Clone FI17860 Report

Search the DGRC for FI17860

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:178
Well:60
Vector:pOT2
Associated Gene/TranscriptCG12164-RA
Protein status:FI17860.pep: gold
Sequenced Size:1391

Clone Sequence Records

FI17860.complete Sequence

1391 bp assembled on 2011-12-09

GenBank Submission: BT132904.1

> FI17860.complete
CACATATCAGCTCCTTCTGTTTTAACGCGCTGTTGGTGGTGCAAGGGATA
CCAAGCATGAGATCCCTAAGTCTGTTGCTACTCAGCGCCAGCTGCGCGCT
AATCATAAGCTTAGCCTACGCCCATCCCCCCGAGGGAGTGTGGAAGAAGA
AGCTCACCTGGAAGGAGGATTGGGTCCAGGTGTGGAAGACCGTTAAGAAG
GAGGCGTGGGAAACCAAGTGGAAGAAGGTTTCGGTCCCAATATGGAAGGA
AGTCAAGGTTCCCGTCTGGAAGGAGGAGAAGGTTCCCGACTGGAAGATCG
TAAAGAAGCCGAAAATTGAGGAGAGAGAGGTGCCTGCCTGGAAGGAGGTT
AAGGTGGCCGAATGGAAGAAGATAACGAAACCCATTTGGGTGCCCACAAA
GGTCGCCGTCTGGAAGGAAATCCAGGTGCCCATTTGGAAGGAAGTGCAGG
TCCCGTACTGGAAGGAAATACAAGTGCCCATTTGGAAGGAAGTACAGGTC
GCAGACTGGAAGCAAATGTTTGAGCCCCAATGGGTGAAAATGGGCATTCC
CGGCGAAAAGTTCTTGGGTAAGGACCACGAGGGCTGGGAGTACACCAGCC
ACGATCTCTGGCGCAAGAAGCTGATCTGGAAGCCCGTGTGGAAGAAGGTC
TGGCGCACCGAGAAGAAGCAGGAGTGGAAGACCGAGAAGAAGCAGGAGTG
GCGCACCGAGAAGAAGCAGGAATGGAAGACGGAGAAGGTGCAGGAGTGGA
AGCAGGACAAGAAGCTGGAGTGGAAGGACGAGTGGATCCAGGTGTGGAAG
CCCGTGAAGAAACAAATCTGGATTAAGGAGAAGCGCGAGACCTGGATCGA
GGAGAAGGTTCAGATCTGGCGCACCGAGAAGCGCCAGGTGTGGGCCACCG
AGAAGCGGCAGGCGTGGAAGGACGAGTGGCAGTCGGTCAACGTGCCCGTC
TGGAAGGAGGTCAAGGTGCAGGAGTGGAAGAAGGTGTGGAAGCCCGTCTG
GGAGAAGGTGTGGGTGCCAGTGAGCCATGGCCACGGATGGGACTAGGTCC
GCGGCAGGAGTCTCCGCTTGGCCACCAGCCAAGCGACAGCACTGATATCT
GATAACTGCTCCCGCTGATCCTGCTAATCCCTTGGGGTTTGCCCCATCCT
CCGCAGATCACGATCCCCACTCAAATTGTTACATAGACTTAATGTTGTAA
GGCATCCCACTTCCTCCTGCATTTTGTACAAAACACCTTTCATACCTTTC
GTTATCTGTTGGATTTACCCATACCCCGCCTCCTTCATCGCCGTCTCCCA
CAAGTGTACAAATTAGTCATGCGCGCGTTTGTCTTTAAGTTATACGAAAT
TCAATAAAACAACAAAAACAATAAAAAAAAAAAAAAAAAAA

FI17860.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3199880..3200719 533..1372 4200 100 Plus
chr2R 21145070 chr2R 3199548..3199827 256..535 1400 100 Plus
chr2R 21145070 chr2R 3199305..3199487 77..259 915 100 Plus
chr2R 21145070 chr2R 3198801..3198877 1..77 385 100 Plus
chr2R 21145070 chr2R 3200004..3200099 681..776 225 82.3 Plus
chr2R 21145070 chr2R 3200028..3200123 657..752 225 82.3 Plus
chr2R 21145070 chr2R 3199974..3200100 675..801 215 78 Plus
chr2R 21145070 chr2R 3200022..3200148 627..753 215 78 Plus
chr2R 21145070 chr2R 3199702..3199761 458..517 195 88.3 Plus
chr2R 21145070 chr2R 3199750..3199809 410..469 195 88.3 Plus
chr2R 21145070 chr2R 12681153..12681215 605..543 195 87.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7312506..7313347 533..1374 4210 100 Plus
2R 25286936 2R 7312174..7312453 256..535 1400 100 Plus
2R 25286936 2R 7311931..7312113 77..259 915 100 Plus
2R 25286936 2R 7311427..7311503 1..77 385 100 Plus
2R 25286936 2R 7312630..7312725 681..776 225 82.3 Plus
2R 25286936 2R 7312654..7312749 657..752 225 82.3 Plus
2R 25286936 2R 7312600..7312726 675..801 215 78 Plus
2R 25286936 2R 7312648..7312774 627..753 215 78 Plus
2R 25286936 2R 7312328..7312387 458..517 195 88.3 Plus
2R 25286936 2R 7312376..7312435 410..469 195 88.3 Plus
2R 25286936 2R 16793966..16794028 605..543 195 87.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7313705..7314546 533..1374 4210 100 Plus
2R 25260384 2R 7313373..7313652 256..535 1400 100 Plus
2R 25260384 2R 7313130..7313312 77..259 915 100 Plus
2R 25260384 2R 7312626..7312702 1..77 385 100 Plus
2R 25260384 2R 16795165..16795227 605..543 195 87.3 Minus
Blast to na_te.dros performed on 2019-03-15 11:59:26 has no hits.

FI17860.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:00:28 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3198801..3198877 1..77 100 -> Plus
chr2R 3199306..3199485 78..257 100 -> Plus
chr2R 3199550..3199825 258..533 100 -> Plus
chr2R 3199881..3200006 534..659 100 == Plus
chr2R 3200130..3200699 783..1352 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-09 08:49:17 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 1..990 57..1046 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:51:27 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 1..990 57..1046 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:47:37 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 1..990 57..1046 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 08:49:17 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 20..1371 1..1352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:51:27 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 33..1384 1..1352 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:47:37 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 33..1384 1..1352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:28 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7311427..7311503 1..77 100 -> Plus
2R 7311932..7312111 78..257 100 -> Plus
2R 7312176..7312451 258..533 100 -> Plus
2R 7312507..7313325 534..1352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:28 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7311427..7311503 1..77 100 -> Plus
2R 7311932..7312111 78..257 100 -> Plus
2R 7312176..7312451 258..533 100 -> Plus
2R 7312507..7313325 534..1352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:28 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7311427..7311503 1..77 100 -> Plus
2R 7311932..7312111 78..257 100 -> Plus
2R 7312176..7312451 258..533 100 -> Plus
2R 7312507..7313325 534..1352 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:51:27 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3198932..3199008 1..77 100 -> Plus
arm_2R 3199437..3199616 78..257 100 -> Plus
arm_2R 3199681..3199956 258..533 100 -> Plus
arm_2R 3200012..3200830 534..1352 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:52:12 Download gff for FI17860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7313375..7313650 258..533 100 -> Plus
2R 7313706..7314524 534..1352 100   Plus
2R 7312626..7312702 1..77 100 -> Plus
2R 7313131..7313310 78..257 100 -> Plus

FI17860.hyp Sequence

Translation from 2 to 1045

> FI17860.hyp
HISSFCFNALLVVQGIPSMRSLSLLLLSASCALIISLAYAHPPEGVWKKK
LTWKEDWVQVWKTVKKEAWETKWKKVSVPIWKEVKVPVWKEEKVPDWKIV
KKPKIEEREVPAWKEVKVAEWKKITKPIWVPTKVAVWKEIQVPIWKEVQV
PYWKEIQVPIWKEVQVADWKQMFEPQWVKMGIPGEKFLGKDHEGWEYTSH
DLWRKKLIWKPVWKKVWRTEKKQEWKTEKKQEWRTEKKQEWKTEKVQEWK
QDKKLEWKDEWIQVWKPVKKQIWIKEKRETWIEEKVQIWRTEKRQVWATE
KRQAWKDEWQSVNVPVWKEVKVQEWKKVWKPVWEKVWVPVSHGHGWD*

FI17860.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12164-PB 329 CG12164-PB 1..329 19..347 1888 100 Plus
CG12164-PA 329 CG12164-PA 1..329 19..347 1888 100 Plus
CG15615-PB 363 CG15615-PB 74..272 39..289 606 44.2 Plus
CG15615-PB 363 CG15615-PB 75..279 106..344 385 33.5 Plus

FI17860.pep Sequence

Translation from 2 to 1045

> FI17860.pep
HISSFCFNALLVVQGIPSMRSLSLLLLSASCALIISLAYAHPPEGVWKKK
LTWKEDWVQVWKTVKKEAWETKWKKVSVPIWKEVKVPVWKEEKVPDWKIV
KKPKIEEREVPAWKEVKVAEWKKITKPIWVPTKVAVWKEIQVPIWKEVQV
PYWKEIQVPIWKEVQVADWKQMFEPQWVKMGIPGEKFLGKDHEGWEYTSH
DLWRKKLIWKPVWKKVWRTEKKQEWKTEKKQEWRTEKKQEWKTEKVQEWK
QDKKLEWKDEWIQVWKPVKKQIWIKEKRETWIEEKVQIWRTEKRQVWATE
KRQAWKDEWQSVNVPVWKEVKVQEWKKVWKPVWEKVWVPVSHGHGWD*

FI17860.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12706-PA 329 GF12706-PA 1..329 19..347 1510 97.3 Plus
Dana\GF13445-PA 354 GF13445-PA 79..263 45..281 414 45.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23272-PA 329 GG23272-PA 1..329 19..347 1521 99.4 Plus
Dere\GG22241-PA 366 GG22241-PA 83..267 45..281 413 46 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21529-PA 330 GH21529-PA 1..330 19..347 1348 91.5 Plus
Dgri\GH21530-PA 354 GH21530-PA 96..255 111..274 424 60.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12164-PB 329 CG12164-PB 1..329 19..347 1888 100 Plus
CG12164-PA 329 CG12164-PA 1..329 19..347 1888 100 Plus
CG15615-PB 363 CG15615-PB 74..272 39..289 606 44.2 Plus
CG15615-PB 363 CG15615-PB 75..279 106..344 385 33.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19500-PA 329 GI19500-PA 1..329 19..347 1383 93 Plus
Dmoj\GI19502-PA 359 GI19502-PA 80..257 45..274 426 47.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11161-PA 329 GL11161-PA 1..329 19..347 1430 95.1 Plus
Dper\GL16731-PA 368 GL16731-PA 87..234 45..242 372 46.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11448-PA 329 GA11448-PA 1..329 19..347 1430 95.1 Plus
Dpse\GA13849-PA 1102 GA13849-PA 838..1001 124..339 407 48.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20945-PA 329 GM20945-PA 1..329 19..347 1519 99.1 Plus
Dsec\GM20030-PA 363 GM20030-PA 80..257 45..274 405 46.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15340-PA 329 GD15340-PA 1..329 19..347 1524 99.4 Plus
Dsim\GD15342-PA 177 GD15342-PA 8..177 178..347 792 99.4 Plus
Dsim\GD25514-PA 361 GD25514-PA 83..260 45..274 415 47 Plus
Dsim\GD15342-PA 177 GD15342-PA 1..177 19..191 178 34.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21071-PA 445 GJ21071-PA 1..362 19..340 933 64.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21800-PA 333 GK21800-PA 1..333 19..347 1396 94.6 Plus
Dwil\GK21802-PA 346 GK21802-PA 92..258 111..281 421 58.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19120-PA 329 GE19120-PA 1..329 19..347 1520 99.1 Plus
Dyak\GE14034-PA 361 GE14034-PA 82..259 45..274 414 47 Plus