Clone FI17863 Report

Search the DGRC for FI17863

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:178
Well:63
Vector:pOT2
Associated Gene/TranscriptSin-RC
Protein status:FI17863.pep: gold
Sequenced Size:1679

Clone Sequence Records

FI17863.complete Sequence

1679 bp assembled on 2011-12-09

GenBank Submission: BT132907.1

> FI17863.complete
TTTAGGCGTGCACCGTCGGCAGACAAAACTATCAAATCGAAATTTAAATT
ATGGAAGACGAGGACGATCCCGTCGTGGAGGAGGTGAGTATGTGAGTGGC
ACTATTATTACCATGAGAACAATGCCCGCCCATCCCCACCAGATTCCCGT
ATTCCTGTCGAAGAACCTGAGGGACAGCCTGTATCTCTTTCAATACCCCA
CGAAAACGGAGCTCCCCAACCACGATGACTCCGTGATTGTCAATTGTTGT
GTAAAACCAATCGCCCAGGAGGTGAAGGTGGACTTCGGCCTGGACATTGA
GTCGGCCCACTTCGATCGCTTCAAGGGCGAGCAATTTGCGGTGGCCGCCG
ACGGAAAGAACACCTATGGAGCAGTTCCACCAAAGGGTCAGGAGCGACCC
ACCTACAAACGTGGCATCATGGACAAACAGGCCTTCACAAGCTCGCGTTC
CATAACCGATGTGGCCAAGTACATAGTGGGCATCTTTACGGATCGGGAGG
TGCATCTGTCGCCACTTACATCCATAGTCCAAATGCGACCCGTTCTCAGT
CACTTCGATAAGGACGACAAGCGCAAGAAGGCGGAACTGAAGGCTCAAAC
GGAGGACACGGACGATGACGAGGTGCTGCAGCAGGTCACGGTTAAATTTG
CACGAGGAAATGCCAAAAACAGCGGAAAGGAGCAACGTGTCGGCACCTAC
GACAGTTTCGTCCAGCGAATTGCGGATGAGCCGTGGTGCGAGGCCTACTG
GCACTCGAGGGGCACGCCCACCGCCGAACTGGAGCGCCAGAAGCTCTTTG
CCACCAGTCATCACGGCAGTTCCTCTTTGGCTCTCGCTCCTGACGAATAT
CTTCGAAAGCTTCTGCCCTACGACGAGCATGTGCAGACGGTAGCCCCAGC
AGCTGCTTCTGCTGCCGCCCAAGTACTTCCCGTCTACAACAAGGCCATGC
TTAAGTCTATGCCGCTGCTGGAACAGCTTACAGTGCTACTGAGAGATGCG
CGGATGCTCTCGTTCAGCGACGTCATTAGTATTCTCGCGGAGCACGTGGA
TCCGCATGTGGCTGCCGACAAGGTGCTGGCTTTGCTGCCCCAGGTGGGCA
TCCTACTGCACGGCAACTGGGTGCCGAAATCCGAGGTGGTCTTTCCCGAG
AAGGTGCTTTCCCATGCGAACGGTGTGTCCGCAGAGCAGATGATTCGCGC
CAGAGATTATATACTCTTTCGTTTCTCCCGCACGCCCTACCTGTTCCGAG
CTCAGGTAATGGCCGCCACCCAGTTACCTCCTGCGGAAACACTTGACGTT
TTGAAGACTGTGGCCCGGGTGAATAACACAAAACGGTGGGAGCTGCTACT
GCCACCCGACAAGGAGTTCGAGCAAAAGTACCCGGAACTGGTCAGCCGAC
AGGAGTACCACTGGACCGCTTCCGAGCAGCACTACAATGAAATGGACTGG
GCTAGGGAAACCAAACGTGTTCGGAAACGTTCGACGAGGAAGAGCGAATC
CCAGTCACTGACTTCAGCCATGCCGCCGCCCGCAATGAATCACTCAACAA
CTGGCTCCGTGGATGCGTAGCATCGGATGATGATCTCCCAGCGGCGGAGA
ATCGGCAGCACGATTATACATCTAGGCACTATTAAAAAGACCAACAATTT
TACTTTGTTAAAAAAAAAAAAAAAAAAAA

FI17863.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21020848..21022060 1..1213 6065 100 Plus
chr3L 24539361 chr3L 21022125..21022570 1214..1659 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21031839..21033051 1..1213 6065 100 Plus
3L 28110227 3L 21033116..21033564 1214..1662 2245 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21024939..21026151 1..1213 6065 100 Plus
3L 28103327 3L 21026216..21026664 1214..1662 2245 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:59:43 has no hits.

FI17863.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:00:37 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21020848..21022060 1..1213 100 -> Plus
chr3L 21022125..21022570 1214..1659 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-12-09 09:31:57 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RC 1..1458 113..1570 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:51:45 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RC 1..1458 113..1570 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:47:56 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RC 1..1458 113..1570 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 09:31:56 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RC 1..1659 1..1659 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:51:45 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RC 15..1673 1..1659 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:47:56 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RC 15..1673 1..1659 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:37 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21031839..21033051 1..1213 100 -> Plus
3L 21033116..21033561 1214..1659 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:37 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21031839..21033051 1..1213 100 -> Plus
3L 21033116..21033561 1214..1659 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:00:37 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21031839..21033051 1..1213 100 -> Plus
3L 21033116..21033561 1214..1659 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:51:45 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21024939..21026151 1..1213 100 -> Plus
arm_3L 21026216..21026661 1214..1659 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:52:19 Download gff for FI17863.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21024939..21026151 1..1213 100 -> Plus
3L 21026216..21026661 1214..1659 100   Plus

FI17863.hyp Sequence

Translation from 0 to 1569

> FI17863.hyp
LGVHRRQTKLSNRNLNYGRRGRSRRGGGEYVSGTIITMRTMPAHPHQIPV
FLSKNLRDSLYLFQYPTKTELPNHDDSVIVNCCVKPIAQEVKVDFGLDIE
SAHFDRFKGEQFAVAADGKNTYGAVPPKGQERPTYKRGIMDKQAFTSSRS
ITDVAKYIVGIFTDREVHLSPLTSIVQMRPVLSHFDKDDKRKKAELKAQT
EDTDDDEVLQQVTVKFARGNAKNSGKEQRVGTYDSFVQRIADEPWCEAYW
HSRGTPTAELERQKLFATSHHGSSSLALAPDEYLRKLLPYDEHVQTVAPA
AASAAAQVLPVYNKAMLKSMPLLEQLTVLLRDARMLSFSDVISILAEHVD
PHVAADKVLALLPQVGILLHGNWVPKSEVVFPEKVLSHANGVSAEQMIRA
RDYILFRFSRTPYLFRAQVMAATQLPPAETLDVLKTVARVNNTKRWELLL
PPDKEFEQKYPELVSRQEYHWTASEQHYNEMDWARETKRVRKRSTRKSES
QSLTSAMPPPAMNHSTTGSVDA*

FI17863.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Sin-PC 485 CG10582-PC 1..485 38..522 2515 100 Plus
Sin-PA 486 CG10582-PA 11..486 47..522 2458 99.8 Plus

FI17863.pep Sequence

Translation from 1 to 1569

> FI17863.pep
LGVHRRQTKLSNRNLNYGRRGRSRRGGGEYVSGTIITMRTMPAHPHQIPV
FLSKNLRDSLYLFQYPTKTELPNHDDSVIVNCCVKPIAQEVKVDFGLDIE
SAHFDRFKGEQFAVAADGKNTYGAVPPKGQERPTYKRGIMDKQAFTSSRS
ITDVAKYIVGIFTDREVHLSPLTSIVQMRPVLSHFDKDDKRKKAELKAQT
EDTDDDEVLQQVTVKFARGNAKNSGKEQRVGTYDSFVQRIADEPWCEAYW
HSRGTPTAELERQKLFATSHHGSSSLALAPDEYLRKLLPYDEHVQTVAPA
AASAAAQVLPVYNKAMLKSMPLLEQLTVLLRDARMLSFSDVISILAEHVD
PHVAADKVLALLPQVGILLHGNWVPKSEVVFPEKVLSHANGVSAEQMIRA
RDYILFRFSRTPYLFRAQVMAATQLPPAETLDVLKTVARVNNTKRWELLL
PPDKEFEQKYPELVSRQEYHWTASEQHYNEMDWARETKRVRKRSTRKSES
QSLTSAMPPPAMNHSTTGSVDA*

FI17863.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24293-PA 490 GF24293-PA 11..486 47..519 2091 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16156-PA 486 GG16156-PA 11..486 47..522 2507 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14565-PA 483 GH14565-PA 11..476 47..511 1869 74.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sin-PC 485 CG10582-PC 1..485 38..522 2515 100 Plus
Sin-PA 486 CG10582-PA 11..486 47..522 2458 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13892-PA 480 GI13892-PA 11..480 47..518 1919 75.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24473-PA 115 GL24473-PA 11..114 47..150 453 76 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10413-PA 476 GA10413-PA 11..469 47..511 1947 76.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22337-PA 486 GM22337-PA 11..486 47..522 2518 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14927-PA 486 GD14927-PA 11..486 47..522 2525 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11746-PA 480 GJ11746-PA 11..478 47..516 1958 76.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25406-PA 482 GK25406-PA 13..475 47..513 1923 75.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19724-PA 487 GE19724-PA 11..487 47..522 2510 98.3 Plus