Clone FI17841 Report

Search the DGRC for FI17841

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:178
Well:41
Vector:pOT2
Associated Gene/TranscriptCG3338-RA
Protein status:FI17841.pep: gold
Sequenced Size:2955

Clone Sequence Records

FI17841.complete Sequence

2955 bp assembled on 2012-01-18

GenBank Submission: BT133108.1

> FI17841.complete
CTGGTTTTCCACGAAGAGAATAACAATAACTTTTTTATACAAATAAATAA
GGATAAAGCGAGATGAGCGAGTCTGCGGTAGCGGTGGAGCCGGAAGAAAG
GATGGTTGCTAACAACAAAATCCATTTCTCCAAGGAGGTGAAGCAGGTCA
TCGACAAGGTTCTCAAAACGGACGATCCGATGGATGCGCCGGACTTCAAC
ACTGTGGACTACATCAACCAGCTCTTCCCCAACGAGCAATCGCTGGCCGG
TATTGATGAGACCATCCAAAAGATGCAGTGCGAGGTGTCCCTGATTGATG
ACAACATCCGATCCGTGGTTCGTGGCCAAACGAACACCGGCCAGGATGGA
CAACTGGCACTGTGCGAGGCTCAAAAGGTTATCAGCTCCCTGTTCAGCCA
CATCATCGACGTGAAGACCCGGGCGGAGCGCACCGAGGAAATGGTCAAGG
AGATAACCCGGGATATCAAGCAGCTGGACTGCGCCAAACGCAATCTAACC
GCTGCCATCACAACGCTGAATCACCTGCACATGCTGGTCGGTGGAATTGA
AAGTCTGAACAAATTGATCGAGCGGCGATCCTATGGTGAAATCCTTAATC
CCCTCCAGGCGATTACCGAAGTTAACCAGCACTTCCAGCAGTTCTCCGAC
ATCGAGGAAATCAAGAATCTCTCACAAAGCGTAGATAAGATACAGGTTAC
ACTGGCCCAGCAAATCACAGAGGATTTCAAGGAGGCGTTTTCAGCAAAGC
CATCGTCACAGAACCAACACCGTTTGGGTCTTAACCAGTTGGCCGATGCT
TGTAAAGTGATGTCCGTGCTGGATCCCAAAGTGAAGAAGGAGCTGCTCAA
GTGGTTTATTGCACAACAACTGGAGGAGTACACGCACTTGTTTCACGAGA
ATCAGGATATTGCCTGGCTGGACAAGATTGATAAGCGTTATGCCTGGCTT
AAGAGGCATCTGCTAGACTTCGAGGACAAGTATGGACCGGTGTTTCCACT
GGACTGGGAGGTCTCCGAGCGAATTACTGTGGAGTTTTGTCGACAGACAC
GCGAACAGCTGGCACAAATCATGGCCAAACGCACCAACGAAATCGATGTG
AGACTACTTTTGTTCGCCATCAACAAGACGCAGGCTTTTGAACAGCTGCT
TTCCAAGCGATTCACGGGCGTTACACTGGGTGCACAGCCGACGGATAAAG
CGAGAGTACTTGCTGAACCAACGACGACGGACGGTGCTGTGGGCTTAACC
GTTTTCCACGACCAAATCGGACAATGCTTTAAGCCGCACTTGGACATCTA
CATACGCAGCATCGACCGCAATCTTTCGGAGCTGATGGACAAGTTCGTAG
AGATGTCTCGGGAACCATACAAGTTCGCCGAGGCCAAGACCACCGTGTAC
CCCAGCTCTGGTGATCTATTCGTCTTTTACAAGAAGTGCATGGTGCAGTG
CAACCAGCTAAGCAACGAACAACCAATGTACGATCTGGCTTTGGTGTTTA
AAAAATATCTACGGGAGTACGCCTCCAAAGTGCTCGAGGGCAGCACACCC
AAGCTTGTGCCAGCCACCACTAGCAGCTCGATCGGTAAAAGTGTTTCGTT
ACTCACGCGCGATATGCAGAATCTATCAACGGCCGCTGGTCAGGTGTTTC
ACAATTTCCTCAAAGAGGGCGATACGCAGCGATTTGCAAGAGATGATCTG
GTGCGCATTTGTTGCGTTCTGACCACGGGTGAGTACTGTTTGGAGACGGT
CCAACAGCTGGAGGATAAACTGAAGGAAAAGGTGACTTCTGCATATGTCA
GCAAGATTGACATGAGCGAGGAAAAGGATGTCTTTCATAGAATCATTTCC
AACTGCATCCAACTTTTGGTCCAAGATCTAGAGGCTGGCTGCGAAGCTTC
GCTGCAGGCGATGGCCAAGGTGCAGTGGCAACACATTAACAACGTGGGCG
ACCAGAGCGCCTTCATCAGCAGCCTGTGCGGTAACTTTAAGCAGACAGTG
CCTACCATCAGGGACACGCTAGCCAGTTCGCGGAAGTATTTCACCCAGTT
CTGCCATCGCTTCGTCGCCGCCTTCATACCGAAGTTCATCAATGTGCTCT
ATCGCTGCAAACTAACCCTCTCGGATGGTTCCAACAATGTTCTGGGCTGC
GAGCAACTCTTGTTGGACACCCATTCGCTAAAGACGGCTTTATTAGAGCT
ACCTTCCGTGGGATCGAGTGTGAACCGCAAGGCGCCCACCAGTTACACCA
AAGTTGTGGTCAAGGACATGACTCGGGCCGAGATGATCATCAAGGTGGTG
ATGACGCCGGTACAGCCGCCGGCGCACTTCACTCAGCAAGTGCTTAAGCT
GCTGCCAGACATTACCATTGCGGAGTACCAAAAGATTCTGGATATGAAGG
CGGTCAAACGTGTGGATCAACTGCAACTGATTGATCTTTTCAAGCACACG
GCATCTGCAGCGGCTGTGAGTGGCTTAATAGAGCCAACTACTGGAGAGGA
GGAGACCCAAGGTGCAGAAACAGTAGTCGCAACTTCGGGGACCACAGACG
ATGCTGAAACCTCAGCAGTACCAACTGAAACAACAACGGCAACTTCCTCA
ACCCCCAAACGAGCCTTTATCTTCAGCGTGGGCAGCTTTACGGGAAGCGC
AGATAAAAATGCCGATGGAAGTTCCCAGACGGGCATCAGAAAGCTGGAAA
ACCTACTGAAAAAGCGCTTCCCCTAGTTAATATACGGCTACATCTTGAGA
AATCATTCCACTAAGTTAGCTTTAGTTTGACAATATCGGTTAATGATTAG
TTGCTTAATTTATTAGGTCTATCCGGTTTATATGGTTGGTATGTTTTAAG
ACAGCTATGGAACATTCGATTTTGTATTATTCGCAATCCATCCGCCTATT
TTAAATATTTTTTATTAAATGTCTGGCTTCTGTTAAACAAAAAAAAAAAA
AAAAA

FI17841.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4383225..4384401 1840..664 5750 99.2 Minus
chr2L 23010047 chr2L 4382065..4383165 2938..1838 5490 99.9 Minus
chr2L 23010047 chr2L 4384456..4384965 665..156 2550 100 Minus
chr2L 23010047 chr2L 4385021..4385180 160..1 800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4384085..4385261 1840..664 5885 100 Minus
2L 23513712 2L 4382921..4384025 2942..1838 5525 100 Minus
2L 23513712 2L 4385316..4385825 665..156 2550 100 Minus
2L 23513712 2L 4385881..4386040 160..1 800 100 Minus
Blast to na_te.dros performed 2019-03-15 12:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 74..175 2922..2820 116 61 Minus

FI17841.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:42:21 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4382065..4383162 1841..2938 97 <- Minus
chr2L 4383225..4384399 666..1840 99 <- Minus
chr2L 4384456..4384962 159..665 100 <- Minus
chr2L 4385023..4385180 1..158 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-18 12:09:55 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 1..2664 63..2726 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:57 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 1..2664 63..2726 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:07:58 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 1..2664 63..2726 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-18 12:09:55 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 23..2960 1..2938 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:57 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 23..2960 1..2938 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:07:58 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 23..2960 1..2938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:21 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4382925..4384022 1841..2938 100 <- Minus
2L 4384085..4385259 666..1840 100 <- Minus
2L 4385316..4385822 159..665 100 <- Minus
2L 4385883..4386040 1..158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:21 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4382925..4384022 1841..2938 100 <- Minus
2L 4384085..4385259 666..1840 100 <- Minus
2L 4385316..4385822 159..665 100 <- Minus
2L 4385883..4386040 1..158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:21 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4382925..4384022 1841..2938 100 <- Minus
2L 4384085..4385259 666..1840 100 <- Minus
2L 4385316..4385822 159..665 100 <- Minus
2L 4385883..4386040 1..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:57 Download gff for FI17841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4385883..4386040 1..158 100   Minus
arm_2L 4382925..4384022 1841..2938 100 <- Minus
arm_2L 4384085..4385259 666..1840 100 <- Minus
arm_2L 4385316..4385822 159..665 100 <- Minus

FI17841.pep Sequence

Translation from 62 to 2725

> FI17841.pep
MSESAVAVEPEERMVANNKIHFSKEVKQVIDKVLKTDDPMDAPDFNTVDY
INQLFPNEQSLAGIDETIQKMQCEVSLIDDNIRSVVRGQTNTGQDGQLAL
CEAQKVISSLFSHIIDVKTRAERTEEMVKEITRDIKQLDCAKRNLTAAIT
TLNHLHMLVGGIESLNKLIERRSYGEILNPLQAITEVNQHFQQFSDIEEI
KNLSQSVDKIQVTLAQQITEDFKEAFSAKPSSQNQHRLGLNQLADACKVM
SVLDPKVKKELLKWFIAQQLEEYTHLFHENQDIAWLDKIDKRYAWLKRHL
LDFEDKYGPVFPLDWEVSERITVEFCRQTREQLAQIMAKRTNEIDVRLLL
FAINKTQAFEQLLSKRFTGVTLGAQPTDKARVLAEPTTTDGAVGLTVFHD
QIGQCFKPHLDIYIRSIDRNLSELMDKFVEMSREPYKFAEAKTTVYPSSG
DLFVFYKKCMVQCNQLSNEQPMYDLALVFKKYLREYASKVLEGSTPKLVP
ATTSSSIGKSVSLLTRDMQNLSTAAGQVFHNFLKEGDTQRFARDDLVRIC
CVLTTGEYCLETVQQLEDKLKEKVTSAYVSKIDMSEEKDVFHRIISNCIQ
LLVQDLEAGCEASLQAMAKVQWQHINNVGDQSAFISSLCGNFKQTVPTIR
DTLASSRKYFTQFCHRFVAAFIPKFINVLYRCKLTLSDGSNNVLGCEQLL
LDTHSLKTALLELPSVGSSVNRKAPTSYTKVVVKDMTRAEMIIKVVMTPV
QPPAHFTQQVLKLLPDITIAEYQKILDMKAVKRVDQLQLIDLFKHTASAA
AVSGLIEPTTGEEETQGAETVVATSGTTDDAETSAVPTETTTATSSTPKR
AFIFSVGSFTGSADKNADGSSQTGIRKLENLLKKRFP*

FI17841.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24120-PA 897 GF24120-PA 1..897 1..887 4430 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24384-PA 887 GG24384-PA 1..887 1..887 4678 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13683-PA 893 GH13683-PA 1..893 1..887 4273 89.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Vps53-PA 887 CG3338-PA 1..887 1..887 4512 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17968-PA 894 GI17968-PA 18..894 15..887 4217 90.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15453-PA 859 GL15453-PA 1..859 1..887 4097 87.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17388-PA 897 GA17388-PA 1..897 1..887 4352 91.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18098-PA 887 GM18098-PA 1..887 1..887 4731 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22715-PA 887 GD22715-PA 1..887 1..887 4736 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16308-PA 893 GJ16308-PA 1..893 1..887 4242 89.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24695-PA 897 GK24695-PA 15..897 12..887 4238 89.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14748-PA 887 GE14748-PA 1..887 1..887 4697 98.1 Plus

FI17841.hyp Sequence

Translation from 62 to 2725

> FI17841.hyp
MSESAVAVEPEERMVANNKIHFSKEVKQVIDKVLKTDDPMDAPDFNTVDY
INQLFPNEQSLAGIDETIQKMQCEVSLIDDNIRSVVRGQTNTGQDGQLAL
CEAQKVISSLFSHIIDVKTRAERTEEMVKEITRDIKQLDCAKRNLTAAIT
TLNHLHMLVGGIESLNKLIERRSYGEILNPLQAITEVNQHFQQFSDIEEI
KNLSQSVDKIQVTLAQQITEDFKEAFSAKPSSQNQHRLGLNQLADACKVM
SVLDPKVKKELLKWFIAQQLEEYTHLFHENQDIAWLDKIDKRYAWLKRHL
LDFEDKYGPVFPLDWEVSERITVEFCRQTREQLAQIMAKRTNEIDVRLLL
FAINKTQAFEQLLSKRFTGVTLGAQPTDKARVLAEPTTTDGAVGLTVFHD
QIGQCFKPHLDIYIRSIDRNLSELMDKFVEMSREPYKFAEAKTTVYPSSG
DLFVFYKKCMVQCNQLSNEQPMYDLALVFKKYLREYASKVLEGSTPKLVP
ATTSSSIGKSVSLLTRDMQNLSTAAGQVFHNFLKEGDTQRFARDDLVRIC
CVLTTGEYCLETVQQLEDKLKEKVTSAYVSKIDMSEEKDVFHRIISNCIQ
LLVQDLEAGCEASLQAMAKVQWQHINNVGDQSAFISSLCGNFKQTVPTIR
DTLASSRKYFTQFCHRFVAAFIPKFINVLYRCKLTLSDGSNNVLGCEQLL
LDTHSLKTALLELPSVGSSVNRKAPTSYTKVVVKDMTRAEMIIKVVMTPV
QPPAHFTQQVLKLLPDITIAEYQKILDMKAVKRVDQLQLIDLFKHTASAA
AVSGLIEPTTGEEETQGAETVVATSGTTDDAETSAVPTETTTATSSTPKR
AFIFSVGSFTGSADKNADGSSQTGIRKLENLLKKRFP*

FI17841.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3338-PA 887 CG3338-PA 1..887 1..887 4512 100 Plus