Clone FI18238 Report

Search the DGRC for FI18238

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:182
Well:38
Vector:pFlc-1
Associated Gene/TranscriptExo84-RA
Protein status:FI18238.pep: gold
Sequenced Size:2235

Clone Sequence Records

FI18238.complete Sequence

2235 bp assembled on 2012-01-17

GenBank Submission: BT133080.1

> FI18238.complete
AGGATCATGAAGGAGTTCGACGATTTTAATTTTAGCGTTGAGAAATATAC
CAAGGACCTGACACGAGAATGTGTGGGTGGCAGCGATTTGCAGCAGCGAA
AAAAGGAAATCGAGGCCTACAACGAAACGACGGCAGCAACGCTCAAGCAA
ACATGCAAAAAGAACTATATGGAGTTTATACAGACGGCCAAGGAGATATC
ACATCTCGAGTCGGAAATGTATCAACTGTCGCACATTCTGATTGAGCAGC
GCAATATTCTGGCCACCATGACGGATGGCAAGACTTCCAGTCACCTGAAG
GCAGAGAGTTTGGAGGCGGAGAGCACTACGGCGACGGAGGATCTGGAGAA
TAGCCATGCCACGCGGGCGGTCAAGGAAATGGTCCAGGGCTTCAATGGCA
ATCTGGAAGGCAAGACCTTCCTCAACGAGGGAGCTCTAATCGAGTTGGAC
AGTAATGATTATCGACCCATTCAAAGGGTCTTCTTTTTCCTCTTCAACGA
TGTACTGATTGTCTGCAAAGTGAAGCATGATAAGCGCTTGGATTTCCTCA
CCGAGTACGACCCCAAGAAAATAGCCGTGATTAACATTAAGGACTTGGAT
GGCGTTAAGAATGCCATTAATATCATTACTCCAGATGGTTCCAAGATCTA
TCAAAGCATCACGGCTGCTGGGAAGACGGAGTGGATAGAGAAGCTCGAAG
AGGCCTTCCGCTTTGACCAGCAAAAGAAACCAAAAAAGGGCCAGGCGCCA
CAGCCTCCAACTCGGGCCAAACAGCAGTCAAAAGCTTCGACTCCGGAGAA
GGAAACCACACCCCAGAGTCCCGGACAGCCCAAATCCCTGGAGGATGAGA
CGCCCGAGTGGCTAAGCACGGCCAGTGAAGAGATTCAGACCCTGGTGGCC
CAACGGCATTTCGAGGATGCCCAGGAGCTGATAAAGCGAACCCAGGACTT
CTTGCGAAACGAGAACCGAAAGAAGTTGCCGCTAGCGGACGCCATTGAAA
CCAAGGTGAAGCAGCAGGAGCTGAAGCTGATCAATGTGCTGCTCAAGGAG
TTGTCCAACAGTCACAATCGCAATCTGCAGATCGCTCTGAGAGCAGCCAA
GCGGCCTCTGAAGATTCTCGTAGAGATGGGTCGCTATCGGCAGGCGAGTG
CCACTCTGCTGAAGGTCTGCGCCGTCAGTTTGCGGGTGGCGCAACGGGAG
GCGCGCAGGAATAATGCGGATATATCGGAACTCTTCTTTTGTGACCTGAC
GCAGGTGGCCTGTGATTTTCTCACCGCCTTTGAGAAGCAACCGGCGTGCG
TTAGCGCGCTCGTGGTTTGGTGCAATGCGGAGCTGCAATATTTTGCCAGC
CAACTGATAAAGCATTACCTGACCAAGGGAACCTCCCTGGAGTCAGTGGC
CAAATGTGTGGAGCGAGTGCGCAAGCCCTCGACAAAGCTCACAGAGATCG
GGCTGGACATTAGTTATCATTTGGAAGGTCTGTTGCGCACTACACTCGAG
TCGCTCATAGAGGAATCCAAGGAGCGACTGCTGGACTCCGTGGGTCGCAC
CGAGGAGAGCTGGCAGCCGTACAATTTGCAGACCAAGTCGAACCTGAAGC
GTCTGCTCCTGGAGCTCGATGTCTTGGGTATCGATGTGCGAGCCCAGGCG
ACGGGCGACACATGGATTAATCTCACCCAGTCGACAGTGGTTTTCATCAG
ACACTTCCTGCAGCTCACCGAGTACTGCGGCTGTCTGGCCAAGTGCGAAA
CCCTGCTGCAGAGCCTGGAACTGCTTCTTAAGGAGCTGTTCATTGCCCAG
CATTCGTTGAAACCGCCCAGCGACATGGCCGTGGATCCCAACTTTGTAAT
GAAGAACAAGATTTTTCTGGTGGACAACCTGCTGCCCATCGCCATCGACA
AGTTTCGACAGATTTCTGGACGCCAGTGCGAGGGATTGCGCGAGTTGCAC
ACGAAAATGTCCCGCCAGCAAGGTGCTCCAGTGCCGCGCCAGCGCAGCGT
CTACACCACAGATGTGTTTTAGATGCACGCCGTGGGATTTACTTTCGATT
ACATATAATTTTTTATTTTTTCGTTTTGCTTCAATTATTTATAATATAAT
TATATACATATATAACCACAATAATAATAATATTTGTAAAATTAAAAATC
GAAGCGTGTGCTGCACTCTATCTCTTGCTTATTACAATTTCGCCGCTCGC
ATTATATATATAATTGTAAATACAAAAAAAAAAAA

FI18238.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21873746..21874518 1306..534 3850 99.9 Minus
chr3R 27901430 chr3R 21873157..21873687 1836..1306 2640 99.8 Minus
chr3R 27901430 chr3R 21872715..21873100 2222..1837 1915 99.7 Minus
chr3R 27901430 chr3R 21874572..21874903 534..203 1660 100 Minus
chr3R 27901430 chr3R 21874960..21875115 202..47 780 100 Minus
chr3R 27901430 chr3R 21875176..21875218 46..4 215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26050760..26051532 1306..534 3850 99.9 Minus
3R 32079331 3R 26050171..26050701 1836..1306 2655 100 Minus
3R 32079331 3R 26049730..26050115 2222..1837 1930 100 Minus
3R 32079331 3R 26051586..26051917 534..203 1660 100 Minus
3R 32079331 3R 26051974..26052129 202..47 780 100 Minus
3R 32079331 3R 26052190..26052232 46..4 215 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:29:52 has no hits.

FI18238.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:30:59 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21874573..21874903 203..533 100 <- Minus
chr3R 21874960..21875115 47..202 100 <- Minus
chr3R 21875176..21875221 1..46 97   Minus
chr3R 21873746..21874518 534..1306 99 <- Minus
chr3R 21872855..21873100 1837..2082 99 <- Minus
chr3R 21873157..21873686 1307..1836 99 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-17 10:16:06 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
exo84-RA 1..2016 7..2022 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:59:16 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
exo84-RA 1..2016 7..2022 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:00:36 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
Exo84-RA 1..2016 7..2022 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 10:16:06 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
exo84-RA 23..2243 1..2221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:59:16 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
exo84-RA 23..2243 1..2221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:00:36 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
Exo84-RA 23..2243 1..2221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:30:59 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26049729..26050115 1837..2223 99 <- Minus
3R 26050171..26050700 1307..1836 100 <- Minus
3R 26050760..26051532 534..1306 99 <- Minus
3R 26051587..26051917 203..533 100 <- Minus
3R 26051974..26052129 47..202 100 <- Minus
3R 26052190..26052235 1..46 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:30:59 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26049729..26050115 1837..2223 99 <- Minus
3R 26050171..26050700 1307..1836 100 <- Minus
3R 26050760..26051532 534..1306 99 <- Minus
3R 26051587..26051917 203..533 100 <- Minus
3R 26051974..26052129 47..202 100 <- Minus
3R 26052190..26052235 1..46 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:30:59 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26049729..26050115 1837..2223 99 <- Minus
3R 26050171..26050700 1307..1836 100 <- Minus
3R 26050760..26051532 534..1306 99 <- Minus
3R 26051587..26051917 203..533 100 <- Minus
3R 26051974..26052129 47..202 100 <- Minus
3R 26052190..26052235 1..46 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:59:16 Download gff for FI18238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21875451..21875837 1837..2223 99 <- Minus
arm_3R 21875893..21876422 1307..1836 100 <- Minus
arm_3R 21876482..21877254 534..1306 99 <- Minus
arm_3R 21877309..21877639 203..533 100 <- Minus
arm_3R 21877696..21877851 47..202 100 <- Minus
arm_3R 21877912..21877957 1..46 97   Minus

FI18238.hyp Sequence

Translation from 0 to 2021

> FI18238.hyp
RIMKEFDDFNFSVEKYTKDLTRECVGGSDLQQRKKEIEAYNETTAATLKQ
TCKKNYMEFIQTAKEISHLESEMYQLSHILIEQRNILATMTDGKTSSHLK
AESLEAESTTATEDLENSHATRAVKEMVQGFNGNLEGKTFLNEGALIELD
SNDYRPIQRVFFFLFNDVLIVCKVKHDKRLDFLTEYDPKKIAVINIKDLD
GVKNAINIITPDGSKIYQSITAAGKTEWIEKLEEAFRFDQQKKPKKGQAP
QPPTRAKQQSKASTPEKETTPQSPGQPKSLEDETPEWLSTASEEIQTLVA
QRHFEDAQELIKRTQDFLRNENRKKLPLADAIETKVKQQELKLINVLLKE
LSNSHNRNLQIALRAAKRPLKILVEMGRYRQASATLLKVCAVSLRVAQRE
ARRNNADISELFFCDLTQVACDFLTAFEKQPACVSALVVWCNAELQYFAS
QLIKHYLTKGTSLESVAKCVERVRKPSTKLTEIGLDISYHLEGLLRTTLE
SLIEESKERLLDSVGRTEESWQPYNLQTKSNLKRLLLELDVLGIDVRAQA
TGDTWINLTQSTVVFIRHFLQLTEYCGCLAKCETLLQSLELLLKELFIAQ
HSLKPPSDMAVDPNFVMKNKIFLVDNLLPIAIDKFRQISGRQCEGLRELH
TKMSRQQGAPVPRQRSVYTTDVF*

FI18238.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Exo84-PA 671 CG6095-PA 1..671 3..673 3417 100 Plus
Exo84-PB 672 CG6095-PB 1..672 3..673 3398 99.7 Plus

FI18238.pep Sequence

Translation from 0 to 2021

> FI18238.pep
RIMKEFDDFNFSVEKYTKDLTRECVGGSDLQQRKKEIEAYNETTAATLKQ
TCKKNYMEFIQTAKEISHLESEMYQLSHILIEQRNILATMTDGKTSSHLK
AESLEAESTTATEDLENSHATRAVKEMVQGFNGNLEGKTFLNEGALIELD
SNDYRPIQRVFFFLFNDVLIVCKVKHDKRLDFLTEYDPKKIAVINIKDLD
GVKNAINIITPDGSKIYQSITAAGKTEWIEKLEEAFRFDQQKKPKKGQAP
QPPTRAKQQSKASTPEKETTPQSPGQPKSLEDETPEWLSTASEEIQTLVA
QRHFEDAQELIKRTQDFLRNENRKKLPLADAIETKVKQQELKLINVLLKE
LSNSHNRNLQIALRAAKRPLKILVEMGRYRQASATLLKVCAVSLRVAQRE
ARRNNADISELFFCDLTQVACDFLTAFEKQPACVSALVVWCNAELQYFAS
QLIKHYLTKGTSLESVAKCVERVRKPSTKLTEIGLDISYHLEGLLRTTLE
SLIEESKERLLDSVGRTEESWQPYNLQTKSNLKRLLLELDVLGIDVRAQA
TGDTWINLTQSTVVFIRHFLQLTEYCGCLAKCETLLQSLELLLKELFIAQ
HSLKPPSDMAVDPNFVMKNKIFLVDNLLPIAIDKFRQISGRQCEGLRELH
TKMSRQQGAPVPRQRSVYTTDVF*

FI18238.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18221-PA 671 GF18221-PA 1..671 3..673 3362 93 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12203-PA 671 GG12203-PA 1..671 3..673 3544 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18144-PA 681 GH18144-PA 1..681 3..673 3126 87 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Exo84-PA 671 CG6095-PA 1..671 3..673 3417 100 Plus
Exo84-PB 672 CG6095-PB 1..672 3..673 3398 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22906-PA 678 GI22906-PA 1..678 3..673 3130 87.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22015-PA 675 GL22015-PA 1..675 3..673 3300 92.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19348-PA 675 GA19348-PA 1..675 3..673 3296 92.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10201-PA 671 GM10201-PA 1..671 3..673 3550 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18152-PA 552 GD18152-PA 16..552 137..673 2845 98.9 Plus
Dsim\GD18151-PA 113 GD18151-PA 1..105 3..107 520 94.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23318-PA 676 GJ23318-PA 1..676 3..673 3191 88.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12803-PA 685 GK12803-PA 1..685 3..673 3231 88.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10647-PA 671 GE10647-PA 1..671 3..673 3537 98.2 Plus