Clone FI18276 Report

Search the DGRC for FI18276

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:182
Well:76
Vector:pFlc-1
Associated Gene/TranscriptCG6422-RB
Protein status:FI18276.pep: gold
Sequenced Size:2826

Clone Sequence Records

FI18276.complete Sequence

2826 bp assembled on 2012-01-17

GenBank Submission: BT133047.1

> FI18276.complete
GCGGTGGTGTCAGTGTATGTGGTTCTTTAAGTAAAAAAAATATATCGGAG
TTTATAAAAACTTTTAAGCAACAAACTCTGCCTGCCTTGTGTTTTTATAT
CATTTATTTTAAAAAGGGGCAAAAAGTGCAGCAAATGTCAGGCGTGGATC
AGATGAAAATACCAGGAAACACAGGTATATAACCTACCACCACAGACAGA
GCGTTTTCCCATAGACAGGAACTACTCGACGGCCGAGTTTTCGATCGTAT
TTCTTGCTTAATGTGCGGTTTTAATGCGATTTTCTCTGTTTACCATGCCC
CACAATGCAGCTAAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCA
AGTCGATGAGGCCTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAG
TCTCTGGCAATGACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTC
AAGGAGAATTGCAACACTCCATGGAACAATATGAACAAGGGCCGAAAGGC
GAACGCCAACCATGATTCATATAGAAGACATGGTCATAGTATTCCCAATA
ACACACGACGCGACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCA
GCAGCACAGTCGTTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGA
CAACAGAACAAGCGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCA
AGAAGACAACCTGGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCG
AGAGCAGCGTCCACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCC
ACCACCACCCATGGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGG
ATTTGCCGAATAACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATC
GATTTGGGCTATTCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACAC
GGCACCGCCATTGGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGA
ACTTCCTGAAATACGAGCACAAGGGCTTGGGAAATAACAATAACTTCAGC
AGAGCCAAGGTTTCGCCCACGGGACCTGTTCGCAGGAATCTAGGGCCCCA
GCAGCCTGTCCACCATGCCGCCCCACGTCCAGCGACCAATGCCGGTCCAT
TTGGGCCACCGAACGCCAGACGACACGACGGCGGGCCGCATCCAAGCCGG
AACTCGGAGCGCTCGGGCAACTATTCCAGTTTCCGCGGCAGCGAGTTTGA
GAGTGCTTCGAAGTTCGAATACCGCGACGAGAACCAATCACGACCGGTGG
AAGCCACATCTGCAACCGAAGAGCTGCCTGTCGATTCCCAACTCGTGTTG
GACGAATTAAAAGACAAAAACAATTACAACCCAAAAGTGTTGGACTTGAA
AAAAGCCGGATCGGCCAGATTCTTTGTCATCAAATCGTACTCCGAAGATG
ACATCCATCGCAGTATAAAGTATGAGATTTGGTGCTCAACCGATCACGGC
AATAAGAGATTGGACGATGCCTTCAAGGAGCGACACGAAGAGGGCGGCAA
CATAATGCTGTTCTTCTCGGTGAATGGATCTGGCCATTTCTGCGGCATGG
CACAAATGATGACGCCGGTCGACTACAACTCAACGTCGAGCGTCTGGTCG
CAGGACAAGTGGAGGGGCAAGTTCAAGGTGAAATGGATATATGTCAAAGA
TGTGCCTAACGGAACGCTGCGTCACATTCGACTGGAGAACAATGAGAATA
AGTCGGTGACGAACTCAAGGGACACCCAGGAAGTGCCCAACGACAAAGGC
ATCGAGGTGCTGCAGATTTTGCACTCGTACAACCATTCAACGTCCATATT
CGATGACTTCTTCCACTATGAAAAGAAGCAGGAGGAAGAGGTGTCCTCGA
AGCGTCCGCCAATGCATGGGCCCGATGGCAACAACCACGCGCCTGCCCCA
CTCGCCCGCAGCTTCAATCGCCAGGCGGACGACAAGGACAGGGATCGCGA
CGGACGCGGCGGCATGTCACAAAAGCACTTCAATTCTGGAGGAGGAGCTG
GTTTCCGTAATCCAGGTCATAGGGGTGGCGCCGGCAGTGGCGGATCACAC
AACAATTACAGCGAGTATCGTCGAGGCTTCGACATTCATAAATCAAGCAG
CGACTATCAGTTCAAGGACCGCGATGGCCCGGACTTTGACAGAGAAAATG
ACTTTGGGTCCCACTACGGGTCCAATAACCGAAAAAATGAATACAAACAC
AATAATACGAACAAGGCCAGGTTAAAAACCCGAGACCGTGACTTTAGTAC
TGAACAAATTAAAATCGGCGTGCGCTTTAAGGACACGGACAAGGATAAAA
TGCGAAGCAATGAATATTCATAAATTTACTGAGCTGCTGCGGTAGAATTC
TTTTTTAAATGATATTGAATGGACTCCCACAATCCGTTGAATTGCTTAGA
GACGTTAAATTATAATTTTTAGATTTTTTAACCATTGCGTGTACAAGATA
AAATCCCGATTCATGGCGAGCATATATAACGAACATGTGGGATCTAGGAT
TAACGATTAAAGTATGATAACATTTTTACGTAATTATTTATTACAATATT
TATATAAATCTATTGACGCTCACATTGAACAGTTCATAAAAAAATTAATG
TTCGATTTTGCCGATATATATACAACATTTATAAACACCAAGGAGTCTGC
TTCAGCCATTCCTTGTAGTTGCACTGTAACAATTTATACAACTTATTTGA
ATCTAAAGTGTACACGACTTATGTATGTATAATATAATTAAAGTAACCAA
TCCATCAATTAAAAAAAAAAAAAAAA

FI18276.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20857872..20858788 2332..1416 4540 99.7 Minus
chr3R 27901430 chr3R 20858852..20859516 1418..754 3280 99.5 Minus
chr3R 27901430 chr3R 20857330..20857810 2810..2330 2390 99.8 Minus
chr3R 27901430 chr3R 20861606..20861864 407..149 1295 100 Minus
chr3R 27901430 chr3R 20859577..20859723 754..608 735 100 Minus
chr3R 27901430 chr3R 20862129..20862244 119..4 580 100 Minus
chr3R 27901430 chr3R 20861397..20861505 514..406 530 99.1 Minus
chr3R 27901430 chr3R 20859808..20859903 609..514 480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25034687..25035603 2332..1416 4570 99.9 Minus
3R 32079331 3R 25035667..25036331 1418..754 3325 100 Minus
3R 32079331 3R 25034144..25034625 2811..2330 2395 99.8 Minus
3R 32079331 3R 25038420..25038678 407..149 1295 100 Minus
3R 32079331 3R 25036392..25036538 754..608 735 100 Minus
3R 32079331 3R 25038943..25039058 119..4 580 100 Minus
3R 32079331 3R 25038211..25038319 514..406 545 100 Minus
3R 32079331 3R 25036623..25036718 609..514 480 100 Minus
Blast to na_te.dros performed 2019-03-15 12:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 1838..1912 2647..2577 122 66.7 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9720..9794 2647..2577 122 66.7 Minus

FI18276.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:38:38 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20857330..20857808 2332..2810 93 <- Minus
chr3R 20857873..20858785 1419..2331 99 <- Minus
chr3R 20858852..20859516 754..1418 99 <- Minus
chr3R 20859578..20859721 610..753 100 <- Minus
chr3R 20859808..20859902 515..609 100 <- Minus
chr3R 20861397..20861504 407..514 99 <- Minus
chr3R 20861607..20861860 153..406 100 <- Minus
chr3R 20862032..20862065 119..152 100 <- Minus
chr3R 20862130..20862248 1..118 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-17 10:16:35 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 1..2100 274..2373 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:07 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 1..2100 274..2373 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:06:33 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 1..2100 274..2373 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 10:16:35 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 18..2828 1..2810 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:07 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 22..2832 1..2810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:06:33 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
CG6422-RB 22..2832 1..2810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:38 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25036393..25036536 610..753 100 <- Minus
3R 25036623..25036717 515..609 100 <- Minus
3R 25038211..25038318 407..514 100 <- Minus
3R 25034145..25034623 2332..2810 99 <- Minus
3R 25034688..25035600 1419..2331 99 <- Minus
3R 25035667..25036331 754..1418 100 <- Minus
3R 25038421..25038674 153..406 100 <- Minus
3R 25038846..25038879 119..152 100 <- Minus
3R 25038944..25039062 1..118 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:38 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25036393..25036536 610..753 100 <- Minus
3R 25036623..25036717 515..609 100 <- Minus
3R 25038211..25038318 407..514 100 <- Minus
3R 25034145..25034623 2332..2810 99 <- Minus
3R 25034688..25035600 1419..2331 99 <- Minus
3R 25035667..25036331 754..1418 100 <- Minus
3R 25038421..25038674 153..406 100 <- Minus
3R 25038846..25038879 119..152 100 <- Minus
3R 25038944..25039062 1..118 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:38 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25036393..25036536 610..753 100 <- Minus
3R 25036623..25036717 515..609 100 <- Minus
3R 25038211..25038318 407..514 100 <- Minus
3R 25034145..25034623 2332..2810 99 <- Minus
3R 25034688..25035600 1419..2331 99 <- Minus
3R 25035667..25036331 754..1418 100 <- Minus
3R 25038421..25038674 153..406 100 <- Minus
3R 25038846..25038879 119..152 100 <- Minus
3R 25038944..25039062 1..118 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:07 Download gff for FI18276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20864143..20864396 153..406 100 <- Minus
arm_3R 20864568..20864601 119..152 100 <- Minus
arm_3R 20864666..20864784 1..118 99   Minus
arm_3R 20859867..20860345 2332..2810 99 <- Minus
arm_3R 20860410..20861322 1419..2331 99 <- Minus
arm_3R 20861389..20862053 754..1418 100 <- Minus
arm_3R 20862115..20862258 610..753 100 <- Minus
arm_3R 20862345..20862439 515..609 100 <- Minus
arm_3R 20863933..20864040 407..514 100 <- Minus

FI18276.hyp Sequence

Translation from 273 to 2372

> FI18276.hyp
MRFSLFTMPHNAAKSVEERNIPWSQQVDEASYENLSSPTHDEVSGNDNSM
QFQYPPFNFKENCNTPWNNMNKGRKANANHDSYRRHGHSIPNNTRRDEHQ
VNPWNSRKPAAQSFRNENDQPSTKLDNRTSDEAQNQEVVAAPKKTTWASI
ASQPAKLTSRAASTTSNSKKKGPGMPPPPMVPGKHNLDVNVWDLPNNKPP
PVPSPPSPIDLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEHK
GLGNNNNFSRAKVSPTGPVRRNLGPQQPVHHAAPRPATNAGPFGPPNARR
HDGGPHPSRNSERSGNYSSFRGSEFESASKFEYRDENQSRPVEATSATEE
LPVDSQLVLDELKDKNNYNPKVLDLKKAGSARFFVIKSYSEDDIHRSIKY
EIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPVD
YNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRD
TQEVPNDKGIEVLQILHSYNHSTSIFDDFFHYEKKQEEEVSSKRPPMHGP
DGNNHAPAPLARSFNRQADDKDRDRDGRGGMSQKHFNSGGGAGFRNPGHR
GGAGSGGSHNNYSEYRRGFDIHKSSSDYQFKDRDGPDFDRENDFGSHYGS
NNRKNEYKHNNTNKARLKTRDRDFSTEQIKIGVRFKDTDKDKMRSNEYS*

FI18276.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6422-PB 699 CG6422-PB 1..699 1..699 3804 100 Plus
CG6422-PD 700 CG6422-PD 9..700 8..699 3751 99.6 Plus
CG6422-PC 694 CG6422-PC 3..694 8..699 3751 99.6 Plus
CG6422-PA 700 CG6422-PA 9..700 8..699 3751 99.6 Plus

FI18276.pep Sequence

Translation from 273 to 2372

> FI18276.pep
MRFSLFTMPHNAAKSVEERNIPWSQQVDEASYENLSSPTHDEVSGNDNSM
QFQYPPFNFKENCNTPWNNMNKGRKANANHDSYRRHGHSIPNNTRRDEHQ
VNPWNSRKPAAQSFRNENDQPSTKLDNRTSDEAQNQEVVAAPKKTTWASI
ASQPAKLTSRAASTTSNSKKKGPGMPPPPMVPGKHNLDVNVWDLPNNKPP
PVPSPPSPIDLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEHK
GLGNNNNFSRAKVSPTGPVRRNLGPQQPVHHAAPRPATNAGPFGPPNARR
HDGGPHPSRNSERSGNYSSFRGSEFESASKFEYRDENQSRPVEATSATEE
LPVDSQLVLDELKDKNNYNPKVLDLKKAGSARFFVIKSYSEDDIHRSIKY
EIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPVD
YNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRD
TQEVPNDKGIEVLQILHSYNHSTSIFDDFFHYEKKQEEEVSSKRPPMHGP
DGNNHAPAPLARSFNRQADDKDRDRDGRGGMSQKHFNSGGGAGFRNPGHR
GGAGSGGSHNNYSEYRRGFDIHKSSSDYQFKDRDGPDFDRENDFGSHYGS
NNRKNEYKHNNTNKARLKTRDRDFSTEQIKIGVRFKDTDKDKMRSNEYS*

FI18276.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18592-PA 696 GF18592-PA 9..696 8..699 2747 82.4 Plus
Dana\GF10271-PA 713 GF10271-PA 244..432 382..555 201 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12295-PA 700 GG12295-PA 9..700 8..699 3258 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22368-PA 727 GH22368-PA 46..727 12..698 1842 59.3 Plus
Dgri\GH24419-PA 753 GH24419-PA 280..416 382..516 187 32.6 Plus
Dgri\GH15361-PA 755 GH15361-PA 282..418 382..516 187 32.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ythdf-PB 699 CG6422-PB 1..699 1..699 3804 100 Plus
Ythdf-PD 700 CG6422-PD 9..700 8..699 3751 99.6 Plus
Ythdf-PC 694 CG6422-PC 3..694 8..699 3751 99.6 Plus
Ythdf-PA 700 CG6422-PA 9..700 8..699 3751 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12962-PA 698 GI12962-PA 248..384 382..516 184 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21952-PA 588 GL21952-PA 12..584 11..584 1983 73.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19581-PA 633 GA19581-PA 5..628 81..697 2040 70.1 Plus
Dpse\GA28277-PA 735 GA28277-PA 261..419 382..526 186 29.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17761-PA 700 GM17761-PA 7..700 6..699 3656 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18245-PA 596 GD18245-PA 9..596 112..699 3110 98.8 Plus
Dsim\GD13329-PA 721 GD13329-PA 255..413 382..526 184 29.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14120-PA 686 GJ14120-PA 2..686 10..698 1761 57.8 Plus
Dvir\GJ13107-PA 706 GJ13107-PA 262..398 382..516 187 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12904-PA 723 GK12904-PA 12..723 11..698 2067 66 Plus
Dwil\GK20378-PA 716 GK20378-PA 246..436 382..560 189 28.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10748-PA 700 GE10748-PA 9..700 8..699 3302 96.2 Plus