Clone FI17843 Report

Search the DGRC for FI17843

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:178
Well:43
Vector:pOT2
Associated Gene/TranscriptNup75-RA
Protein status:FI17843.pep: gold
Sequenced Size:2153

Clone Sequence Records

FI17843.complete Sequence

2153 bp assembled on 2012-01-18

GenBank Submission: BT133096.1

> FI17843.complete
ATCGATAACAAGCAACGAATCGTTTAGAATTTATAAAGAAGAAAAACATA
AAGCCAACATGAGCGACAGCGGTGTTTTCGCCTTCGAGCTTGGCGATGAC
CTAGCCACACGCTGTGGCAATACACTCACTGGCGTCTTTGTGCCGGGCTC
ACGAATCGCACTCAGCGCCTACCGGCATGTGACGCACAGTTCGCGGGATG
AGCCCACAGAGAATGCTGGACAGGTTCCGGTGCTCATCTACATGGCGCAG
GAGTCGACGCTGTTCGACGAACCCGTTCTCCGCAGCGTACTCGCCGAGGC
GAATGCCACGTTCGCCACGCTGCAACAGTTGGGTTCGCGGGCCACACGTG
CCGAGTATGTGAATATATCCCGGGCATACAGGAGCATTGTGCGCTCATGC
CTGGAGAAGCTGGAGCAGGCAAAAAAATCGCCGGAGGTTCAGACAGATGA
GGCGCGCCTGCAACGCTTATGTGATGCCATCGTTGTGTTCTATGCGGCAG
AATGCCTGTGGCATCTCTTCGAGATTCTGTACATTCAGAGCAATCAGCTG
GTGGTGCCGCAGCTGCTCGACTGGGCGCGTTTCCACTCGCCGCACGCAGA
GGACAGAGCCACGGATCTACTGCTCATGGGAGAGGAGGCCAGCGAATCTG
ATGACTATTGGAGCATTGTCAAATCACTCATTATGCTGGGCGAAATAGAT
GTTACGAGAGCAGTTCTCTCGCAGAATCGCAAAGCTGGACAAACGAGCTT
CAAGGCGGCCGAACAGATCCTGAAGTCCATGCCAGTGTATCAAGAGGGCT
ATGCCCTGCAGAAGTTTCACTCGCAGTGGGAGTTCTGGCACGTGGATACG
GAACGCAAGATTCAGTCCGGCTTATTTGCCACGGAGCCGGAGCTGGAGCA
GTTGATTCGTCTGGTCGCCGGCGACAGCGAGCAGTGGGATGCTGGCATCA
AAGAGTCCCAGGATTTCTATGAATACCTGCCAGGATACCTGCTCTTTACC
AAGCCCACCTGCAAACCCTTTGAGCTGAAAATAGCGGCAGCCAAATGGCT
AAACCGATGGTGTCTTCTCCGGCCGGAAAGAGAGCAGTGCAGCATGAACC
GCATGGTTTCTCAGCTTATGGATCACGATCTTAGACTATTTATATACGAT
GCTCAAAAACTTAACGACACACACTGGTTCTCAACGCATTTGATTGATCT
TATCCATCATTGTGGTCAGCTGAAGAGCTATTTCGATCAGAACAACATCG
ATCTTCCGGCCCTGCGTCACTCAATGATCTATGAGTACGGCAGCTATCTG
ATGACGTCCCACAATATGTGGCAACTGGGCATCGACTATCTGGACTGTTG
CAAGCAGGAGGGTCAGGCGGCTATCGAGCTGCTTTTGCCCCGAATCACTT
TGCGCAGCGAGCGGCAAGCCACCAAGCTTATTAACCTGGCCAGGCAGCGC
GGGCTCATAAGCGTAGAACGGGAGATCTGCAAGGTGCTTTCAAAGCGATC
CTACGATAACGAGCGTTATGGAAACGCCCTGGAATGGGCCATTCGCTCCA
AGGATGTGCTGCTGGTTACGGCGGTAGCTGACTTTATTTTAAAGCATTAC
TCGAAAACTGGCTGCATGCTTTGCCCGGACACCATTGCCAATGTCGGTGG
CCGAATGTTTGCCTCACCGCGCTTGGTGTTTCTCTCCAAGTACTTTGAGT
TCTATGAGTTCTACCGTACCCGTGATTTTCTTTCTGCCTCCGAGCTGCTG
GTGAATCTTTTGGAATCCAAAATTACGCCAGACTACTTTTGGCCATCGTT
GCTCATCGATTCCATGCCACTGCTAGAGTCCAAAGATCCGAAGATCTTCG
CCAAGGAAACGGTGGCCATTCTGCATCACATTGAAACCGATCTGGTGCCC
ATCATCGAACGCGATGTGTCCAAATATGGAAAACACCACACAGAAACCGT
GTTCAAGGACTATCGGGTGGAGAACGTTGACGAAATCATGAACCTCCTGC
GCCTGGCCTGCGCACGCAATTTGGCCCGAGCATTGATCATTGAGAACACT
TTGCCCGTGGTGTGATTTTGAATGCATTTTTAATGTAATTTATTTTGTAT
TTTTCGCTTTTCCAATACATCGTAATTTGTTATAGAAAAAAAAAAAAAAA
AAA

FI17843.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14052974..14054136 1248..86 5785 99.8 Minus
chr2R 21145070 chr2R 14052567..14052916 1594..1245 1690 98.9 Minus
chr2R 21145070 chr2R 14051843..14052044 2135..1934 1010 100 Minus
chr2R 21145070 chr2R 14052309..14052501 1785..1593 935 99 Minus
chr2R 21145070 chr2R 14052104..14052251 1933..1786 725 99.3 Minus
chr2R 21145070 chr2R 14054193..14054278 86..1 415 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18165825..18166987 1248..86 5815 100 Minus
2R 25286936 2R 18165418..18165767 1594..1245 1735 99.7 Minus
2R 25286936 2R 18164693..18164895 2136..1934 1015 100 Minus
2R 25286936 2R 18165160..18165352 1785..1593 965 100 Minus
2R 25286936 2R 18164955..18165102 1933..1786 740 100 Minus
2R 25286936 2R 18167044..18167129 86..1 430 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:41:42 has no hits.

FI17843.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:42:24 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14052309..14052499 1595..1785 98 <- Minus
chr2R 14051843..14052044 1934..2135 100 <- Minus
chr2R 14052104..14052251 1786..1933 99 <- Minus
chr2R 14052567..14052912 1249..1594 99 <- Minus
chr2R 14052974..14054136 86..1248 99 <- Minus
chr2R 14054194..14054278 1..85 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-18 12:09:56 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
Nup75-RA 1..2007 59..2065 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:59 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
Nup75-RA 1..2007 59..2065 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:08:05 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
Nup75-RA 1..2007 59..2065 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-18 12:09:56 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
Nup75-RA 1..2135 1..2135 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:59 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
Nup75-RA 12..2146 1..2135 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:08:05 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
Nup75-RA 12..2146 1..2135 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:24 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18164694..18164895 1934..2135 100 <- Minus
2R 18164955..18165102 1786..1933 100 <- Minus
2R 18165160..18165350 1595..1785 100 <- Minus
2R 18165418..18165763 1249..1594 100 <- Minus
2R 18165825..18166987 86..1248 100 <- Minus
2R 18167045..18167129 1..85 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:24 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18164694..18164895 1934..2135 100 <- Minus
2R 18164955..18165102 1786..1933 100 <- Minus
2R 18165160..18165350 1595..1785 100 <- Minus
2R 18165418..18165763 1249..1594 100 <- Minus
2R 18165825..18166987 86..1248 100 <- Minus
2R 18167045..18167129 1..85 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:24 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18164694..18164895 1934..2135 100 <- Minus
2R 18164955..18165102 1786..1933 100 <- Minus
2R 18165160..18165350 1595..1785 100 <- Minus
2R 18165418..18165763 1249..1594 100 <- Minus
2R 18165825..18166987 86..1248 100 <- Minus
2R 18167045..18167129 1..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:59 Download gff for FI17843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14052199..14052400 1934..2135 100 <- Minus
arm_2R 14052460..14052607 1786..1933 100 <- Minus
arm_2R 14052665..14052855 1595..1785 100 <- Minus
arm_2R 14052923..14053268 1249..1594 100 <- Minus
arm_2R 14053330..14054492 86..1248 100 <- Minus
arm_2R 14054550..14054634 1..85 100   Minus

FI17843.hyp Sequence

Translation from 0 to 2064

> FI17843.hyp
SITSNESFRIYKEEKHKANMSDSGVFAFELGDDLATRCGNTLTGVFVPGS
RIALSAYRHVTHSSRDEPTENAGQVPVLIYMAQESTLFDEPVLRSVLAEA
NATFATLQQLGSRATRAEYVNISRAYRSIVRSCLEKLEQAKKSPEVQTDE
ARLQRLCDAIVVFYAAECLWHLFEILYIQSNQLVVPQLLDWARFHSPHAE
DRATDLLLMGEEASESDDYWSIVKSLIMLGEIDVTRAVLSQNRKAGQTSF
KAAEQILKSMPVYQEGYALQKFHSQWEFWHVDTERKIQSGLFATEPELEQ
LIRLVAGDSEQWDAGIKESQDFYEYLPGYLLFTKPTCKPFELKIAAAKWL
NRWCLLRPEREQCSMNRMVSQLMDHDLRLFIYDAQKLNDTHWFSTHLIDL
IHHCGQLKSYFDQNNIDLPALRHSMIYEYGSYLMTSHNMWQLGIDYLDCC
KQEGQAAIELLLPRITLRSERQATKLINLARQRGLISVEREICKVLSKRS
YDNERYGNALEWAIRSKDVLLVTAVADFILKHYSKTGCMLCPDTIANVGG
RMFASPRLVFLSKYFEFYEFYRTRDFLSASELLVNLLESKITPDYFWPSL
LIDSMPLLESKDPKIFAKETVAILHHIETDLVPIIERDVSKYGKHHTETV
FKDYRVENVDEIMNLLRLACARNLARALIIENTLPVV*

FI17843.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Nup75-PA 668 CG5733-PA 1..668 20..687 3477 100 Plus

FI17843.pep Sequence

Translation from 1 to 2064

> FI17843.pep
SITSNESFRIYKEEKHKANMSDSGVFAFELGDDLATRCGNTLTGVFVPGS
RIALSAYRHVTHSSRDEPTENAGQVPVLIYMAQESTLFDEPVLRSVLAEA
NATFATLQQLGSRATRAEYVNISRAYRSIVRSCLEKLEQAKKSPEVQTDE
ARLQRLCDAIVVFYAAECLWHLFEILYIQSNQLVVPQLLDWARFHSPHAE
DRATDLLLMGEEASESDDYWSIVKSLIMLGEIDVTRAVLSQNRKAGQTSF
KAAEQILKSMPVYQEGYALQKFHSQWEFWHVDTERKIQSGLFATEPELEQ
LIRLVAGDSEQWDAGIKESQDFYEYLPGYLLFTKPTCKPFELKIAAAKWL
NRWCLLRPEREQCSMNRMVSQLMDHDLRLFIYDAQKLNDTHWFSTHLIDL
IHHCGQLKSYFDQNNIDLPALRHSMIYEYGSYLMTSHNMWQLGIDYLDCC
KQEGQAAIELLLPRITLRSERQATKLINLARQRGLISVEREICKVLSKRS
YDNERYGNALEWAIRSKDVLLVTAVADFILKHYSKTGCMLCPDTIANVGG
RMFASPRLVFLSKYFEFYEFYRTRDFLSASELLVNLLESKITPDYFWPSL
LIDSMPLLESKDPKIFAKETVAILHHIETDLVPIIERDVSKYGKHHTETV
FKDYRVENVDEIMNLLRLACARNLARALIIENTLPVV*

FI17843.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12278-PA 668 GF12278-PA 1..667 20..686 2970 79.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20987-PA 668 GG20987-PA 1..668 20..687 3343 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20846-PA 679 GH20846-PA 1..677 20..685 2393 64.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Nup75-PA 668 CG5733-PA 1..668 20..687 3477 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20950-PA 679 GI20950-PA 1..675 20..683 2566 68.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10512-PA 668 GL10512-PA 1..666 20..685 2780 73.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19092-PA 668 GA19092-PA 1..666 20..685 2771 73.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19922-PA 662 GM19922-PA 1..662 20..687 3420 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Nup75-PA 428 GD25411-PA 1..428 260..687 2261 95.8 Plus
Dsim\GD15219-PA 136 GD15219-PA 1..136 20..155 689 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20672-PA 679 GJ20672-PA 1..679 20..687 2607 69.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20632-PA 671 GK20632-PA 2..669 22..684 2564 69.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13930-PA 668 GE13930-PA 1..668 20..687 3349 92.7 Plus