Clone FI18160 Report

Search the DGRC for FI18160

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:181
Well:60
Vector:pFlc-1
Associated Gene/Transcriptnuf-RA
Protein status:FI18160.pep: gold
Sequenced Size:2712

Clone Sequence Records

FI18160.complete Sequence

2712 bp assembled on 2012-01-19

GenBank Submission: BT133122.1

> FI18160.complete
TGGGTTTCGGTCGTCGAATTTAGTTTGAAGCGGACGCATCGTCGGGCTGG
CATATATCGAAACTGCAATTGCATTTTTTTAATATTTTTACTCGTAATCA
AGCGTTAGTTGTTGCTGCGCGCGTGAAGTCGAATTGTATAGAAGTATCGG
AAAACAACATTATTTAAAACCATTAGGAATATACAATTGGACTTTGGCGT
TTTATTACTTTTACATATTTTCGATAGCGCGCGCGGTGATATTTCCCACG
TAAAACCACCAAATCACAACACAGCTCAAAAAATAAGTTAAAGACGTTGC
CAACGTTACGCACGCGTACAAATACAATTTACCAATAAAAAATGCAGCTA
TAAGTGCTTTGATATGCGAAGAATGCTGAATTAAGTGAAAGTGTAAGAAA
ATCGAATAAAACACAATAAACAAAGCCGATTTTAGGCAATATTCGGCTCA
ACTACCTGTTCTGCAACAAATACATAAACAGAAACAACAACAACACCGAG
ATCCAACTGTTGCGCTTCGCCGGCTATCTTCGTCTCCCTCTCTCCTTAGA
CTGCGCGCGTGTGTGTGTGTGTTCCTGTATTTTCACCATTCAGTTGTTGT
TGTGGCTTTTCGCCAAGTGCAAATAATTCGTTTTTTTTTGTTTTTAACCA
AATTCATGTTCAGCTAACGGTTAAAGCCACTCGTCTGCTCCAATTGGATA
CGCAAATATATTTCAACAGCTGCAGTAAGCTTTCCACCAAACATGGCACC
AATGCCCCGAATTCAGTTACCCAATGGAAATTCTTCCATAAAGGCTAGCA
CAAATGATTTTCTCTTTGCGGAAACAATGTCCGGCGACAGTAGTCCCACC
CCCAGCAGTCCGCCATCCAGTACAGCAGGCGTTGCCAAATCTCAGTGTTC
TTCCCTTTCGGATGGCGAATCCTTTGAGGGATATGGCGAAAATGAGTATC
CCACCCAACTTCGCGAAGCCCGCAGCTCCAATTCCAATGGGAGCCATAAT
ATGAGCAATCATATTAACAATAATTCTAATATCAGCGTGGGCAACAACAG
TGGACACAACCACAGTGGACACTCGAACGATGGAAATAACAACCTAAATG
GCAGCACTGGCGTCGAACTCGATTTGGCTCCACACGTCGGCTCATCAACA
CCTCAAGATGATGACGAACTAAACATAATGCCCCGGGATAATTGGGCCAG
GCGCAGTCTGCGACGAACTCCCACCAGTTCCGGCCGCAGGCAAATTAGTT
CAAATGCCTTAGCCAGCCAACTCTATAGATCATCGAGCTTTAACTCATCG
GGCCGTAGCTCCAACTGTGATACAACAGAAGACATGTACAGCGACATAAG
CTTGGAGAATCGTCATGACTACGATTATAGGCTGGAACTGCTGCAGCGCA
AGGTGGACGATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAACC
CGCACCAAGACCGAATATGCAGTCCTTCAGGCGCGTTATCACATGCTCGA
AGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGG
AGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCG
CTGCAGAACGAGAACTGCCAGATGAAGATCCGTGCCACCGAGATCGAGGC
AACGGCACTGCGGGAAGAAGCCGCCCGACTGCGTGTCCTGTGTGACAAGC
AGGCCAATGACCTCCATCGCACCGAGGAACAGTTGGAGCTGGCGCGCGAC
CAAATCGGCGTCCTGCAACAGGAGCACGAGGAGCAGGCACAGGCACTGCG
CCGCCACGAACAGGAGAAGAAGTCCACCGAGGAGCTGATGCTGGAGCTGG
GCCGGGAACTGCAGCGTGCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCG
ACCACATCGCCGGAGAGCATAAGACTGGAGGAGCTGCATCAGGAGCTCGA
GGAGATGCGCCAGAAGAACCGAACCCTCGAAGAACAGAACGAGGAGCTGC
AGGCCACGATGCTGACCAACCAGGCCACCATGCTGACAAATGGCGTGGAG
CAGGGTCGCCATCTGCTGAACGGAACACTCAACAGTTTGGCTCAGGAGCT
CGAGGAGATGTCACAAGCCCAGCTACAACAGGCCTTCCAGGAAAAGGAGG
ATGAAAATGTTCGGCTTAAGCACTATATTGATACCATTCTACTCAACATC
GTGGAGAACTATCCTCAATTGCTGGAAGTCAAGCCCATGGAGCGAAAGTA
GTGCAGTCTACTGGAAGAATAAACCAACCCTAGGCACTCGGCAGAGTGTC
ACAACCACCTAACATTACCTAAAATTAATAAACTAACTAAACCATACTCT
ATGTTAACTTTTTAAGCTACACTCTATACATGTATTTATGCCTAACTTAA
GTCATAATTTATTTTATAACAATTTAATGTAGATTTTTAAACCAAAACAA
CGCAGAGAACACAAAGATTGCATGTCAAAATGATAAAAAAGTCCTTAATT
TGATTAGATTATGTTTTGTATAAAGAGAGTCCAAAATTATGTAAAAGTTT
ATTTTCCTTCGTTTCTAGTTTGCGTTTTGTATAGTTCGTGTTGTTGATCC
ATAAAGATATTACTTATAAATATTGTTAGATTTTAAGTCGTAAAAAATCT
TTCACTTATTAATGAAATGGAACCCAATAATTTATTGATAATTGCCAAAA
AAAAAAAAAAAA

FI18160.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14181009..14181731 5..723 3350 98.2 Plus
chr3L 24539361 chr3L 14222026..14222600 2120..2696 2760 99 Plus
chr3L 24539361 chr3L 14220757..14221215 1515..1973 2280 99.8 Plus
chr3L 24539361 chr3L 14190309..14190594 873..1158 1430 100 Plus
chr3L 24539361 chr3L 14190089..14190247 717..875 780 99.4 Plus
chr3L 24539361 chr3L 14221280..14221428 1974..2122 685 97.3 Plus
chr3L 24539361 chr3L 14220274..14220409 1381..1516 680 100 Plus
chr3L 24539361 chr3L 14203217..14203333 1265..1381 585 100 Plus
chr3L 24539361 chr3L 14190886..14190954 1159..1227 345 100 Plus
chr3L 24539361 chr3L 14202321..14202362 1225..1266 210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14190877..14191595 5..723 3565 99.7 Plus
3L 28110227 3L 14231924..14232506 2120..2702 2900 99.8 Plus
3L 28110227 3L 14230654..14231112 1515..1973 2295 100 Plus
3L 28110227 3L 14200162..14200447 873..1158 1430 100 Plus
3L 28110227 3L 14199942..14200100 717..875 795 100 Plus
3L 28110227 3L 14231177..14231325 1974..2122 745 100 Plus
3L 28110227 3L 14230175..14230310 1381..1516 680 100 Plus
3L 28110227 3L 14213087..14213203 1265..1381 585 100 Plus
3L 28110227 3L 14200739..14200807 1159..1227 345 100 Plus
3L 28110227 3L 14212191..14212232 1225..1266 210 100 Plus
Blast to na_te.dros performed 2019-03-15 12:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1456..1674 2473..2683 201 59.9 Plus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 63..209 2683..2532 153 61.3 Minus
McClintock 6450 McClintock McCLINTOCK 6450bp 2703..2760 2300..2357 119 67.2 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2629..2666 465..501 115 81.6 Plus

FI18160.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:51:25 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14220275..14220409 1382..1516 100 -> Plus
chr3L 14181004..14181727 1..719 97 -> Plus
chr3L 14190092..14190247 720..875 99 -> Plus
chr3L 14190312..14190594 876..1158 100 -> Plus
chr3L 14190886..14190954 1159..1227 100 -> Plus
chr3L 14202324..14202362 1228..1266 100 -> Plus
chr3L 14203219..14203333 1267..1381 100 -> Plus
chr3L 14220759..14221215 1517..1973 99 -> Plus
chr3L 14221280..14221428 1974..2122 97 -> Plus
chr3L 14222029..14222600 2123..2696 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-19 10:39:32 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 1..1509 743..2251 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:03:42 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1..1509 743..2251 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:12:11 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1..1509 743..2251 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 10:39:32 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 1..2692 5..2696 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:03:42 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1..2696 3..2696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:12:11 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 1..2696 3..2696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:51:25 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14230176..14230310 1382..1516 100 -> Plus
3L 14199945..14200100 720..875 100 -> Plus
3L 14200165..14200447 876..1158 100 -> Plus
3L 14200739..14200807 1159..1227 100 -> Plus
3L 14212194..14212232 1228..1266 100 -> Plus
3L 14190872..14191591 1..719 99 -> Plus
3L 14213089..14213203 1267..1381 100 -> Plus
3L 14230656..14231112 1517..1973 100 -> Plus
3L 14231177..14231325 1974..2122 100 -> Plus
3L 14231927..14232500 2123..2696 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:51:25 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14230176..14230310 1382..1516 100 -> Plus
3L 14199945..14200100 720..875 100 -> Plus
3L 14200165..14200447 876..1158 100 -> Plus
3L 14200739..14200807 1159..1227 100 -> Plus
3L 14212194..14212232 1228..1266 100 -> Plus
3L 14190872..14191591 1..719 99 -> Plus
3L 14213089..14213203 1267..1381 100 -> Plus
3L 14230656..14231112 1517..1973 100 -> Plus
3L 14231177..14231325 1974..2122 100 -> Plus
3L 14231927..14232500 2123..2696 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:51:25 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14230176..14230310 1382..1516 100 -> Plus
3L 14199945..14200100 720..875 100 -> Plus
3L 14200165..14200447 876..1158 100 -> Plus
3L 14200739..14200807 1159..1227 100 -> Plus
3L 14212194..14212232 1228..1266 100 -> Plus
3L 14190872..14191591 1..719 99 -> Plus
3L 14213089..14213203 1267..1381 100 -> Plus
3L 14230656..14231112 1517..1973 100 -> Plus
3L 14231177..14231325 1974..2122 100 -> Plus
3L 14231927..14232500 2123..2696 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:03:42 Download gff for FI18160.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14193839..14193907 1159..1227 100 -> Plus
arm_3L 14205294..14205332 1228..1266 100 -> Plus
arm_3L 14206189..14206303 1267..1381 100 -> Plus
arm_3L 14223276..14223410 1382..1516 100 -> Plus
arm_3L 14193045..14193200 720..875 100 -> Plus
arm_3L 14193265..14193547 876..1158 100 -> Plus
arm_3L 14183972..14184691 1..719 99 -> Plus
arm_3L 14223756..14224212 1517..1973 100 -> Plus
arm_3L 14224277..14224425 1974..2122 100 -> Plus
arm_3L 14225027..14225600 2123..2696 100   Plus

FI18160.pep Sequence

Translation from 742 to 2250

> FI18160.pep
MAPMPRIQLPNGNSSIKASTNDFLFAETMSGDSSPTPSSPPSSTAGVAKS
QCSSLSDGESFEGYGENEYPTQLREARSSNSNGSHNMSNHINNNSNISVG
NNSGHNHSGHSNDGNNNLNGSTGVELDLAPHVGSSTPQDDDELNIMPRDN
WARRSLRRTPTSSGRRQISSNALASQLYRSSSFNSSGRSSNCDTTEDMYS
DISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYH
MLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIRATE
IEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQ
ALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEELHQ
ELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLNSLA
QELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVKPME
RK*

FI18160.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24596-PA 525 GF24596-PA 1..525 1..502 2149 87.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15679-PA 526 GG15679-PA 222..526 198..502 1408 95.7 Plus
Dere\GG15676-PA 162 GG15676-PA 1..161 1..161 749 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17096-PA 544 GH17096-PA 1..544 1..502 1962 81.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PA 502 CG33991-PA 1..502 1..502 2553 100 Plus
nuf-PC 502 CG33991-PC 1..502 1..502 2553 100 Plus
nuf-PL 515 CG33991-PL 1..515 1..502 2529 97.5 Plus
nuf-PG 530 CG33991-PG 1..530 1..502 2503 94.7 Plus
nuf-PH 529 CG33991-PH 1..529 1..502 2487 94.5 Plus
nuf-PB 305 CG33991-PB 1..305 198..502 1522 100 Plus
nuf-PM 318 CG33991-PM 1..318 198..502 1498 95.9 Plus
nuf-PF 528 CG33991-PF 144..528 79..502 1456 74.1 Plus
nuf-PE 528 CG33991-PE 144..528 79..502 1456 74.1 Plus
nuf-PD 316 CG33991-PD 12..316 198..502 1445 96.1 Plus
nuf-PK 541 CG33991-PK 144..541 79..502 1432 71.9 Plus
nuf-PJ 541 CG33991-PJ 144..541 79..502 1432 71.9 Plus
lva-PD 2779 CG6450-PD 1336..1535 215..437 160 22.4 Plus
lva-PC 2779 CG6450-PC 1336..1535 215..437 160 22.4 Plus
brp-PI 1397 CG42344-PI 582..898 152..476 157 23.3 Plus
brp-PM 1498 CG42344-PM 683..999 152..476 157 23.3 Plus
CG31712-PA 290 CG31712-PA 3..235 155..419 154 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11698-PA 533 GI11698-PA 1..533 1..502 1985 82.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21004-PA 756 GL21004-PA 388..756 135..502 1592 92.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23801-PA 639 GA23801-PA 335..639 198..502 1258 88.5 Plus
Dpse\GA23801-PA 639 GA23801-PA 1..225 1..213 774 78.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25461-PA 526 GM25461-PA 222..526 198..502 1390 95.1 Plus
Dsec\GM25457-PA 162 GM25457-PA 1..161 1..161 850 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14483-PA 162 GD14483-PA 1..161 1..161 850 98.1 Plus
Dsim\GD14486-PA 98 GD14486-PA 1..98 405..502 486 98 Plus
Dsim\GD14485-PA 66 GD14485-PA 1..66 198..269 324 90.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11373-PA 531 GJ11373-PA 1..531 1..502 2043 84.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12678-PA 781 GK12678-PA 459..781 192..502 1335 87 Plus
Dwil\GK12678-PA 781 GK12678-PA 1..222 1..213 779 81.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22009-PA 527 GE22009-PA 223..527 198..502 1406 95.7 Plus
Dyak\GE22005-PA 177 GE22005-PA 1..162 1..162 686 95.7 Plus

FI18160.hyp Sequence

Translation from 742 to 2250

> FI18160.hyp
MAPMPRIQLPNGNSSIKASTNDFLFAETMSGDSSPTPSSPPSSTAGVAKS
QCSSLSDGESFEGYGENEYPTQLREARSSNSNGSHNMSNHINNNSNISVG
NNSGHNHSGHSNDGNNNLNGSTGVELDLAPHVGSSTPQDDDELNIMPRDN
WARRSLRRTPTSSGRRQISSNALASQLYRSSSFNSSGRSSNCDTTEDMYS
DISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYH
MLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIRATE
IEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQ
ALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEELHQ
ELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLNSLA
QELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVKPME
RK*

FI18160.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PA 502 CG33991-PA 1..502 1..502 2553 100 Plus
nuf-PC 502 CG33991-PC 1..502 1..502 2553 100 Plus
nuf-PL 515 CG33991-PL 1..515 1..502 2529 97.5 Plus
nuf-PG 530 CG33991-PG 1..530 1..502 2503 94.7 Plus
nuf-PH 529 CG33991-PH 1..529 1..502 2487 94.5 Plus