA 1..316 22..362 1090 67.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10241-PA 316 GA10241-PA 1..316 22..362 1090 67.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15852-PA 336 GM15852-PA 1..336 22..362 1683 94.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11613-PA 343 GD11613-PA 1..343 22..362 1739 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19756-PA 350 GJ19756-PA 1..350 22..362 1039 63.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10735-PA 375 GK10735-PA 1..375 22..362 1001 62.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12211-PA 342 GE12211-PA 1..342 22..362 1557 95 Plus