Clone FI18254 Report

Search the DGRC for FI18254

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:182
Well:54
Vector:pFlc-1
Associated Gene/TranscriptExo70-RA
Protein status:FI18254.pep: gold
Sequenced Size:2230

Clone Sequence Records

FI18254.complete Sequence

2230 bp assembled on 2012-01-19

GenBank Submission: BT133119.1

> FI18254.complete
GTTTGTTTTTAAAGGATTTTAGCTACATATACGCTTGAAAATGAACAATT
TGGACAGTTCATTGCAGGCGCACAATAAATTGGAGAAGGAAGCCACCAAT
TTAGCTCTGCTGAAAGATCGAGTGGATAAATACCATGATCTGTCCACGCA
AATGTCCAGTATTCTAACAATCTTCGAGAAGCGCCTGGGAAACCTGGAGC
AGACCATATTGCCCGTCTACCAGGAGACGGAGCAGCTCCAGAAACGGCAG
CAGAATCTGGAAGCTACTCTCAATTGTCTGGAAAGCGTCCTGTCCCACTA
CGATGTCTCCCAAGAGGTCTGCCAGTTGATTCATCAAGGCCCGGTGGAGG
GAAACATCTCGGTGTTCCTCGACGCACTAGCCAAACTGCGCGATGCCAAC
GATTACTTCCGGCACAACAATTCCCAGAGCGTGGAGCTGGAGAATGTCAC
CAGTTTGTTTAACACCGGCTGCGAAGGCCTGAGTCAGCACTATAGTATGC
TCCTCAAGAAGCACAGTGCTCCGCTGAAGCCGGTGGAGTTGCTGGATCTT
ATCTACATAGAGGACGATTCCAGCGATGAATACACCTCATTCCGGCAGCT
TTCGCAAACGACGCGCGAGGAGCTGTACACCATATCGCACTGGTTGGAGC
AAAATTTAAGGGAGTACACAAACATCTACGCGACGGAACGGGGCGAAGTG
GTTCTCCGATCGCTGCAGCTGCTCAAGGATCACCAAAAGAGCAACAGTTG
GGGTCACGAGGCTCTGAGACCGCGACACAGTGGACGCCAAACGGAGCCAA
AAAAGACAACCTCCGCTCGTCTTCAGCAAATATTCGAAAAGAAGGCGAAC
AAGTTATATTTACGCGCGACGCAGACGATTGAGCAGTCCACAGGGTTCTC
CATTAAGAAGGCATCATCGCACAGCGACCACCTGACCTCCGAGGATTTGA
TGGATGGCGATCAGGAACTGGACAAGTATCTGGTCATGTTGCTGGGACTG
CAGCGGTTACTTAACTGGGAGCGAGCCATCATGATCGACATTATTCCCCA
GTCGAAACACAACGAGGTATTCGCCACCTTGGCCTATAATGCCATCGATC
TGGTGGTTAAGGACGCTGAGGCCATTACGCAACGCATCCTGCGCTGCATT
TCCCGCAAGGAGTGGACCTCGGCGTTGGGAATATTCTCCGCCCTAAAGCG
GGTTATACTGCTGCAGCCGGATATTGACCGCACATACGATCCTGCGCAAA
GGGAACAGTTGAAAAAAGTACTAAAAAAGTTGCAGCACACCGGTGCCAAG
GCATTGGAGCATTTCCTGGACGTAGTCAAGGGCGAATCGAGCACCAATAT
TGTGGGCCAAAGCAATGTTCCAAAGGATGCCACCGTGCACGAGCTGACCT
CCAATACGATCTGGTTTATTGAGCACTTGTACGATCATTTCGATGTTATT
GGTTCCATTTTGGCACAGGATGTCCTGTACTCCACGCAATTGGACACCAT
TTTGATGAAGAAGGCGCTGCCAGTCGAGGAACGCAATAAGGCGCTCTTGG
CGATTTACATAAAGAAAGCTTTGGCCGAACTGAATCTTTCCATAATGAAC
AAGTGCGAGCAGTACAATGACCAGGCCACCAAGCACCTCTTCCGACTAAA
TAACATTCACTATATCCTCAAGTCGCTGCAACGCTCCAATCTTATTGATT
TGGTCACCTTGGCTGAGCCTGAGTGCGAACATAGTTACATGGAGATGATA
CGTGAACTGAAGGCTAGCTATCAAAAGACCTGGTCCAAGATGCTGGTCGG
CATCTATTCCTTGGATGAACTGCCCAAACCAGTGGCCGGCAAGGTCAAGG
ATAAGGATCGCAGTGTGCTCAAAGAGAGATTTTCTAACTTCAATAAGGAC
TTTGAGGAGGCATGCAAAATCCAGCGGGGCATCTCCATACCCGATGTGAT
CCTGCGAGAAGGCATCAAACGTGATAATGTGGAGCACATACTGCCCATCT
ACAATAGATTCTACGAAATTTACTCTGGAGTGCATTTTAGTAAGAATCCC
GACAAATACGTCAAGTACAGACAGCACGAGATCAACGCTATGCTGAGCAA
GCTCTTTGATGATTCGGCTTAGATGTTAAATGCAGGCCAGGCTTTAAGTG
CATTCCTTGTAAGTTCGTTGGGGGGCTTTAATTCAAACTCAATAAATATC
GTTTTAAAAAAAGCAAAAAAAAAAAAAAAA

FI18254.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8406331..8407071 822..1562 3660 99.6 Plus
chr3L 24539361 chr3L 8404303..8404814 255..766 2560 100 Plus
chr3L 24539361 chr3L 8407131..8407453 1563..1885 1600 99.7 Plus
chr3L 24539361 chr3L 8407716..8407909 2020..2213 970 100 Plus
chr3L 24539361 chr3L 8404066..8404233 87..254 840 100 Plus
chr3L 24539361 chr3L 8407523..8407656 1886..2019 670 100 Plus
chr3L 24539361 chr3L 8403927..8404015 1..89 430 98.9 Plus
chr3L 24539361 chr3L 8406213..8406278 766..831 315 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8414335..8415075 822..1562 3660 99.6 Plus
3L 28110227 3L 8412298..8412809 255..766 2560 100 Plus
3L 28110227 3L 8415135..8415457 1563..1885 1600 99.7 Plus
3L 28110227 3L 8415716..8415909 2020..2213 970 100 Plus
3L 28110227 3L 8412060..8412227 87..254 840 100 Plus
3L 28110227 3L 8415527..8415660 1886..2019 670 100 Plus
3L 28110227 3L 8411921..8412009 1..89 445 100 Plus
3L 28110227 3L 8414217..8414282 766..831 330 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:51:34 has no hits.

FI18254.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:52:44 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8403927..8404014 1..88 98 -> Plus
chr3L 8404068..8404233 89..254 100 -> Plus
chr3L 8404303..8404814 255..766 100 -> Plus
chr3L 8406214..8406278 767..831 98 -> Plus
chr3L 8406341..8407071 832..1562 100 -> Plus
chr3L 8407131..8407453 1563..1885 99 -> Plus
chr3L 8407523..8407656 1886..2019 100 -> Plus
chr3L 8407716..8407909 2020..2214 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-19 11:40:31 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
exo70-RA 1..2082 41..2122 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:03:51 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
exo70-RA 1..2082 41..2122 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:12:35 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
Exo70-RA 1..2082 41..2122 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 11:40:31 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
exo70-RA 69..2281 1..2214 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:03:51 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
exo70-RA 71..2283 1..2214 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:12:35 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
Exo70-RA 71..2283 1..2214 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:52:44 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8411921..8412008 1..88 100 -> Plus
3L 8412062..8412227 89..254 100 -> Plus
3L 8412298..8412809 255..766 100 -> Plus
3L 8414218..8414282 767..831 100 -> Plus
3L 8414345..8415075 832..1562 100 -> Plus
3L 8415135..8415457 1563..1885 99 -> Plus
3L 8415527..8415660 1886..2019 100 -> Plus
3L 8415716..8415909 2020..2214 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:52:44 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8411921..8412008 1..88 100 -> Plus
3L 8412062..8412227 89..254 100 -> Plus
3L 8412298..8412809 255..766 100 -> Plus
3L 8414218..8414282 767..831 100 -> Plus
3L 8414345..8415075 832..1562 100 -> Plus
3L 8415135..8415457 1563..1885 99 -> Plus
3L 8415527..8415660 1886..2019 100 -> Plus
3L 8415716..8415909 2020..2214 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:52:44 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8411921..8412008 1..88 100 -> Plus
3L 8412062..8412227 89..254 100 -> Plus
3L 8412298..8412809 255..766 100 -> Plus
3L 8414218..8414282 767..831 100 -> Plus
3L 8414345..8415075 832..1562 100 -> Plus
3L 8415135..8415457 1563..1885 99 -> Plus
3L 8415527..8415660 1886..2019 100 -> Plus
3L 8415716..8415909 2020..2214 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:03:51 Download gff for FI18254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8405162..8405327 89..254 100 -> Plus
arm_3L 8405021..8405108 1..88 100 -> Plus
arm_3L 8405398..8405909 255..766 100 -> Plus
arm_3L 8407318..8407382 767..831 100 -> Plus
arm_3L 8407445..8408175 832..1562 100 -> Plus
arm_3L 8408235..8408557 1563..1885 99 -> Plus
arm_3L 8408627..8408760 1886..2019 100 -> Plus
arm_3L 8408816..8409009 2020..2214 99   Plus

FI18254.hyp Sequence

Translation from 40 to 2121

> FI18254.hyp
MNNLDSSLQAHNKLEKEATNLALLKDRVDKYHDLSTQMSSILTIFEKRLG
NLEQTILPVYQETEQLQKRQQNLEATLNCLESVLSHYDVSQEVCQLIHQG
PVEGNISVFLDALAKLRDANDYFRHNNSQSVELENVTSLFNTGCEGLSQH
YSMLLKKHSAPLKPVELLDLIYIEDDSSDEYTSFRQLSQTTREELYTISH
WLEQNLREYTNIYATERGEVVLRSLQLLKDHQKSNSWGHEALRPRHSGRQ
TEPKKTTSARLQQIFEKKANKLYLRATQTIEQSTGFSIKKASSHSDHLTS
EDLMDGDQELDKYLVMLLGLQRLLNWERAIMIDIIPQSKHNEVFATLAYN
AIDLVVKDAEAITQRILRCISRKEWTSALGIFSALKRVILLQPDIDRTYD
PAQREQLKKVLKKLQHTGAKALEHFLDVVKGESSTNIVGQSNVPKDATVH
ELTSNTIWFIEHLYDHFDVIGSILAQDVLYSTQLDTILMKKALPVEERNK
ALLAIYIKKALAELNLSIMNKCEQYNDQATKHLFRLNNIHYILKSLQRSN
LIDLVTLAEPECEHSYMEMIRELKASYQKTWSKMLVGIYSLDELPKPVAG
KVKDKDRSVLKERFSNFNKDFEEACKIQRGISIPDVILREGIKRDNVEHI
LPIYNRFYEIYSGVHFSKNPDKYVKYRQHEINAMLSKLFDDSA*

FI18254.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Exo70-PA 693 CG7127-PA 1..693 1..693 3544 100 Plus

FI18254.pep Sequence

Translation from 40 to 2121

> FI18254.pep
MNNLDSSLQAHNKLEKEATNLALLKDRVDKYHDLSTQMSSILTIFEKRLG
NLEQTILPVYQETEQLQKRQQNLEATLNCLESVLSHYDVSQEVCQLIHQG
PVEGNISVFLDALAKLRDANDYFRHNNSQSVELENVTSLFNTGCEGLSQH
YSMLLKKHSAPLKPVELLDLIYIEDDSSDEYTSFRQLSQTTREELYTISH
WLEQNLREYTNIYATERGEVVLRSLQLLKDHQKSNSWGHEALRPRHSGRQ
TEPKKTTSARLQQIFEKKANKLYLRATQTIEQSTGFSIKKASSHSDHLTS
EDLMDGDQELDKYLVMLLGLQRLLNWERAIMIDIIPQSKHNEVFATLAYN
AIDLVVKDAEAITQRILRCISRKEWTSALGIFSALKRVILLQPDIDRTYD
PAQREQLKKVLKKLQHTGAKALEHFLDVVKGESSTNIVGQSNVPKDATVH
ELTSNTIWFIEHLYDHFDVIGSILAQDVLYSTQLDTILMKKALPVEERNK
ALLAIYIKKALAELNLSIMNKCEQYNDQATKHLFRLNNIHYILKSLQRSN
LIDLVTLAEPECEHSYMEMIRELKASYQKTWSKMLVGIYSLDELPKPVAG
KVKDKDRSVLKERFSNFNKDFEEACKIQRGISIPDVILREGIKRDNVEHI
LPIYNRFYEIYSGVHFSKNPDKYVKYRQHEINAMLSKLFDDSA*

FI18254.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24398-PA 693 GF24398-PA 1..693 1..693 3549 96 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14312-PA 693 GG14312-PA 1..693 1..693 3692 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15064-PA 694 GH15064-PA 1..694 1..693 3440 92.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Exo70-PA 693 CG7127-PA 1..693 1..693 3544 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12832-PA 694 GI12832-PA 1..694 1..693 3459 93.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23958-PA 890 GA23958-PA 440..890 243..693 2302 94.9 Plus
Dpse\GA23958-PA 890 GA23958-PA 1..253 1..252 1222 92.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25054-PA 906 GM25054-PA 456..906 243..693 2413 99.8 Plus
Dsec\GM25054-PA 906 GM25054-PA 1..275 1..272 1281 90.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12974-PA 861 GJ12974-PA 411..861 243..693 2282 94.5 Plus
Dvir\GJ12974-PA 861 GJ12974-PA 1..245 1..244 1178 91.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18040-PA 694 GK18040-PA 1..694 1..693 3347 91.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20741-PA 693 GE20741-PA 1..693 1..693 3683 99.4 Plus