Clone FI18303 Report

Search the DGRC for FI18303

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:183
Well:3
Vector:pOT2
Associated Gene/Transcriptnab-RB
Protein status:FI18303.pep: gold
Sequenced Size:2490

Clone Sequence Records

FI18303.complete Sequence

2490 bp assembled on 2012-02-08

GenBank Submission: BT133225.1

> FI18303.complete
CTCGAGCTGAGCGGATCGCAGAGATTAGAGAGACTGAAAGTGGCGCGAGT
TTCGTTACTGCCGTTACAATCTTCTGTTTAACTCTCCCTAAAGAGTCTTA
TATACTTATCTAGTGTAGTTAATCGTAGCCTGTAGTACTCTTCCGATCCT
CGATCCCTGATCCTAGATCCTAGTTTGCATGCATTTCGTCCTGGTTCTTT
GTGTTTGTGCCTGGTATTTGATCGCCTTTCGTGCCAATCGCGTTAATTTA
ATCCGTCATCGTTTGCCAACGTGTTTTATCGCAATGGAGGCGAGCTCGAA
TCCCACAACACCCACGACGGCGGTGGCCACCACCACATCCACATCCAGTC
CATCGCCAGCTGCCAGCACCAGCAGCAAAGGACACAGCCAATCCGCAACA
GCATCTGCATCCGCCTCCGCCACACAGTCACAGCTGCTGACCACCAGTCT
GGAAATGCCCAAGACGGAGGATCTGTACAATCTGTCCGTAGCCAGCGGAC
TATCCGAGGGACAGAGATCGCTCTCGGGCGCTCCGTCGGCCTCCTCCAGT
CCCATTATGAGTCCGCAGGGCAAGATCTTTGGAAGGAATGCGAATGGAAC
AATGATCACCACATCGCGACCGGGCAACGAGGCGGAGGTGCAGCTGTACC
GGGTACTCCAGAGGGCCAGTCTGTTGGCCTACTACGACACCCTGCTGGAA
ATGGGCGGTGATGATGTGCAGCAGTTGTACGACGCCGGCGAGGAGGAGTT
CCTCGAGATCATGGCCCTGGTCGGCATGGCTTCCAAGCCACTTCACGTCC
GCCGGCTGCAGAAGGCGCTGCACGAGTGGGCCAACAATCCGGGTCTCTTC
CAGGGACCCATGATGCCGCATCTGGGTCTCTGCGAAACGCCACCGAAACC
GGCATTGATCTTCAATCCGGACACCACGCCCGCTCTGCCCCGCCAGAAAT
TTCCCTCGTTCAATCCCTCGGGTTCCTCCTTTATGCCCTCGCCGGTTCCC
CCAGCTCCACTGCCCGCTTCCGCCTCGGTTCCCGCTCCCACTGTCCCCTT
GGCTACCCAGATCAGCTGTCCCTCAGCTCCTTCGGTGCCCTTGCCGCTGG
TACTGCCCCCCAACCCGCTGACCAGCAGTCCGCATCCCTCGGCGAACAGT
AACCTTCCGGCGAACACCGCCCACCAGGTCTCCTCCAGTTCGCCCCAGCT
CACACCTGTTCTGACCGAAGCGCAGATCCAGCGGATAACCATGTGTGCTG
ATAAGATTGGCAGGCAACTGCCCCAGAGGGAACCGCGCGCCCAGACCACC
AGGAAGCGAACCACCCGGGAACTGGAGCAGGTTATCGCCATGGGGGAACA
GGATCCGCGGCGCATGGACGAGATCCGTAAGTACTCGGCCATCTACGGCC
GTTTCGATTGCAAAAGGCGGCCGGAGAAGCCGCTGACCTTGCACGAGGTG
TGCGTCAATGAGGCGGCGGCCCAGCTGTGTCGGAATCCCCAGACCATCTG
GCTGCTGACCCGCCGGGATGAGCTGTTCCCCCTGGCACGGCAGATTGTCA
AGGATGCCGGGTTCGGCCACTCGGCCAGCATTGCCCGGTACGGTGGTCTG
CTCACCCAGCTGCCGTCGCAGGGAGCGGGATTGGGCGGAGGACGGGCTCC
TGGCGACACGGACTGCGAGTCCAGTGACGCCGCCGTGCCCTCCAAGCGAC
AGCGACTCTCCTCTACGGAGGCTGCGCAGCTGCCGCTCGACTTGAATCGG
GAAGCTGTCGAGGATTCGCGCTACAATCTGTTCGCCATGTACCAAAAGTT
TGCCAAGCCGCCATTTGATCTGTCGGAAATTGCCAAGTTCTCAGTCAGCA
AGGCGGCTGATTATGAGGACAACGATTCGCGCTTCTCGTTCAGCAACTCA
AGCTCGCCGACCATGCCAGTGAGTATGTGTTGGAGCTCTACGAGGGCATT
CCGTTACCCGGGAAAGGCCGAAGAATAAGAGAAATACATTTAATCCTCCA
CAGACGCCATGCAATGGAATGGAAGGTGAGCGATCGCCCGTCTCTCGCCA
GATGGAGACATCGTCGCCGCCACGGGAATCAGTGGATCTGAGTGGCACAT
CCTCGGGCGCAGCTCTAAGTGGAGTCCAGGTCATCTCCGCGGCGGGGGAC
AACATTATCGCGGTGGCCAATCCCGCCCTGGCACTCAGTCCCGCTTTGAA
CGAGGTGCTCGCGCTCAAGAGGAGTGCTGCTTCACCAGAGACTTAGTTCT
GGAGAAAATTGGATGGATGCCATTCGTAGTGCCAGATTGGGTTACCCACA
CCCAAATCGTTTTGATTCCAGTGCAATTCAACTAGATTAGTATCGTCTAA
AAACATAACTTTATTTAAGGAGCTTTAAGACAACGATTATTTTGTAGTCT
CTGTGATCTATACTAAAACACTGTAATAAAATCATTATTTATCTATCAAT
AAAAAGTTATAATAATTTTTAAAAAAAAAAAAAAAAAAAA

FI18303.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4154624..4155500 1751..875 4385 100 Minus
chr3L 24539361 chr3L 4153004..4153631 2470..1843 3140 100 Minus
chr3L 24539361 chr3L 4159717..4160318 602..1 3010 100 Minus
chr3L 24539361 chr3L 4155608..4155882 877..603 1375 100 Minus
chr3L 24539361 chr3L 4153753..4153845 1842..1750 465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4155238..4156114 1751..875 4385 100 Minus
3L 28110227 3L 4153615..4154245 2473..1843 3155 100 Minus
3L 28110227 3L 4160331..4160932 602..1 3010 100 Minus
3L 28110227 3L 4156222..4156496 877..603 1375 100 Minus
3L 28110227 3L 4154367..4154459 1842..1750 465 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:09:37 has no hits.

FI18303.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:10:58 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4153052..4153631 1843..2422 100 <- Minus
chr3L 4153753..4153844 1751..1842 100 <- Minus
chr3L 4154625..4155499 876..1750 100 <- Minus
chr3L 4155610..4155882 603..875 100 <- Minus
chr3L 4159717..4160318 1..602 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-08 14:27:39 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
nab-RB 1..1695 284..1978 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:08:20 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
nab-RB 1..1695 284..1978 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:23:08 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
nab-RB 1..1695 284..1978 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 14:27:38 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
nab-RB 1..2470 1..2470 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:08:20 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
nab-RB 1..2470 1..2470 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:23:08 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
nab-RB 1..2470 1..2470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:10:58 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4153618..4154245 1843..2470 100 <- Minus
3L 4154367..4154458 1751..1842 100 <- Minus
3L 4155239..4156113 876..1750 100 <- Minus
3L 4156224..4156496 603..875 100 <- Minus
3L 4160331..4160932 1..602 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:10:58 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4153618..4154245 1843..2470 100 <- Minus
3L 4154367..4154458 1751..1842 100 <- Minus
3L 4155239..4156113 876..1750 100 <- Minus
3L 4156224..4156496 603..875 100 <- Minus
3L 4160331..4160932 1..602 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:10:58 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4153618..4154245 1843..2470 100 <- Minus
3L 4154367..4154458 1751..1842 100 <- Minus
3L 4155239..4156113 876..1750 100 <- Minus
3L 4156224..4156496 603..875 100 <- Minus
3L 4160331..4160932 1..602 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:08:20 Download gff for FI18303.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4156224..4156496 603..875 100 <- Minus
arm_3L 4153618..4154245 1843..2470 100 <- Minus
arm_3L 4154367..4154458 1751..1842 100 <- Minus
arm_3L 4155239..4156113 876..1750 100 <- Minus
arm_3L 4160331..4160932 1..602 100   Minus

FI18303.hyp Sequence

Translation from 178 to 1977

> FI18303.hyp
MHFVLVLCVCAWYLIAFRANRVNLIRHRLPTCFIAMEASSNPTTPTTAVA
TTTSTSSPSPAASTSSKGHSQSATASASASATQSQLLTTSLEMPKTEDLY
NLSVASGLSEGQRSLSGAPSASSSPIMSPQGKIFGRNANGTMITTSRPGN
EAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGM
ASKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPPKPALIFNPDTT
PALPRQKFPSFNPSGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSA
PSVPLPLVLPPNPLTSSPHPSANSNLPANTAHQVSSSSPQLTPVLTEAQI
QRITMCADKIGRQLPQREPRAQTTRKRTTRELEQVIAMGEQDPRRMDEIR
KYSAIYGRFDCKRRPEKPLTLHEVCVNEAAAQLCRNPQTIWLLTRRDELF
PLARQIVKDAGFGHSASIARYGGLLTQLPSQGAGLGGGRAPGDTDCESSD
AAVPSKRQRLSSTEAAQLPLDLNREAVEDSRYNLFAMYQKFAKPPFDLSE
IAKFSVSKAADYEDNDSRFSFSNSSSPTMPVSMCWSSTRAFRYPGKAEE*

FI18303.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
nab-PB 564 CG33545-PB 1..564 36..599 2903 100 Plus
nab-PD 554 CG33545-PD 1..552 36..586 2805 99.3 Plus
nab-PC 625 CG33545-PC 1..545 36..580 2798 100 Plus

FI18303.pep Sequence

Translation from 178 to 1977

> FI18303.pep
MHFVLVLCVCAWYLIAFRANRVNLIRHRLPTCFIAMEASSNPTTPTTAVA
TTTSTSSPSPAASTSSKGHSQSATASASASATQSQLLTTSLEMPKTEDLY
NLSVASGLSEGQRSLSGAPSASSSPIMSPQGKIFGRNANGTMITTSRPGN
EAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGM
ASKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPPKPALIFNPDTT
PALPRQKFPSFNPSGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSA
PSVPLPLVLPPNPLTSSPHPSANSNLPANTAHQVSSSSPQLTPVLTEAQI
QRITMCADKIGRQLPQREPRAQTTRKRTTRELEQVIAMGEQDPRRMDEIR
KYSAIYGRFDCKRRPEKPLTLHEVCVNEAAAQLCRNPQTIWLLTRRDELF
PLARQIVKDAGFGHSASIARYGGLLTQLPSQGAGLGGGRAPGDTDCESSD
AAVPSKRQRLSSTEAAQLPLDLNREAVEDSRYNLFAMYQKFAKPPFDLSE
IAKFSVSKAADYEDNDSRFSFSNSSSPTMPVSMCWSSTRAFRYPGKAEE*

FI18303.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23885-PA 649 GF23885-PA 62..569 83..581 2090 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14216-PA 631 GG14216-PA 1..552 36..581 2770 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15553-PA 300 GH15553-PA 34..215 58..233 675 82 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
nab-PB 564 CG33545-PB 1..564 36..599 2903 100 Plus
nab-PD 554 CG33545-PD 1..552 36..586 2805 99.3 Plus
nab-PC 625 CG33545-PC 1..545 36..580 2798 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16828-PA 665 GI16828-PA 84..590 91..580 1805 75 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12736-PA 621 GL12736-PA 68..521 82..566 1931 79.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28207-PA 678 GA28207-PA 67..578 81..566 2004 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14008-PA 323 GM14008-PA 1..283 36..318 1393 96.5 Plus
Dsec\GM14009-PA 273 GM14009-PA 1..194 388..581 1030 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13289-PA 664 GD13289-PA 1..585 36..581 2252 90.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12576-PA 657 GJ12576-PA 79..580 85..580 1915 79.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10073-PA 671 GK10073-PA 52..607 61..598 1953 75.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20644-PA 632 GE20644-PA 1..550 36..581 2756 95.8 Plus