Clone FI18103 Report

Search the DGRC for FI18103

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:181
Well:3
Vector:pFlc-1
Associated Gene/TranscriptGot2-RA
Protein status:FI18103.pep: gold
Sequenced Size:1510

Clone Sequence Records

FI18103.complete Sequence

1510 bp assembled on 2012-02-07

GenBank Submission: BT133167.1

> FI18103.complete
AGTACAACCACCGAGTGCATTTAGCAATGTCGCAGATCTGTAAGCGCGGT
TTGTTGATCAGCAACCGATTGGCGCCCGCCGCCCTCCGCTGCAAATCAAC
ATGGTTCTCCGAGGTGCAGATGGGCCCACCCGATGCCATCTTGGGTGTCA
CGGAAGCCTTCAAGAAGGACACCAACCCCAAGAAGATCAACTTGGGCGCT
GGCGCCTATCGCGATGACAACACCCAGCCCTTCGTGCTCCCCAGTGTTCG
GGAGGCCGAGAAGAGAGTGGTGAGCCGTAGTCTGGACAAGGAGTACGCCA
CAATCATCGGCATTCCCGAGTTCTACAACAAGGCCATCGAGCTGGCATTG
GGCAAGGGATCCAAGCGTTTGGCGGCCAAGCACAACGTGACCGCCCAGTC
CATCAGTGGAACTGGAGCTCTGCGCATCGGAGCCGCCTTCCTGGCCAAGT
TCTGGCAGGGCAACCGCGAGATCTACATCCCGTCGCCATCGTGGGGCAAC
CATGTGGCCATTTTCGAGCACGCCGGTCTGCCGGTGAACCGATACCGCTA
CTACGACAAGGACACCTGTGCCCTGGACTTTGGCGGCCTGATCGAGGATC
TGAAGAAAATCCCCGAGAAGAGCATTGTTCTTCTGCACGCCTGCGCCCAC
AACCCCACTGGAGTGGATCCCACTCTGGAGCAGTGGCGTGAGATCTCGGC
TCTGGTCAAGAAACGCAATCTGTATCCCTTCATCGACATGGCCTACCAAG
GCTTCGCCACCGGAGACATTGACCGCGACGCCCAGGCGGTCCGCACCTTC
GAGGCCGATGGCCACGACTTCTGCCTGGCCCAGAGTTTCGCCAAGAACAT
GGGATTGTATGGTGAGCGCGCTGGCGCCTTCACCGTGCTGTGCTCCGACG
AGGAGGAGGCTGCTCGCGTGATGTCCCAAGTTAAGATCCTGATCCGTGGT
CTGTACTCCAATCCCCCGGTGCACGGAGCTCGTATTGCCGCCGAGATCCT
CAACAACGAGGACTTGCGCGCCCAGTGGCTGAAGGATGTGAAGCTGATGG
CCGACCGCATCATCGATGTGCGCACCAAGCTCAAGGACAATCTAATTAAG
CTGGGATCCAGCCAGAACTGGGACCACATTGTCAACCAAATCGGCATGTT
CTGCTTCACGGGCCTGAAGCCGGAGCAGGTGCAGAAGCTGATCAAGGATC
ACAGCGTCTATCTCACCAACGATGGACGTGTTTCGATGGCGGGAGTCACC
AGCAAGAATGTCGAGTACCTGGCTGAGAGCATACACAAGGTTACCAAGTA
AGGAGGACCAGTGGAGATCGAAGTGGAGATGGAGTTTCTGTAGTACCTTC
TAATCGGCACTTGTACGAATTTTCTAGCACCAACGAAATTGCGAAGTCTA
GATAAGCCAATGCATTTTGCACACTCTCTATCCATATCTCTGTATATAAG
CTAAATGATCTGCCTTTTAAAAAATAAAGCATTTAAAATGTTAGCAAAAA
AAAAAAAAAA

FI18103.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1984263..1985153 1494..604 4410 99.7 Minus
chr2L 23010047 chr2L 1985221..1985471 605..355 1195 98.4 Minus
chr2L 23010047 chr2L 1985695..1985855 255..95 805 100 Minus
chr2L 23010047 chr2L 1985531..1985635 357..253 525 100 Minus
chr2L 23010047 chr2L 1987336..1987429 94..1 470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1984509..1985403 1498..604 4460 99.9 Minus
2L 23513712 2L 1985471..1985721 605..355 1255 100 Minus
2L 23513712 2L 1985945..1986105 255..95 805 100 Minus
2L 23513712 2L 1985781..1985885 357..253 525 100 Minus
2L 23513712 2L 1987585..1987678 94..1 470 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:01:39 has no hits.

FI18103.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:02:21 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1984262..1985151 606..1495 99 <- Minus
chr2L 1985221..1985469 357..605 98 <- Minus
chr2L 1985532..1985633 255..356 100 <- Minus
chr2L 1985696..1985855 95..254 100 <- Minus
chr2L 1987336..1987429 1..94 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-07 13:42:51 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 1..1275 27..1301 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:06:31 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 1..1275 27..1301 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:19:02 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 1..1275 27..1301 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-07 13:42:51 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 84..1577 1..1495 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:06:31 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 81..1574 1..1495 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:19:02 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RA 81..1574 1..1495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:21 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1985782..1985883 255..356 100 <- Minus
2L 1985946..1986105 95..254 100 <- Minus
2L 1987585..1987678 1..94 100   Minus
2L 1984512..1985401 606..1495 99 <- Minus
2L 1985471..1985719 357..605 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:21 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1985782..1985883 255..356 100 <- Minus
2L 1985946..1986105 95..254 100 <- Minus
2L 1987585..1987678 1..94 100   Minus
2L 1984512..1985401 606..1495 99 <- Minus
2L 1985471..1985719 357..605 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:21 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1985782..1985883 255..356 100 <- Minus
2L 1985946..1986105 95..254 100 <- Minus
2L 1987585..1987678 1..94 100   Minus
2L 1984512..1985401 606..1495 99 <- Minus
2L 1985471..1985719 357..605 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:06:31 Download gff for FI18103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1984512..1985401 606..1495 99 <- Minus
arm_2L 1985471..1985719 357..605 100 <- Minus
arm_2L 1985782..1985883 255..356 100 <- Minus
arm_2L 1985946..1986105 95..254 100 <- Minus
arm_2L 1987585..1987678 1..94 100   Minus

FI18103.hyp Sequence

Translation from 2 to 1300

> FI18103.hyp
YNHRVHLAMSQICKRGLLISNRLAPAALRCKSTWFSEVQMGPPDAILGVT
EAFKKDTNPKKINLGAGAYRDDNTQPFVLPSVREAEKRVVSRSLDKEYAT
IIGIPEFYNKAIELALGKGSKRLAAKHNVTAQSISGTGALRIGAAFLAKF
WQGNREIYIPSPSWGNHVAIFEHAGLPVNRYRYYDKDTCALDFGGLIEDL
KKIPEKSIVLLHACAHNPTGVDPTLEQWREISALVKKRNLYPFIDMAYQG
FATGDIDRDAQAVRTFEADGHDFCLAQSFAKNMGLYGERAGAFTVLCSDE
EEAARVMSQVKILIRGLYSNPPVHGARIAAEILNNEDLRAQWLKDVKLMA
DRIIDVRTKLKDNLIKLGSSQNWDHIVNQIGMFCFTGLKPEQVQKLIKDH
SVYLTNDGRVSMAGVTSKNVEYLAESIHKVTK*

FI18103.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Got2-PA 424 CG4233-PA 1..424 9..432 2205 100 Plus
Got2-PB 431 CG4233-PB 31..431 32..432 2089 100 Plus
Got1-PA 416 CG8430-PA 4..398 35..428 938 46.9 Plus
Got1-PB 437 CG8430-PB 25..419 35..428 938 46.9 Plus

FI18103.pep Sequence

Translation from 2 to 1300

> FI18103.pep
YNHRVHLAMSQICKRGLLISNRLAPAALRCKSTWFSEVQMGPPDAILGVT
EAFKKDTNPKKINLGAGAYRDDNTQPFVLPSVREAEKRVVSRSLDKEYAT
IIGIPEFYNKAIELALGKGSKRLAAKHNVTAQSISGTGALRIGAAFLAKF
WQGNREIYIPSPSWGNHVAIFEHAGLPVNRYRYYDKDTCALDFGGLIEDL
KKIPEKSIVLLHACAHNPTGVDPTLEQWREISALVKKRNLYPFIDMAYQG
FATGDIDRDAQAVRTFEADGHDFCLAQSFAKNMGLYGERAGAFTVLCSDE
EEAARVMSQVKILIRGLYSNPPVHGARIAAEILNNEDLRAQWLKDVKLMA
DRIIDVRTKLKDNLIKLGSSQNWDHIVNQIGMFCFTGLKPEQVQKLIKDH
SVYLTNDGRVSMAGVTSKNVEYLAESIHKVTK*

FI18103.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15312-PA 424 GF15312-PA 1..424 9..432 1965 83 Plus
Dana\GF11770-PA 416 GF11770-PA 4..398 35..428 985 46.3 Plus
Dana\GF10678-PA 674 GF10678-PA 264..647 49..432 533 31.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24563-PA 424 GG24563-PA 1..424 9..432 2259 98.6 Plus
Dere\GG20572-PA 436 GG20572-PA 24..418 35..428 978 46.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25015-PA 428 GH25015-PA 1..428 9..432 1935 81.3 Plus
Dgri\GH21676-PA 413 GH21676-PA 3..400 32..428 971 45.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Got2-PA 424 CG4233-PA 1..424 9..432 2205 100 Plus
Got2-PB 431 CG4233-PB 31..431 32..432 2089 100 Plus
Got1-PA 416 CG8430-PA 4..398 35..428 938 46.9 Plus
Got1-PB 437 CG8430-PB 25..419 35..428 938 46.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13682-PA 427 GI13682-PA 1..427 9..432 1939 81.3 Plus
Dmoj\GI18831-PA 410 GI18831-PA 3..400 32..428 986 45.4 Plus
Dmoj\GI13534-PA 441 GI13534-PA 29..426 35..431 874 42.1 Plus
Dmoj\GI11671-PA 467 GI11671-PA 12..428 18..430 569 32 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18459-PA 427 GL18459-PA 1..427 9..432 1892 79.6 Plus
Dper\GL10236-PA 415 GL10236-PA 4..398 35..428 1005 47.4 Plus
Dper\GL19583-PA 462 GL19583-PA 40..437 35..432 524 29.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18050-PA 427 GA18050-PA 1..427 9..432 1899 79.9 Plus
Dpse\GA24132-PA 415 GA24132-PA 4..398 35..428 1005 47.4 Plus
Dpse\GA26018-PA 462 GA26018-PA 40..437 35..432 526 29.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16578-PA 1044 GM16578-PA 1..198 9..205 1075 97 Plus
Dsec\GM21664-PA 437 GM21664-PA 25..419 35..428 989 47.9 Plus
Dsec\GM19419-PA 148 GM19419-PA 6..130 304..428 366 50.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22881-PA 424 GD22881-PA 1..424 9..432 2243 97.9 Plus
Dsim\GD11164-PA 437 GD11164-PA 25..419 35..428 989 47.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17439-PA 427 GJ17439-PA 1..427 9..432 1953 81.5 Plus
Dvir\GJ21858-PA 411 GJ21858-PA 6..400 35..428 977 46.3 Plus
Dvir\GJ13488-PA 826 GJ13488-PA 4..402 35..432 923 44 Plus
Dvir\GJ13489-PA 421 GJ13489-PA 6..390 49..432 848 42.5 Plus
Dvir\GJ11347-PA 463 GJ11347-PA 22..428 29..430 594 34 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24813-PA 424 GK24813-PA 1..424 9..432 1985 84.2 Plus
Dwil\GK21961-PA 415 GK21961-PA 4..398 35..428 968 44.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15280-PA 424 GE15280-PA 1..424 9..432 2262 98.8 Plus
Dyak\GE11758-PA 437 GE11758-PA 25..419 35..428 978 46 Plus