Clone FI18307 Report

Search the DGRC for FI18307

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:183
Well:7
Vector:pOT2
Associated Gene/TranscriptSCAR-RB
Protein status:FI18307.pep: gold
Sequenced Size:2679

Clone Sequence Records

FI18307.complete Sequence

2679 bp assembled on 2012-02-09

GenBank Submission: BT133231.1

> FI18307.complete
TGATTTCGATGAGGACGCACTAATTTACGGGTTTGCCAATTTGGAGATAA
TTGTCAATCGCGCCCGACCATGCCGCTGCCCAAACGATCCATAGAACCCG
TGCATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAG
CTGGAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTC
CTCGCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACG
TGGGCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGC
CTAGCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTT
GACGGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATC
AACAGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATAT
GCCCAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGA
CGATGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTG
AGTTGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGAC
AAGGGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGC
TGCTGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACA
ATACGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTG
ATGCCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGA
AGCCGGATACGGAATTCAGCTAGTCAAAATACAGACTGTGGGCGAGGCTG
ACATCGATTTGCGGCATAGCACTCTCGATGCGCACCACCAAGTTGTCGAT
ATGGGAGTGTACGATACACGTCCGCCACGTCCTAACTCGATCGAATTGAA
CCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACCTACGAGCAGCTTC
CACCGCAGATGGGTAATCAGTATGCTGCCACCTTCGGCAACGGCATGGGT
GGCCCCCAGCAGATGCACATGCAGCATCAGCAGATGTATGACGCCGGAAT
GTATCAGTCGCATGCGCTGTACGGCCAAACTGGACAGGGAGTGATGTCGC
CGGAGCCCATCTACGGACCGGGAACACCGTCGCGTAACAAACCGCGTCCG
TCGCAGCCGCCACCGGCTCCGCCATCGAATGGCAGCGGTGGTGGTACGCC
CACAGCCTCCAATGCCAACACTCCGACAAGGGGCAGAAGTATGTCGACCA
GTCGGGATGCCTTGCCACCGCCTCCACCAGTTCCAGACGTCATTTCACCA
ATGTCTGGCATGAACGGAGTCAACAGCGGGCATATGGCGGCCAAACTGCT
TGGCCGGGCGAACAGTTCGTCGGGAGCTGGATCTCCCAACAGCGTCCAGA
ATGCCAATGATATGGTCATGACGCAACTGAGCAATACTTTCCACAGCATC
GGTATGACGGGCAATCAACTGAACTCCCTTAGCGACTTGCCGCCACCGCC
GCCGGTTCCAGATCAGCACTCGCCTAAGATGTCGCCACCTAATGCCGCGC
CACCACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGGCATGGGCAGTGGC
AACCAACACACGCTGCGCCCGCATCAAATTCTTCCCAAATCACTGGCCAA
TGGCGAAATGCAGCAGCCCGGCCAACAAAATGGTGTGCCTCACATTGTCG
CACCCAAGAAGATGCTGCCTCCATTCCATGACCCACGCAACGACTTGATG
AAGGCCATTCGAGATGGTATTACTCTACGTAAAGTTGAAAAGTCAGAGCA
AAAGGAAATTGAACGAAACGCGGCGCCATTGGATGTGGCTTCAATCTTGG
CCAGACGTGTGGCTATCGAATTATCCGAGTCCGAGGATTCGGATAGCGAA
GACGACAGCGAGGGCTGGATGGAACCGAACGAAACATCGGCTTGATCCCT
GATTAACTCGTTAAAGCCTGACATAATTCTAAAAAACAAAAAGAAGAAGT
AATTCCAAAGAGAATTAATCCATACGATGGTCGAAACCAAGCGTGGTATG
AAATTGGATTACACAAAAGCACCAAAGCTTTTCTACCACCCTTTATACAA
TATACACCTAATCCTAAATAATATGTCTAAAATCAAAAGTTTCATTGAAT
TGTATATACACCAACGAGTAATTATCGTTAAATTAATCGCTATAGTGAAC
GAACGCATTTGCATTTTAAGCCTAGACGACAATCCAAGGAAAGCGATTTA
AAAGACTTGCTAATTTTGTTCGCTTCTTTGGAGTCAAGGTCTGAGTAGAT
ATGGGCTTCTGTATCATAGTAGTCGGTGTTTGGATATTAAATTATAAATA
ATCGATATTATCACTGAACTCAATCCTACCCCAACTTGCAATCGATACGA
TTAATATAAAACATTTATCCAAAATGAAAATTTAGAATTTTGTAAATACA
AACACATTAAAATATATCGAACTCCGTAGCATTTCAGTATACTCAACAAG
CTATGAAATTGTATTATCCTTGTGAAAGTTAAATACCTGTATAATTAATA
AAATATGTTTCACGAATATAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI18307.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10976654..10977462 6..814 4045 100 Plus
chr2L 23010047 chr2L 10980242..10981049 1816..2623 4040 100 Plus
chr2L 23010047 chr2L 10979200..10979868 898..1566 3345 100 Plus
chr2L 23010047 chr2L 10979932..10980187 1564..1819 1280 100 Plus
chr2L 23010047 chr2L 10977636..10977719 815..898 420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977898..10978706 6..814 4045 100 Plus
2L 23513712 2L 10981486..10982294 1816..2624 4045 100 Plus
2L 23513712 2L 10980444..10981112 898..1566 3345 100 Plus
2L 23513712 2L 10981176..10981431 1564..1819 1280 100 Plus
2L 23513712 2L 10978880..10978963 815..898 420 100 Plus
Blast to na_te.dros performed 2019-03-15 13:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
FB 1106 FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). 235..363 2481..2616 115 58.7 Plus

FI18307.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:16:39 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10976650..10977462 1..814 99 -> Plus
chr2L 10977636..10977719 815..898 100 -> Plus
chr2L 10979201..10979868 899..1566 100 -> Plus
chr2L 10979935..10980184 1567..1816 100 -> Plus
chr2L 10980243..10981049 1817..2623 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-09 13:15:27 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RB 1..1926 70..1995 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:10:04 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RB 1..1926 70..1995 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:26:44 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RB 1..1926 70..1995 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-09 13:15:27 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RB 185..2807 1..2623 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:10:04 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RB 193..2815 1..2623 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:26:44 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RB 193..2815 1..2623 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:39 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10977894..10978706 1..814 99 -> Plus
2L 10978880..10978963 815..898 100 -> Plus
2L 10980445..10981112 899..1566 100 -> Plus
2L 10981179..10981428 1567..1816 100 -> Plus
2L 10981487..10982293 1817..2623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:39 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10977894..10978706 1..814 99 -> Plus
2L 10978880..10978963 815..898 100 -> Plus
2L 10980445..10981112 899..1566 100 -> Plus
2L 10981179..10981428 1567..1816 100 -> Plus
2L 10981487..10982293 1817..2623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:39 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10977894..10978706 1..814 99 -> Plus
2L 10978880..10978963 815..898 100 -> Plus
2L 10980445..10981112 899..1566 100 -> Plus
2L 10981179..10981428 1567..1816 100 -> Plus
2L 10981487..10982293 1817..2623 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:10:04 Download gff for FI18307.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10977894..10978706 1..814 99 -> Plus
arm_2L 10978880..10978963 815..898 100 -> Plus
arm_2L 10980445..10981112 899..1566 100 -> Plus
arm_2L 10981179..10981428 1567..1816 100 -> Plus
arm_2L 10981487..10982293 1817..2623 100   Plus

FI18307.hyp Sequence

Translation from 69 to 1994

> FI18307.hyp
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQ
LVKIQTVGEADIDLRHSTLDAHHQVVDMGVYDTRPPRPNSIELNRSYQSE
QIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHMQHQQMYDAGMYQSHAL
YGQTGQGVMSPEPIYGPGTPSRNKPRPSQPPPAPPSNGSGGGTPTASNAN
TPTRGRSMSTSRDALPPPPPVPDVISPMSGMNGVNSGHMAAKLLGRANSS
SGAGSPNSVQNANDMVMTQLSNTFHSIGMTGNQLNSLSDLPPPPPVPDQH
SPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQILPKSLANGEMQQP
GQQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEIERN
AAPLDVASILARRVAIELSESEDSDSEDDSEGWMEPNETSA*

FI18307.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-PB 641 CG4636-PB 1..641 1..641 3385 100 Plus
SCAR-PF 647 CG4636-PF 1..647 1..641 3368 99.1 Plus
SCAR-PD 674 CG4636-PD 1..674 1..641 3341 95.1 Plus
SCAR-PC 640 CG4636-PC 1..640 1..641 3223 95.8 Plus
SCAR-PE 632 CG4636-PE 1..613 1..641 3201 95.5 Plus

FI18307.pep Sequence

Translation from 69 to 1994

> FI18307.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQ
LVKIQTVGEADIDLRHSTLDAHHQVVDMGVYDTRPPRPNSIELNRSYQSE
QIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHMQHQQMYDAGMYQSHAL
YGQTGQGVMSPEPIYGPGTPSRNKPRPSQPPPAPPSNGSGGGTPTASNAN
TPTRGRSMSTSRDALPPPPPVPDVISPMSGMNGVNSGHMAAKLLGRANSS
SGAGSPNSVQNANDMVMTQLSNTFHSIGMTGNQLNSLSDLPPPPPVPDQH
SPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQILPKSLANGEMQQP
GQQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEIERN
AAPLDVASILARRVAIELSESEDSDSEDDSEGWMEPNETSA*

FI18307.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15838-PA 648 GF15838-PA 1..648 1..641 2621 89.4 Plus
Dana\GF23228-PA 2210 GF23228-PA 146..259 27..136 172 31.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23688-PA 617 GG23688-PA 1..617 1..641 3129 93.3 Plus
Dere\GG23102-PA 1787 GG23102-PA 138..251 27..136 172 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10763-PA 692 GH10763-PA 1..692 1..641 2216 73.5 Plus
Dgri\GH17981-PA 1780 GH17981-PA 153..262 27..132 163 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-PB 641 CG4636-PB 1..641 1..641 3385 100 Plus
SCAR-PF 647 CG4636-PF 1..647 1..641 3368 99.1 Plus
SCAR-PD 674 CG4636-PD 1..674 1..641 3341 95.1 Plus
SCAR-PC 640 CG4636-PC 1..640 1..641 3223 95.8 Plus
SCAR-PE 632 CG4636-PE 1..613 1..641 3201 95.5 Plus
SCAR-PA 613 CG4636-PA 1..613 1..641 3201 95.5 Plus
gukh-PB 534 CG31043-PB 138..251 27..136 170 33.3 Plus
gukh-PC 1044 CG31043-PC 138..251 27..136 170 33.3 Plus
gukh-PE 1764 CG31043-PE 138..251 27..136 170 33.3 Plus
gukh-PA 1788 CG31043-PA 138..251 27..136 170 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20586-PA 622 GI20586-PA 1..622 1..641 2241 78.5 Plus
Dmoj\GI10550-PA 1831 GI10550-PA 149..258 27..132 172 34.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19132-PA 615 GL19132-PA 1..615 1..641 2441 83 Plus
Dper\GL23446-PA 1240 GL23446-PA 151..264 27..136 177 32.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18320-PA 615 GA18320-PA 1..615 1..641 2441 83 Plus
Dpse\GA15962-PE 2087 GA15962-PE 148..261 27..136 177 32.5 Plus
Dpse\GA15962-PB 1895 GA15962-PB 148..261 27..136 177 32.5 Plus
Dpse\GA15962-PC 1114 GA15962-PC 148..261 27..136 176 32.5 Plus
Dpse\GA15962-PD 616 GA15962-PD 148..261 27..136 174 32.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18775-PA 596 GM18775-PA 1..596 1..641 2651 89.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23746-PA 332 GD23746-PA 1..332 314..641 1687 98.2 Plus
Dsim\GD23745-PA 260 GD23745-PA 1..259 1..287 1348 89.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13927-PA 620 GJ13927-PA 1..620 1..641 2210 78.7 Plus
Dvir\GJ22906-PA 1832 GJ22906-PA 153..262 27..132 180 34.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14890-PA 629 GK14890-PA 1..629 1..641 2201 78.4 Plus
Dwil\GK11025-PA 1859 GK11025-PA 160..269 27..132 175 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18500-PA 616 GE18500-PA 1..616 1..641 3138 93.3 Plus
Dyak\GE25573-PA 1789 GE25573-PA 140..253 27..136 177 32.5 Plus