Clone FI18309 Report

Search the DGRC for FI18309

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:183
Well:9
Vector:pOT2
Associated Gene/TranscriptUbpy-RB
Protein status:FI18309.pep: gold
Sequenced Size:1570

Clone Sequence Records

FI18309.complete Sequence

1570 bp assembled on 2012-01-11

GenBank Submission: BT133006.1

> FI18309.complete
CTCAAAGCATGTTCAAACCAAAGAAACGTACAATTGCCATACTGTTAAGC
AGGAATAGCATTATACAGGATTCCGCGAATGATTTGTGTAGCGGGCGTGA
GGCTCCAGCTGCCAACAGCTCCGCCCACCTACAGCATTTATAGCTCCATC
TTTCCGCTGAGACGAGGTCGTGGACTGACTGGACTGAAGAATCTGGGCAA
CACCTGCTATATGAACAGCATACTGCAGTGCCTGAGCAACACGCCTCAGT
TGACCGAGTACTGCATTTCGGACAAATACAAGAATTACATCAGCAGAAGC
AACAAGACTAATGGCCAGGTGATCGAAGAGGTGGCTGCACTCATCAAGGA
GCTCTGGAATGGACAGTACAAGTGTGTGGCCAGCCGAGATTTGAGGTACG
TTGTGGGCCAGTACCAGAAGATCTTCCGCGGCGTTGACCAGCAGGACTCA
CACGAATTCCTCACCATCCTGATGGACTGGCTGCACTCGGATCTCCAGAC
CCTACATGTGCCCCGTCAGCGGGAGATGATCAGTGCGTCGGAAAAGGCTT
GGCTGGAATTTACCAAGGCGAAGGAGAGCATGATTCTGCATTTATTCTAT
GGCCAAATGAAGAGCACTGTGAAATGTGTGGCCTGCCACAAGGAGTCCGC
CACGTACGAGAGTTTTTCTAATCTCAGCCTGGAGCTGCCGCCAAACTCGA
ATGTATGTCAGCTGAACCAGTGCATGGACATGTACTTCAGTGGAGAAAGG
ATCCATGGCTGGAATTGTCCTAGTTGTAAAACGAAAAGAGATGCCATCAA
GAAGCTGGATATATCGAAGCTGCCACCTGTGCTGGTGGTGCATCTTAAGC
GCTTCTATGCGGATCCCAGTAACTCTGGCTCGTACATGAAGAAGCAGAAC
TACTTGCGCTTCCCGCTCGAGAACTTGGACATGAATCCCTACATAGCACG
GGCGGAATCGCGGGCGGTAACACCTAAGACCTACCAGCTGTACGCCGTAT
CCAATCACTACGGCACCATGGAAGGCGGGCACTACACGGCATTTTGCAAG
AGCGCCAACTACGGAAAATGGTTCAAGTTCGACGATCAGGTCGTCTCGGC
GTTGGACTCCTCTAACGTGGTTTCTAGCGCTGCATACATTCTTTTCTACA
CCTGGCTGCCACCCATGCAGGTGCCTCTGTAGACGCTTCGCTCGGTTTCC
TTTCGGTTTTTACCCCTTTCGTTTTAATTGTTTTTTGTTTTTCTCTCATA
TTATAGCTTTTAAGGTCTAGTCGCCACACCCTTTTATCATTTACAAATTA
CCGCTTAACTGTTAACTGCTATTTAAGAGGATAATCGCTTGTTTGTTGTT
GTCTAGGCTCTTAGAACAGTATTACGCGTGGGCGTATTTTCAATGGGTGC
AGGCTGCATTCACTAAAACCAAGAACTTCAAGTGCATTACCAGTGTAACA
AAGAGAAGCCCGCATATACGCCTGTGTATGCGGGACTATAGTTTATTGTA
TTTTGCAAATATATTTTAAAACCAAATAAACGAAATTCAATTTTTGAAAA
AAAAAAAAAAAAAAAAAAAA

FI18309.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16961376..16962068 851..1543 3360 99 Plus
chr3R 27901430 chr3R 16960864..16961320 396..851 2160 98.7 Plus
chr3R 27901430 chr3R 16960575..16960805 166..396 1155 100 Plus
chr3R 27901430 chr3R 16960342..16960507 1..166 830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21137519..21138215 851..1547 3470 99.9 Plus
3R 32079331 3R 21137008..21137463 396..851 2280 100 Plus
3R 32079331 3R 21136715..21136945 166..396 1155 100 Plus
3R 32079331 3R 21136482..21136647 1..166 830 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:21:46 has no hits.

FI18309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:22:23 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16960342..16960506 1..165 100 -> Plus
chr3R 16960575..16960805 166..396 100 -> Plus
chr3R 16960865..16961320 397..851 98 -> Plus
chr3R 16961377..16962071 852..1546 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-11 14:54:37 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
Ubpy-RB 1..1104 79..1182 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:57:18 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
Ubpy-RB 1..1104 79..1182 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 19:56:54 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
Ubpy-RB 1..1104 79..1182 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 14:54:36 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
Ubpy-RB 1..1546 1..1546 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:57:18 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
Ubpy-RB 1..1546 1..1546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 19:56:54 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
Ubpy-RB 1..1546 1..1546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:22:23 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21136482..21136646 1..165 100 -> Plus
3R 21136715..21136945 166..396 100 -> Plus
3R 21137009..21137463 397..851 100 -> Plus
3R 21137520..21138214 852..1546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:22:23 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21136482..21136646 1..165 100 -> Plus
3R 21136715..21136945 166..396 100 -> Plus
3R 21137009..21137463 397..851 100 -> Plus
3R 21137520..21138214 852..1546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:22:23 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21136482..21136646 1..165 100 -> Plus
3R 21136715..21136945 166..396 100 -> Plus
3R 21137009..21137463 397..851 100 -> Plus
3R 21137520..21138214 852..1546 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:57:18 Download gff for FI18309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16962204..16962368 1..165 100 -> Plus
arm_3R 16962437..16962667 166..396 100 -> Plus
arm_3R 16962731..16963185 397..851 100 -> Plus
arm_3R 16963242..16963936 852..1546 99   Plus

FI18309.hyp Sequence

Translation from 78 to 1181

> FI18309.hyp
MICVAGVRLQLPTAPPTYSIYSSIFPLRRGRGLTGLKNLGNTCYMNSILQ
CLSNTPQLTEYCISDKYKNYISRSNKTNGQVIEEVAALIKELWNGQYKCV
ASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVPRQREM
ISASEKAWLEFTKAKESMILHLFYGQMKSTVKCVACHKESATYESFSNLS
LELPPNSNVCQLNQCMDMYFSGERIHGWNCPSCKTKRDAIKKLDISKLPP
VLVVHLKRFYADPSNSGSYMKKQNYLRFPLENLDMNPYIARAESRAVTPK
TYQLYAVSNHYGTMEGGHYTAFCKSANYGKWFKFDDQVVSALDSSNVVSS
AAYILFYTWLPPMQVPL*

FI18309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ubpy-PB 367 CG5798-PB 1..367 1..367 1962 100 Plus
Ubpy-PA 896 CG5798-PA 550..896 21..367 1814 97.7 Plus
CG14619-PH 565 CG14619-PH 235..562 29..357 574 37 Plus
CG14619-PA 856 CG14619-PA 526..853 29..357 574 37 Plus
CG14619-PB 337 CG14619-PB 11..334 33..357 566 37.1 Plus

FI18309.pep Sequence

Translation from 78 to 1181

> FI18309.pep
MICVAGVRLQLPTAPPTYSIYSSIFPLRRGRGLTGLKNLGNTCYMNSILQ
CLSNTPQLTEYCISDKYKNYISRSNKTNGQVIEEVAALIKELWNGQYKCV
ASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVPRQREM
ISASEKAWLEFTKAKESMILHLFYGQMKSTVKCVACHKESATYESFSNLS
LELPPNSNVCQLNQCMDMYFSGERIHGWNCPSCKTKRDAIKKLDISKLPP
VLVVHLKRFYADPSNSGSYMKKQNYLRFPLENLDMNPYIARAESRAVTPK
TYQLYAVSNHYGTMEGGHYTAFCKSANYGKWFKFDDQVVSALDSSNVVSS
AAYILFYTWLPPMQVPL*

FI18309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23156-PA 899 GF23156-PA 545..899 13..367 1774 89.6 Plus
Dana\GF21001-PA 1296 GF21001-PA 966..1293 29..357 558 37 Plus
Dana\GF10813-PA 668 GF10813-PA 328..660 32..357 390 30.6 Plus
Dana\GF23599-PA 1748 GF23599-PA 738..920 32..204 315 40.2 Plus
Dana\GF23992-PA 1091 GF23992-PA 176..488 34..365 313 28.5 Plus
Dana\GF23599-PA 1748 GF23599-PA 1463..1539 212..290 179 43.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24410-PA 895 GG24410-PA 549..895 21..367 1860 97.1 Plus
Dere\GG19743-PA 1414 GG19743-PA 1084..1411 29..357 580 37.7 Plus
Dere\GG15734-PA 496 GG15734-PA 156..488 32..357 388 30.1 Plus
Dere\GG16065-PA 1760 GG16065-PA 737..919 32..204 321 40 Plus
Dere\GG15285-PA 1085 GG15285-PA 173..478 34..357 317 29.5 Plus
Dere\GG16065-PA 1760 GG16065-PA 1471..1547 212..290 178 43.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18183-PA 901 GH18183-PA 561..900 21..367 1650 84.7 Plus
Dgri\GH17708-PA 847 GH17708-PA 519..844 32..357 548 37.2 Plus
Dgri\GH18640-PA 717 GH18640-PA 366..709 32..357 393 30.2 Plus
Dgri\GH16215-PA 1240 GH16215-PA 202..509 34..357 327 31 Plus
Dgri\GH17697-PA 1065 GH17697-PA 35..217 32..204 313 38.9 Plus
Dgri\GH17697-PA 1065 GH17697-PA 774..850 212..290 180 43.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Usp8-PB 367 CG5798-PB 1..367 1..367 1962 100 Plus
Usp8-PA 896 CG5798-PA 550..896 21..367 1814 97.7 Plus
Usp2-PH 565 CG14619-PH 235..562 29..357 574 37 Plus
Usp2-PA 856 CG14619-PA 526..853 29..357 574 37 Plus
Usp2-PD 856 CG14619-PD 526..853 29..357 574 37 Plus
Usp2-PE 856 CG14619-PE 526..853 29..357 574 37 Plus
Usp2-PG 938 CG14619-PG 608..935 29..357 574 37 Plus
Usp2-PF 938 CG14619-PF 608..935 29..357 574 37 Plus
Usp2-PC 938 CG14619-PC 608..935 29..357 574 37 Plus
Usp2-PI 950 CG14619-PI 620..947 29..357 574 37 Plus
Usp2-PK 315 CG14619-PK 1..312 45..357 514 36 Plus
not-PC 496 CG4166-PC 156..488 32..357 408 30.6 Plus
not-PB 496 CG4166-PB 156..488 32..357 408 30.6 Plus
Usp32-PD 1693 CG8334-PD 675..857 32..204 318 39.3 Plus
Usp32-PC 1696 CG8334-PC 675..857 32..204 318 39.3 Plus
Usp32-PE 1712 CG8334-PE 675..857 32..204 318 39.3 Plus
Usp32-PB 1715 CG8334-PB 675..857 32..204 318 39.3 Plus
scny-PI 886 CG5505-PI 82..387 34..357 316 28.6 Plus
scny-PJ 906 CG5505-PJ 102..407 34..357 316 28.6 Plus
scny-PC 948 CG5505-PC 82..387 34..357 316 28.6 Plus
scny-PB 968 CG5505-PB 102..407 34..357 316 28.6 Plus
scny-PH 976 CG5505-PH 172..477 34..357 316 28.6 Plus
scny-PG 976 CG5505-PG 172..477 34..357 316 28.6 Plus
scny-PD 1038 CG5505-PD 172..477 34..357 316 28.6 Plus
Usp20-33-PA 975 CG8494-PA 282..538 139..357 305 32.1 Plus
Usp15-31-PC 1244 CG30421-PC 228..422 25..204 295 35 Plus
Usp15-31-PB 1244 CG30421-PB 228..422 25..204 295 35 Plus
Usp15-31-PA 1272 CG30421-PA 256..450 25..204 295 35 Plus
Usp7-PC 1125 CG1490-PC 235..513 28..341 282 31.1 Plus
Usp7-PB 1129 CG1490-PB 235..513 28..341 282 31.1 Plus
Usp15-31-PC 1244 CG30421-PC 623..889 121..357 261 28.1 Plus
Usp15-31-PB 1244 CG30421-PB 623..889 121..357 261 28.1 Plus
Usp15-31-PA 1272 CG30421-PA 651..917 121..357 261 28.1 Plus
Usp30-PB 558 CG3016-PB 323..547 167..357 208 27.2 Plus
Usp30-PA 558 CG3016-PA 323..547 167..357 208 27.2 Plus
Usp12-46-PB 424 CG7023-PB 219..418 164..357 199 28.2 Plus
faf-PC 2711 CG1945-PC 1662..2012 28..340 197 24 Plus
faf-PI 2761 CG1945-PI 1662..2012 28..340 197 24 Plus
faf-PE 2761 CG1945-PE 1662..2012 28..340 197 24 Plus
faf-PH 2773 CG1945-PH 1662..2012 28..340 197 24 Plus
faf-PG 2773 CG1945-PG 1662..2012 28..340 197 24 Plus
faf-PD 2773 CG1945-PD 1662..2012 28..340 197 24 Plus
faf-PA 2778 CG1945-PA 1662..2012 28..340 197 24 Plus
Usp47-PD 1538 CG5486-PD 375..612 31..292 191 27.6 Plus
Usp47-PB 1556 CG5486-PB 393..630 31..292 191 27.6 Plus
Usp47-PA 1556 CG5486-PA 393..630 31..292 191 27.6 Plus
Usp20-33-PA 975 CG8494-PA 76..192 30..139 190 37.6 Plus
DUBAI-PA 852 CG8830-PA 539..738 167..357 185 30.2 Plus
DUBAI-PB 852 CG8830-PB 539..738 167..357 185 30.2 Plus
Usp39-PA 494 CG7288-PA 157..491 32..361 180 22 Plus
Usp32-PD 1693 CG8334-PD 1404..1487 212..297 178 40.2 Plus
Usp32-PC 1696 CG8334-PC 1407..1490 212..297 178 40.2 Plus
Usp32-PE 1712 CG8334-PE 1423..1506 212..297 178 40.2 Plus
Usp32-PB 1715 CG8334-PB 1426..1509 212..297 178 40.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10137-PA 908 GI10137-PA 553..907 13..367 1707 85.9 Plus
Dmoj\GI15450-PA 1158 GI15450-PA 830..1155 32..357 549 37.3 Plus
Dmoj\GI11709-PA 710 GI11709-PA 369..702 32..357 395 29.9 Plus
Dmoj\GI13361-PA 1185 GI13361-PA 200..506 35..357 314 30.2 Plus
Dmoj\GI11648-PA 1765 GI11648-PA 734..916 32..204 314 39.5 Plus
Dmoj\GI11648-PA 1765 GI11648-PA 1475..1551 212..290 179 43.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12603-PA 901 GL12603-PA 529..891 8..362 1663 83.5 Plus
Dper\GL13296-PA 820 GL13296-PA 490..817 29..357 575 38.3 Plus
Dper\GL16307-PA 530 GL16307-PA 172..487 34..367 321 29.2 Plus
Dper\GL16769-PA 1292 GL16769-PA 249..443 25..204 296 35 Plus
Dper\GL20263-PA 1133 GL20263-PA 238..516 28..341 296 31.1 Plus
Dper\GL16769-PA 1292 GL16769-PA 647..911 121..357 255 28.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19137-PA 901 GA19137-PA 550..891 21..362 1664 87.1 Plus
Dpse\GA19137-PB 328 GA19137-PB 1..318 45..362 1554 88.7 Plus
Dpse\GA13118-PA 872 GA13118-PA 542..869 29..357 578 38.3 Plus
Dpse\GA18001-PA 494 GA18001-PA 156..486 32..357 385 29.9 Plus
Dpse\GA20997-PA 1775 GA20997-PA 737..919 32..204 313 38.9 Plus
Dpse\GA20997-PA 1775 GA20997-PA 1469..1545 212..290 173 43.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15069-PA 896 GM15069-PA 550..896 21..367 1870 97.4 Plus
Dsec\GM11729-PA 1022 GM11729-PA 692..1019 29..357 576 37 Plus
Dsec\GM19676-PA 1760 GM19676-PA 739..921 32..204 322 40 Plus
Dsec\GM21521-PA 979 GM21521-PA 282..538 139..357 307 32.8 Plus
Dsec\GM13227-PA 1129 GM13227-PA 235..513 28..341 294 31.1 Plus
Dsec\GM21521-PA 979 GM21521-PA 76..192 30..139 187 36.8 Plus
Dsec\GM19676-PA 1760 GM19676-PA 1471..1547 212..290 178 43.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19401-PA 896 GD19401-PA 550..896 21..367 1869 97.4 Plus
Dsim\GD17542-PA 398 GD17542-PA 68..395 29..357 577 37.7 Plus
Dsim\GD12336-PA 496 GD12336-PA 156..488 32..357 390 30.1 Plus
Dsim\GD14834-PA 1760 GD14834-PA 739..921 32..204 321 40.8 Plus
Dsim\GD13899-PA 988 GD13899-PA 78..383 34..357 316 28.9 Plus
Dsim\GD14834-PA 1760 GD14834-PA 1471..1547 212..290 178 43.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23355-PA 906 GJ23355-PA 551..905 13..367 1679 84.5 Plus
Dvir\GJ19166-PA 938 GJ19166-PA 610..935 32..357 551 37 Plus
Dvir\GJ11383-PA 704 GJ11383-PA 362..696 32..357 392 30.1 Plus
Dvir\GJ13192-PA 1214 GJ13192-PA 193..499 35..357 317 30.8 Plus
Dvir\GJ11329-PA 1765 GJ11329-PA 733..915 32..204 312 39.5 Plus
Dvir\GJ11329-PA 1765 GJ11329-PA 1469..1545 212..290 179 43.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12180-PA 925 GK12180-PA 573..922 16..365 1664 85.4 Plus
Dwil\GK16418-PA 1396 GK16418-PA 1054..1393 20..357 548 35.8 Plus
Dwil\GK14576-PA 318 GK14576-PA 1..314 45..357 503 36.8 Plus
Dwil\GK20778-PA 917 GK20778-PA 72..508 30..357 362 27.4 Plus
Dwil\GK19705-PA 1771 GK19705-PA 739..921 32..204 311 39.7 Plus
Dwil\GK19705-PA 1771 GK19705-PA 1479..1555 212..290 177 43.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25711-PA 895 GE25711-PA 549..895 21..367 1854 96.3 Plus
Dyak\GE17938-PA 1409 GE17938-PA 1079..1406 29..357 567 37 Plus
Dyak\GE22066-PA 679 GE22066-PA 339..671 32..357 387 30.1 Plus
Dyak\GE21508-PA 1082 GE21508-PA 173..478 34..357 323 29.8 Plus
Dyak\GE19632-PA 1758 GE19632-PA 739..921 32..204 322 40 Plus
Dyak\GE19632-PA 1758 GE19632-PA 1469..1545 212..290 178 43.8 Plus