Clone FI17904 Report

Search the DGRC for FI17904

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:179
Well:4
Vector:pOT2
Associated Gene/TranscriptCG34404-RC
Protein status:FI17904.pep: gold
Sequenced Size:2890

Clone Sequence Records

FI17904.complete Sequence

2890 bp assembled on 2012-01-18

GenBank Submission: BT133097.1

> FI17904.complete
TTTCTGATAAGAATGCAATAAATATCCCGACTGGTTGGAGTAATTTCGAG
TTTTTGAATTAAAAATGCCTTAAGAAAAGTTTTTAATGAGCCATGTAGAG
TTAACACCAGTGCCACATATCCTGGGAATGGAGCACCAATCAAAAGTCAT
CATCAAGCGGCCCAAATCAGGCCAATTCTAGTCGGAAAGTCGTTGCAGCC
GCCCATTGCCACCATGTCGAATGATGTGCAGGTCGCCCGGGTGGCCAAGA
TAGCTACCGATGTGCCGCGTCGCAGTGGCAAGCAGCGTGACTCCAGCGGA
TTCCAGGGCAAGCACTCCGGCAGCGCGGCTGGCGAGGATTTCGAGTACGT
CTTCGGTAGCATTTCGCCGCGCGGTGGAGGACCCGGTGGCAGGCACTTGG
TGGGATCCTCCGACCTGGACTCTCCGGAGCACACGCAGCGGGACACCACC
GAGAGTGACAACAACATATCCAGCTGCTCCACGCTAGACATTGTCAACAA
AGTTGAGCAACTGTCGGTACAACAGCTAGAAAACCGGGTGCGGGATCTAA
CGCAGCGTCTGCAGCAGGCGGAAAGACAGCTCACTGAGAGCAACACAGAG
CGGGAAATATGCCACAAGCGCTTGGAGGTTGTCAGCCAGGCCCACGAGTG
TCGCATCACAGAGATGCACTGTGTCATCGCCGAGTTAAGCAAGAAATTGC
GCAGTAAGCAGGACCACGTTATCATGGAGGAGCAGGAGCCCGACGGCAGC
GAACTCAGCTTTCAGGAGGGTTCAGTGTACAATTCCGAGCTTAACCTCAC
CAATCCTGATGCCGAATGTCAAACAGAACCACTGGAAGACTTCGAGGGCG
CCTGCAGTACCACCAGCGTGGGTAACGTTGCCCACAAACCGCCGGAACTG
AGCCATAAGGGACAAGTGGAGGCACTGCAGGAGGAAGTTCTGCACTTGAG
AGCTCGAATCGCCCTCCTCCAGTCCGAGATTTCCACCAAGGATGCTGCTG
TGGTCGAGGAACAGACCAAAGTCGCCTTCGACTGCGAATCGGAAGTCAAC
GAGTGCGGACAGCGACTGAATGATTTGAATGTTTGCACTTCCTTGACAAG
TCCGCAAAAACGCATTCCAGCGGTACCGAAAATGGCTGAACGGGTTAAGT
TGCGGTGCGCCAGCAAACATGAATCCGGAGAAGATCCATCCCAAGATACT
TCATTGAGCAACGAGCAAATTAATCTGGTCGAACATTTGGTGTCGGAGCT
AAAGGAGCAAAATCTATATATGGAGAACTTTATGGAGCCCCTACATTTGA
GCAAAGACTTGGAGCGACTGCAACGACGTGTTGAACAATTGGAGATGCGA
AACACCATGCTGGCACTGACGCTAGACGAATGCAAGGAGCACACTGAGCA
TCTGTATCTGCTATGCGGAAAGTACGAGTCCAATGCGGTTGCTCTTCAGT
TGGCGCTTAATTGCAGTGATCGCGCCATCGAGGCCTACGACGTAATGTTG
GCTCTGCTCGAAAGCAAGTTGGCACTGCTGGGGGAGAAATCAGTGGCAGC
GGAAGAGAGTCGACGATCGGTGGAGGCGGTGGCCAGGCACCTGCTAGCCC
GTTTGGATAGCGAGAAAAACGTTTGTGAGAACAGCCTGGGACCGTGGCAA
CACAACATCAACCTGGGCCCAGAGGATGCCCCAAAAACTGGCCGCCCGTG
GTGTGCCGACGACGACAACCGCCTGCGTTACCACGTCTCCAAGCTGAAGG
GACGTCGTTCCAATGTCCAGCATACCATTGTCAGTTTGGAATCACCCTTC
AGCGACATATACGAAAGAAAGCGCCTGGCTTTGGAAAAGGAGCACGAACT
TCGGAGCGCGGACAAGAAGTCACCCATTGACTTGGAGACAGCAGTGATTA
TGCAAGAAATACTCGAGCTGCGGGATTCGAATTTGCAGCTGAAGACAAAA
ATGGAAGAGGCCGAGCAGGAACGGCAGAACGCCAACGAACGAGTGGGCAT
ACTCCACGAAGCCCTAAAGCAGCTACAGGCAAACAACCGGGTCTCGTATT
CGGAGGCGGAGCATGCGGCTCTCACAGAGCAGCAGTTGGTGGAGGCCTTA
ACTCGAGAAACGGAGCTCAAGGGTCGCATACAGACGCTATTGGCAAATGT
AACAGCTTCGCAGAAGGCCTTCGACGAAAAATACGAGCAACTGCATCAGA
ACGTGCGTGAACTGCAGAAATCCAACCACAATCTGGGCCAAATGTTAGAT
CACACCAAGCGCAAGTACCAGCTGCGGGTGAGGAAGCTAGAGCAGAAGAT
TGTTGACCTGCGGCTGGACTACGAGCAAGGCCATAACCATGTTCCTGAGA
CTACTCTGTAGGAAACGCATGACGACCTTCCAGGAGGACTGAGCAACTGG
GCGTGGAGCGGGCGCGCTTGTCACATATCCCGCAAAAGATCTTTCCCTCT
CGATCATATCGCTTATTTTACCTTTAATGCAATGACCACCCGCCCAGCAG
TCGCCGTGGATCCGCCATGACCAAGACAGTATCACGAATGTGCCATGCGA
CTTAATTGCAGTCGGCTGGGGCTTGGGCGGTGTCCCTGCCTCGCAGATAA
GGCTGCAGTAACTACATACTCAAATACATACATATTCAGAGGTGCCATGA
GCAAGGCTCCACCAACCTATCCATAGATCCGTGGGATTGGAGCATCCGTC
TATGGGCCACAAGCAATTACATATACACACATACGAATAGACAAACTAAG
GAGTTATTCAAGACGCATACACGGGATCCTATATTTATACAATGTATTCG
CATTTTGCTTGTTATATGATTCAATATGTATTTAAAACTGTACAAAATAT
AAAACGTCTACTAAAACTCGATAAAAAAAAAAAAAAAAAA

FI17904.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11189270..11189980 2228..1518 3555 100 Minus
chr3R 27901430 chr3R 11188568..11189211 2872..2229 3220 100 Minus
chr3R 27901430 chr3R 11191780..11192282 503..1 2500 99.8 Minus
chr3R 27901430 chr3R 11190595..11190925 1081..751 1655 100 Minus
chr3R 27901430 chr3R 11190040..11190345 1519..1214 1530 100 Minus
chr3R 27901430 chr3R 11190982..11191231 751..502 1250 100 Minus
chr3R 27901430 chr3R 11190406..11190540 1215..1081 675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15364635..15365345 2228..1518 3555 100 Minus
3R 32079331 3R 15363929..15364576 2876..2229 3240 100 Minus
3R 32079331 3R 15367145..15367647 503..1 2515 100 Minus
3R 32079331 3R 15365960..15366290 1081..751 1655 100 Minus
3R 32079331 3R 15365405..15365710 1519..1214 1530 100 Minus
3R 32079331 3R 15366347..15366596 751..502 1250 100 Minus
3R 32079331 3R 15365771..15365905 1215..1081 675 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:44:52 has no hits.

FI17904.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:45:55 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11188568..11189211 2229..2872 100 <- Minus
chr3R 11189270..11189980 1518..2228 100 <- Minus
chr3R 11190042..11190343 1216..1517 100 <- Minus
chr3R 11190406..11190539 1082..1215 100 <- Minus
chr3R 11190595..11190924 752..1081 100 <- Minus
chr3R 11190982..11191231 502..751 100 <- Minus
chr3R 11191782..11192282 1..501 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-18 13:53:35 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RC 1..2148 214..2361 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:02:18 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RC 1..2148 214..2361 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:08:50 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RC 1..2148 214..2361 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-18 13:53:35 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RC 1..2872 1..2872 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:02:18 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RC 19..2890 1..2872 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:08:50 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RC 19..2890 1..2872 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:45:55 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15363933..15364576 2229..2872 100 <- Minus
3R 15364635..15365345 1518..2228 100 <- Minus
3R 15365407..15365708 1216..1517 100 <- Minus
3R 15365771..15365904 1082..1215 100 <- Minus
3R 15365960..15366289 752..1081 100 <- Minus
3R 15366347..15366596 502..751 100 <- Minus
3R 15367147..15367647 1..501 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:45:55 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15363933..15364576 2229..2872 100 <- Minus
3R 15364635..15365345 1518..2228 100 <- Minus
3R 15365407..15365708 1216..1517 100 <- Minus
3R 15365771..15365904 1082..1215 100 <- Minus
3R 15365960..15366289 752..1081 100 <- Minus
3R 15366347..15366596 502..751 100 <- Minus
3R 15367147..15367647 1..501 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:45:55 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15363933..15364576 2229..2872 100 <- Minus
3R 15364635..15365345 1518..2228 100 <- Minus
3R 15365407..15365708 1216..1517 100 <- Minus
3R 15365771..15365904 1082..1215 100 <- Minus
3R 15365960..15366289 752..1081 100 <- Minus
3R 15366347..15366596 502..751 100 <- Minus
3R 15367147..15367647 1..501 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:18 Download gff for FI17904.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11192869..11193369 1..501 100   Minus
arm_3R 11189655..11190298 2229..2872 100 <- Minus
arm_3R 11190357..11191067 1518..2228 100 <- Minus
arm_3R 11191129..11191430 1216..1517 100 <- Minus
arm_3R 11191493..11191626 1082..1215 100 <- Minus
arm_3R 11191682..11192011 752..1081 100 <- Minus
arm_3R 11192069..11192318 502..751 100 <- Minus

FI17904.hyp Sequence

Translation from 213 to 2360

> FI17904.hyp
MSNDVQVARVAKIATDVPRRSGKQRDSSGFQGKHSGSAAGEDFEYVFGSI
SPRGGGPGGRHLVGSSDLDSPEHTQRDTTESDNNISSCSTLDIVNKVEQL
SVQQLENRVRDLTQRLQQAERQLTESNTEREICHKRLEVVSQAHECRITE
MHCVIAELSKKLRSKQDHVIMEEQEPDGSELSFQEGSVYNSELNLTNPDA
ECQTEPLEDFEGACSTTSVGNVAHKPPELSHKGQVEALQEEVLHLRARIA
LLQSEISTKDAAVVEEQTKVAFDCESEVNECGQRLNDLNVCTSLTSPQKR
IPAVPKMAERVKLRCASKHESGEDPSQDTSLSNEQINLVEHLVSELKEQN
LYMENFMEPLHLSKDLERLQRRVEQLEMRNTMLALTLDECKEHTEHLYLL
CGKYESNAVALQLALNCSDRAIEAYDVMLALLESKLALLGEKSVAAEESR
RSVEAVARHLLARLDSEKNVCENSLGPWQHNINLGPEDAPKTGRPWCADD
DNRLRYHVSKLKGRRSNVQHTIVSLESPFSDIYERKRLALEKEHELRSAD
KKSPIDLETAVIMQEILELRDSNLQLKTKMEEAEQERQNANERVGILHEA
LKQLQANNRVSYSEAEHAALTEQQLVEALTRETELKGRIQTLLANVTASQ
KAFDEKYEQLHQNVRELQKSNHNLGQMLDHTKRKYQLRVRKLEQKIVDLR
LDYEQGHNHVPETTL*

FI17904.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG34404-PC 715 CG34404-PC 1..715 1..715 3643 100 Plus
CG34404-PD 630 CG34404-PD 12..630 97..715 3146 100 Plus
CG34404-PE 565 CG34404-PE 1..565 151..715 2877 100 Plus
Mhc-PL 1936 CG17927-PL 1174..1798 75..705 166 20.1 Plus
Mhc-PM 1936 CG17927-PM 1174..1798 75..705 166 20.1 Plus

FI17904.pep Sequence

Translation from 213 to 2360

> FI17904.pep
MSNDVQVARVAKIATDVPRRSGKQRDSSGFQGKHSGSAAGEDFEYVFGSI
SPRGGGPGGRHLVGSSDLDSPEHTQRDTTESDNNISSCSTLDIVNKVEQL
SVQQLENRVRDLTQRLQQAERQLTESNTEREICHKRLEVVSQAHECRITE
MHCVIAELSKKLRSKQDHVIMEEQEPDGSELSFQEGSVYNSELNLTNPDA
ECQTEPLEDFEGACSTTSVGNVAHKPPELSHKGQVEALQEEVLHLRARIA
LLQSEISTKDAAVVEEQTKVAFDCESEVNECGQRLNDLNVCTSLTSPQKR
IPAVPKMAERVKLRCASKHESGEDPSQDTSLSNEQINLVEHLVSELKEQN
LYMENFMEPLHLSKDLERLQRRVEQLEMRNTMLALTLDECKEHTEHLYLL
CGKYESNAVALQLALNCSDRAIEAYDVMLALLESKLALLGEKSVAAEESR
RSVEAVARHLLARLDSEKNVCENSLGPWQHNINLGPEDAPKTGRPWCADD
DNRLRYHVSKLKGRRSNVQHTIVSLESPFSDIYERKRLALEKEHELRSAD
KKSPIDLETAVIMQEILELRDSNLQLKTKMEEAEQERQNANERVGILHEA
LKQLQANNRVSYSEAEHAALTEQQLVEALTRETELKGRIQTLLANVTASQ
KAFDEKYEQLHQNVRELQKSNHNLGQMLDHTKRKYQLRVRKLEQKIVDLR
LDYEQGHNHVPETTL*

FI17904.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16706-PA 626 GF16706-PA 12..626 97..715 2753 84.5 Plus
Dana\GF19887-PA 116 GF19887-PA 1..111 1..117 404 74.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20596-PA 630 GG20596-PA 12..630 97..715 3224 98.5 Plus
Dere\GG20585-PA 104 GG20585-PA 1..97 1..97 494 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18407-PA 683 GH18407-PA 17..683 49..715 2261 70.1 Plus
Dgri\GH18406-PA 121 GH18406-PA 1..115 1..96 296 58.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG34404-PC 715 CG34404-PC 1..715 1..715 3643 100 Plus
CG34404-PD 630 CG34404-PD 12..630 97..715 3146 100 Plus
CG34404-PE 565 CG34404-PE 1..565 151..715 2877 100 Plus
Mhc-PL 1936 CG17927-PL 1174..1798 75..705 166 20.1 Plus
Mhc-PM 1936 CG17927-PM 1174..1798 75..705 166 20.1 Plus
Mhc-PK 1936 CG17927-PK 1174..1798 75..705 166 20.1 Plus
Mhc-PP 1949 CG17927-PP 1174..1798 75..705 166 20.1 Plus
Mhc-PV 1962 CG17927-PV 1174..1798 75..705 166 20.1 Plus
Mhc-PS 1962 CG17927-PS 1174..1798 75..705 166 20.1 Plus
Mhc-PB 1962 CG17927-PB 1174..1798 75..705 166 20.1 Plus
Golgin245-PA 1489 CG3493-PA 333..941 106..686 164 19.4 Plus
CLIP-190-PN 1598 CG5020-PN 519..1155 94..696 161 21.1 Plus
CLIP-190-PP 1623 CG5020-PP 544..1180 94..696 161 21.1 Plus
CLIP-190-PC 1652 CG5020-PC 573..1209 94..696 161 21.1 Plus
CLIP-190-PS 1653 CG5020-PS 574..1210 94..696 161 21.1 Plus
CLIP-190-PM 1668 CG5020-PM 589..1225 94..696 161 21.1 Plus
CLIP-190-PB 1689 CG5020-PB 610..1246 94..696 161 21.1 Plus
CLIP-190-PA 1690 CG5020-PA 611..1247 94..696 161 21.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24310-PA 636 GI24310-PA 12..636 97..715 2167 70.8 Plus
Dmoj\GI24309-PA 215 GI24309-PA 1..169 1..157 295 47.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23640-PA 630 GL23640-PA 12..630 97..715 2608 81 Plus
Dper\GL23639-PA 106 GL23639-PA 1..102 1..97 314 64.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30112-PA 720 GA30112-PA 1..720 1..715 2939 78.7 Plus
Dpse\GA30112-PB 630 GA30112-PB 12..630 97..715 2610 81 Plus
Dpse\GA30112-PC 565 GA30112-PC 1..565 151..715 2357 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25776-PA 630 GM25776-PA 12..630 97..715 3197 98.1 Plus
Dsec\GM25775-PA 134 GM25775-PA 1..97 1..97 457 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20354-PA 630 GD20354-PA 12..630 97..715 3211 98.4 Plus
Dsim\GD20353-PA 118 GD20353-PA 1..109 1..109 452 89.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10394-PA 690 GJ10394-PA 54..690 97..715 2270 72.4 Plus
Dvir\GJ10393-PA 119 GJ10393-PA 6..114 1..99 301 63.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11441-PA 623 GK11441-PA 13..623 97..715 2181 71.7 Plus
Dwil\GK11440-PA 117 GK11440-PA 1..91 1..97 264 64 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26381-PA 630 GE26381-PA 12..630 97..715 3205 98.4 Plus
Dyak\GE26380-PA 109 GE26380-PA 1..97 1..97 443 99 Plus