Clone FI18122 Report

Search the DGRC for FI18122

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:181
Well:22
Vector:pFlc-1
Associated Gene/TranscriptSnx1-RA
Protein status:FI18122.pep: gold
Sequenced Size:2040

Clone Sequence Records

FI18122.complete Sequence

2040 bp assembled on 2012-01-17

GenBank Submission: BT133048.1

> FI18122.complete
AGTTGTTTCAGTGGTCTGGTCACACTGCTGGGCGACCGAAACGAAACGAG
TAAAAATTCCGATAATTACAATTAATATAAAATAAAAACGCGGAACATAA
CGAACAAAAATGGAGGTGGAAAGCCCGGAACACACGCGCGACTTCGCCGA
GGTAGACATCAATAACGGTGCGGCCACAGGATCGGAAGACGAGGAGGAGG
AGGTGCCAGCGCCCGGCAGCGTAACTCTGGATCGCAACGAAAGTGATCTC
TTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACCCGCTGCA
GGAAGTGCTCACCGACGACGGCGACTACTTCATCAGCATCGTGGTCTCGG
ATCCGCAGAAAATCGGCGATGGCATGGGCTCCTATTTGGCCTACAAGGTA
ACGACCAAAACGAACATTCCCAAATTCAAGCGTAGCGAGTTCAGTACTCT
GCGCCGCTTCAGCGATTTCCTTGGCATCCATGATCTGCTTGTGGGCAAGT
ACATGCGGCTGGGCCGCATCATACCGCCGGCGCCCTCCAAGAACATCATA
GGCAGCACCAAGGTGAAGATTAGCCCGCAGCAAAGCGAACCGGGCACGCC
CATGACCCAGGAATGGGTGGAGATCCGCCGGGCGGCCCTCGAGCGATTCG
TCCACCGTACCGCCCAGCATCCGGTGCTGCGCGTCGATCTGGATTTCATG
AACTTCCTGGAGAGCGACCAGGAGCTGCCGCGTTCAGTGAATACCTCTGC
GCTCAGTGGAGCCGGCGTCATCCGCCTGTTTAACAAAGTTGGCGAAACTG
TGAACAAGATTACCTACAAAATGGACGAGAACGATCCGTGGTTCGACGAC
AAGATCACCGAGGTGGAGAGCCTGGACGCCAATCTGCAGAAGCTGCACAA
TGCCATGAAATCGCTGGTCACGTCGCGTCGTGAGCTGTCGCTGCTCACCG
GCTTGGTGGCCAAGTCGGCGGCCATGCTGAGCACTTGCGAGGAGCACACA
GGCCTCTCCAGAGCGCTGTCCAACCTGGCGGACGTGGAGGAGAAGATAGA
GCTACTGCGCTCCGAGCAGGCCAATTCGGACTTCTTCATTCTGGCCGAGT
TTATCAAGGATTACCTGGGCCTGTTTGGCGCCATCAAGTGCATTTTTCAT
GAGCGCGTCAAGGCTTTCCAGAACTGGCAGTACGCACAAATGCAGTTGTC
CAAGCGGCGTGAGAACCGTGGACGCTTCGAGCTAGCCAATAGGGCGGACA
AGCTGGATCAGGCCCAGCAGGAAGTGGACGAGTGGCAGGGAAAGGTTCAG
CGCTGTCAGCAGCAGTTCGACGACATTTCGGCGGAAATTAAGCGTGAGAT
GGAGCGTTTCGAATTGACCAGAGTTAAAGACTTTAAAGTAAACATTATCA
AGTATATAGAAGACCAAATGGCGCATCAGCAACAGATCGTCAGCTATTGG
GAGGCCTTTGCTCCGTTTGCCCGCGAAATCGTTTAACTTTTATTCCGATT
ATCGTTGCATTTCCAAAAACTTTTGCATAACCAACAGCTATGCGCGCTAT
TAACTAATTCTGCGGGACCAAATTCGATCTTAATCTTGCGATTTGGAGCT
ACAACTTCGCCTTAAGCACTTATCTTGCAATTTGCCGCCGAAGCTCGTAT
TTTTTGGGAAACTGCTTCCGATTCCTCTCAAGCATTTCGCGATGCATTCA
CAATGCCTCTATCTCTTTATTCGTACACAGTAATTATTATCAGAAAGCTG
AAAGTTTGCTACAGACCCAGGGATCTGCGTATTCTCATTCAAAAATTGTA
TTCGGTATTATCTAAAACAAAGCCATGGATCTAGTTAGTTAGTTGAAAGT
GAAGAAGACTCATTGGCAATTTCCAAATTGAAGTTTATACCATTATTATT
GGGAAATGGGTTTCCCTGTTTACTGTTGGTATAATTATGTATTTATATAT
ATATATTCCAATTAAACATTTTGTATCATGACAAACAGAGCATTTCAACA
ATAAATTTGTAAATATGTATAGATGCAAAAAAAAAAAAAA

FI18122.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3449931..3450816 397..1282 4415 99.9 Plus
chr2L 23010047 chr2L 3451087..3451679 1433..2025 2965 100 Plus
chr2L 23010047 chr2L 3449261..3449550 3..292 1435 99.7 Plus
chr2L 23010047 chr2L 3450872..3451026 1281..1435 775 100 Plus
chr2L 23010047 chr2L 3449758..3449862 293..397 525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3450358..3451243 397..1282 4430 100 Plus
2L 23513712 2L 3451514..3452110 1433..2029 2970 99.8 Plus
2L 23513712 2L 3449688..3449977 3..292 1450 100 Plus
2L 23513712 2L 3451299..3451453 1281..1435 775 100 Plus
2L 23513712 2L 3450185..3450289 293..397 525 100 Plus
Blast to na_te.dros performed 2019-03-15 12:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 5864..5946 2023..1939 123 64 Minus

FI18122.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:36:40 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3449259..3449550 1..292 99 -> Plus
chr2L 3449758..3449861 293..396 100 -> Plus
chr2L 3449931..3450816 397..1282 99 -> Plus
chr2L 3450874..3451026 1283..1435 100 -> Plus
chr2L 3451090..3451679 1436..2026 95   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-17 10:16:28 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
CG2774-RA 1..1377 110..1486 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:00:39 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
Snx1-RA 1..1377 110..1486 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:04:47 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
Snx1-RA 1..1377 110..1486 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 10:16:28 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
CG2774-RA 1..2025 1..2025 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:00:39 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
Snx1-RA 4..2028 1..2025 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:04:47 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
Snx1-RA 4..2028 1..2025 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:40 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3450185..3450288 293..396 100 -> Plus
2L 3449686..3449977 1..292 99 -> Plus
2L 3450358..3451243 397..1282 100 -> Plus
2L 3451301..3451453 1283..1435 100 -> Plus
2L 3451517..3452106 1436..2026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:40 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3450185..3450288 293..396 100 -> Plus
2L 3449686..3449977 1..292 99 -> Plus
2L 3450358..3451243 397..1282 100 -> Plus
2L 3451301..3451453 1283..1435 100 -> Plus
2L 3451517..3452106 1436..2026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:40 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3450185..3450288 293..396 100 -> Plus
2L 3449686..3449977 1..292 99 -> Plus
2L 3450358..3451243 397..1282 100 -> Plus
2L 3451301..3451453 1283..1435 100 -> Plus
2L 3451517..3452106 1436..2026 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:00:39 Download gff for FI18122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3449686..3449977 1..292 99 -> Plus
arm_2L 3450185..3450288 293..396 100 -> Plus
arm_2L 3450358..3451243 397..1282 100 -> Plus
arm_2L 3451301..3451453 1283..1435 100 -> Plus
arm_2L 3451517..3452106 1436..2026 99   Plus

FI18122.hyp Sequence

Translation from 109 to 1485

> FI18122.hyp
MEVESPEHTRDFAEVDINNGAATGSEDEEEEVPAPGSVTLDRNESDLFVS
ALSPSSIGDIHPLQEVLTDDGDYFISIVVSDPQKIGDGMGSYLAYKVTTK
TNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGRIIPPAPSKNIIGST
KVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFL
ESDQELPRSVNTSALSGAGVIRLFNKVGETVNKITYKMDENDPWFDDKIT
EVESLDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLSTCEEHTGLS
RALSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERV
KAFQNWQYAQMQLSKRRENRGRFELANRADKLDQAQQEVDEWQGKVQRCQ
QQFDDISAEIKREMERFELTRVKDFKVNIIKYIEDQMAHQQQIVSYWEAF
APFAREIV*

FI18122.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
Snx1-PA 458 CG2774-PA 1..458 1..458 2341 100 Plus
Snx1-PB 456 CG2774-PB 1..456 1..458 2312 99.6 Plus
Snx6-PB 455 CG8282-PB 35..443 33..446 231 21.4 Plus
Snx6-PA 449 CG8282-PA 35..437 33..446 222 21 Plus

FI18122.pep Sequence

Translation from 109 to 1485

> FI18122.pep
MEVESPEHTRDFAEVDINNGAATGSEDEEEEVPAPGSVTLDRNESDLFVS
ALSPSSIGDIHPLQEVLTDDGDYFISIVVSDPQKIGDGMGSYLAYKVTTK
TNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGRIIPPAPSKNIIGST
KVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFL
ESDQELPRSVNTSALSGAGVIRLFNKVGETVNKITYKMDENDPWFDDKIT
EVESLDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLSTCEEHTGLS
RALSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERV
KAFQNWQYAQMQLSKRRENRGRFELANRADKLDQAQQEVDEWQGKVQRCQ
QQFDDISAEIKREMERFELTRVKDFKVNIIKYIEDQMAHQQQIVSYWEAF
APFAREIV*

FI18122.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21580-PA 457 GF21580-PA 1..457 1..458 2264 94.1 Plus
Dana\GF14626-PA 448 GF14626-PA 77..436 75..446 178 21.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24942-PA 458 GG24942-PA 1..458 1..458 2423 98.5 Plus
Dere\GG23465-PA 449 GG23465-PA 78..437 75..446 179 22.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11581-PA 457 GH11581-PA 2..457 7..458 2150 87.1 Plus
Dgri\GH10246-PA 448 GH10246-PA 77..436 75..446 188 22.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Snx1-PA 458 CG2774-PA 1..458 1..458 2341 100 Plus
Snx1-PB 456 CG2774-PB 1..456 1..458 2312 99.6 Plus
Snx6-PB 455 CG8282-PB 35..443 33..446 231 21.4 Plus
Snx6-PA 449 CG8282-PA 35..437 33..446 222 21 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17151-PA 462 GI17151-PA 1..462 1..458 2168 86.9 Plus
Dmoj\GI15397-PA 438 GI15397-PA 67..426 75..446 187 22.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19242-PA 456 GL19242-PA 1..456 1..458 2316 93.9 Plus
Dper\GL19393-PA 422 GL19393-PA 77..373 75..367 161 22.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15459-PA 456 GA15459-PA 1..456 1..458 2312 93.7 Plus
Dpse\GA20953-PA 448 GA20953-PA 77..436 75..446 175 22.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11137-PA 458 GM11137-PA 1..458 1..458 2445 99.6 Plus
Dsec\GM13127-PA 449 GM13127-PA 78..437 75..446 181 21.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23230-PA 221 GD23230-PA 1..221 238..458 1181 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17655-PA 461 GJ17655-PA 1..461 1..458 2191 87.7 Plus
Dvir\GJ17278-PA 432 GJ17278-PA 67..420 75..446 171 21.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24153-PA 456 GK24153-PA 1..456 1..458 2261 91.7 Plus
Dwil\GK14977-PA 455 GK14977-PA 84..443 75..446 186 23.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18233-PA 458 GE18233-PA 1..458 1..458 2449 99.8 Plus
Dyak\GE11109-PA 449 GE11109-PA 78..438 75..447 183 22.6 Plus