Clone FI18403 Report

Search the DGRC for FI18403

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:184
Well:3
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptNop60B-RA
Protein status:FI18403.pep: gold
Sequenced Size:1783

Clone Sequence Records

FI18403.complete Sequence

1783 bp assembled on 2012-02-08

GenBank Submission: BT133195.1

> FI18403.complete
GTCCATTTTCTCGCAGCGCGCAACACGTGCGGAGGTTTCTCTCCGTCTAT
TAGTTGATTTAGCAGAAAACGTAGATAAAATGGCCGACGTGGAAGTACGC
AAGGAGAAGAAAAAGAAGAAGATCAAGGAGGAGCCCTTGGACGGCGATGA
CATTGGCACGCTGCAGAAGCAGGGCAACTTCCAAATCAAGCCCTCCTCCA
AGATCGCCGAGCTGGACACCTCGCAATGGCCGCTGCTCCTGAAGAACTTC
GACAAGTTGAACATCCGTTCCAACCACTACACTCCGCTGGCGCACGGATC
GTCGCCCCTGAACCGCGACATCAAAGAGTACATGAAGACTGGCTTCATCA
ACCTGGACAAGCCGTCGAACCCCAGCTCCCACGAGGTGGTGGCCTGGATC
AAGAAAATCCTCAAGGTGGAGAAGACAGGCCACTCCGGCACGCTGGATCC
CAAAGTCACGGGTTGCCTGATTGTTTGTATTGACAGGGCCACCCGTCTGG
TGAAGTCCCAGCAGAGCGCCGGCAAGGAGTACGTGGCCATCTTCAAGCTG
CACGGAGCCGTGGAGTCGGTGGCCAAGGTGCGTCAGGGCCTGGAGAAGCT
GCGTGGTGCCCTCTTCCAGAGACCTCCACTCATCTCCGCCGTAAAGCGTC
AGTTGCGCGTTCGTACTGTCTACGACAGCAAGCTGTTGGACTACGATGAA
ACCCGAAATATGGGTGTTTTTTGGGTTAGTTGCGAGGCCGGCTCCTACAT
CCGTACCATGTGCGTCCATCTTGGTCTCGTACTGGGTGTCGGTGGCCAGA
TGCTGGAGCTCCGCCGTGTCCGCTCGGGCATTCAGTCTGAGCGCGATGGT
ATGGTGACCATGCACGATGTTTTGGACGCCATGTGGCTGTACGAAAACCA
CAAGGACGAGTCTATGCTGCGACGTGTGATCAAGCCGCTAGAAGGTCTGC
TGGTCAACCACAAGCGCATTATTATGAAGGACAGTTCGGTCAACGCCGTT
TGCTATGGTGCCAAGATTACATTGCCCGGTGTCCTGCGCTACGAGGATGG
CATTGAAATCGATCAGGAGATCGTCATTTGCACCACCAAGGGTGAGGCCA
TTTGCCTGGCCATCGCCCTCATGACCACAGCCACTATGGCCTCTTGTGAC
CATGGTGTGGTGGCCAAGATCAAGCGAGTGATCATGGAGCGAGACACATA
CCCGCGCAAGTGGGGATTGGGACCAAAGGCGTCGGCCAAGAAGGCGCTCA
TTGCCGCCGGCAAGCTAGACAAGTTCGGAAGGCCCAATGAAAACACACCT
AAGGAGTGGCTGACCGGTTATGTCGACTACAATGCCAAGAAGCCAGCAGC
TCAAGAAGTCTCCCCCACAAATGGCTCCAGTGAACCCAGCAAACGCAAGT
TAAGCACCTCCAGCGTTGAGGAAACTGCTGCGGCGGCGGTATCCGAGGAG
ACTCCTTCCAAGGACAAAAAGAAGAAGAAAAAGAAGCACAAGGGCGACGA
GGAAGCCCCAGAAGCCGCTGAGGAGGAGGCAGAGCCAGTAGAAAAGGAGA
AGAAAAAGAAGAAGAAGAAGGACAAGGATAGGGACAGAGACGAAGCTCAG
GAATAGGAATCAGAAGTTTCTATAGGATTAGGTTTTAAAGAGAATTCTAC
GCTTTTTGTAGAGGCACCTACCGATTGCTAGCTGTTAGGTTTAAGGAGTG
TTTTTATGTGTAGAAGTGCATACAAATTACAAATGCATTTAAGTGACATT
CACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI18403.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20062443..20062848 988..1393 2030 100 Plus
chr2R 21145070 chr2R 20061043..20061414 92..463 1830 99.5 Plus
chr2R 21145070 chr2R 20062910..20063268 1394..1751 1685 98.6 Plus
chr2R 21145070 chr2R 20061933..20062210 713..990 1375 99.6 Plus
chr2R 21145070 chr2R 20061489..20061743 461..715 1275 100 Plus
chr2R 21145070 chr2R 20060892..20060983 1..92 460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24176426..24176831 988..1393 2030 100 Plus
2R 25286936 2R 24175027..24175398 92..463 1860 100 Plus
2R 25286936 2R 24176893..24177255 1394..1755 1750 99.4 Plus
2R 25286936 2R 24175916..24176193 713..990 1390 100 Plus
2R 25286936 2R 24175472..24175726 461..715 1275 100 Plus
2R 25286936 2R 24174876..24174967 1..92 460 100 Plus
Blast to na_te.dros performed 2019-03-15 13:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 869..953 1463..1545 168 69.8 Plus

FI18403.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:05:47 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20060892..20060983 1..92 100 -> Plus
chr2R 20061044..20061412 93..461 99 -> Plus
chr2R 20061490..20061741 462..713 100 -> Plus
chr2R 20061934..20062208 714..988 99 -> Plus
chr2R 20062444..20062848 989..1393 100 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-08 10:09:08 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
Nop60B-RC 1..1527 80..1606 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:07:32 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
Nop60B-RB 1..1527 80..1606 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:21:13 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
Nop60B-RB 1..1527 80..1606 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:09:08 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
Nop60B-RC 152..1905 1..1753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:07:32 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
Nop60B-RB 1..1753 2..1753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:21:13 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
Nop60B-RB 1..1753 2..1753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:47 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24174876..24174967 1..92 100 -> Plus
2R 24175028..24175396 93..461 100 -> Plus
2R 24175473..24175724 462..713 100 -> Plus
2R 24175917..24176191 714..988 100 -> Plus
2R 24176427..24176831 989..1393 100 -> Plus
2R 24176893..24177253 1394..1753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:47 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24174876..24174967 1..92 100 -> Plus
2R 24175028..24175396 93..461 100 -> Plus
2R 24175473..24175724 462..713 100 -> Plus
2R 24175917..24176191 714..988 100 -> Plus
2R 24176427..24176831 989..1393 100 -> Plus
2R 24176893..24177253 1394..1753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:47 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24174876..24174967 1..92 100 -> Plus
2R 24175028..24175396 93..461 100 -> Plus
2R 24175473..24175724 462..713 100 -> Plus
2R 24175917..24176191 714..988 100 -> Plus
2R 24176427..24176831 989..1393 100 -> Plus
2R 24176893..24177253 1394..1753 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:07:32 Download gff for FI18403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20062996..20063247 462..713 100 -> Plus
arm_2R 20062399..20062490 1..92 100 -> Plus
arm_2R 20062551..20062919 93..461 100 -> Plus
arm_2R 20063440..20063714 714..988 100 -> Plus
arm_2R 20063950..20064354 989..1393 100 -> Plus
arm_2R 20064416..20064776 1394..1753 99   Plus

FI18403.hyp Sequence

Translation from 0 to 1605

> FI18403.hyp
SIFSQRATRAEVSLRLLVDLAENVDKMADVEVRKEKKKKKIKEEPLDGDD
IGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGS
SPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDP
KVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKL
RGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETRNMGVFWVSCEAGSYI
RTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYENH
KDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLRYEDG
IEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTY
PRKWGLGPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKPAA
QEVSPTNGSSEPSKRKLSTSSVEETAAAAVSEETPSKDKKKKKKKHKGDE
EAPEAAEEEAEPVEKEKKKKKKKDKDRDRDEAQE*

FI18403.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Nop60B-PF 508 CG3333-PF 1..508 27..534 2616 100 Plus
Nop60B-PC 508 CG3333-PC 1..508 27..534 2616 100 Plus
Nop60B-PB 508 CG3333-PB 1..508 27..534 2616 100 Plus
Nop60B-PA 508 CG3333-PA 1..508 27..534 2616 100 Plus
Nop60B-PG 227 CG3333-PG 1..218 27..244 1083 97.2 Plus

FI18403.pep Sequence

Translation from 1 to 1605

> FI18403.pep
SIFSQRATRAEVSLRLLVDLAENVDKMADVEVRKEKKKKKIKEEPLDGDD
IGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGS
SPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDP
KVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKL
RGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETRNMGVFWVSCEAGSYI
RTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYENH
KDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLRYEDG
IEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTY
PRKWGLGPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKPAA
QEVSPTNGSSEPSKRKLSTSSVEETAAAAVSEETPSKDKKKKKKKHKGDE
EAPEAAEEEAEPVEKEKKKKKKKDKDRDRDEAQE*

FI18403.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11381-PA 515 GF11381-PA 1..515 27..534 2535 94 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22950-PA 508 GG22950-PA 1..508 27..534 2687 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20974-PA 509 GH20974-PA 1..449 27..476 2248 94 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Nop60B-PF 508 CG3333-PF 1..508 27..534 2616 100 Plus
Nop60B-PC 508 CG3333-PC 1..508 27..534 2616 100 Plus
Nop60B-PB 508 CG3333-PB 1..508 27..534 2616 100 Plus
Nop60B-PA 508 CG3333-PA 1..508 27..534 2616 100 Plus
Nop60B-PG 227 CG3333-PG 1..218 27..244 1083 97.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21310-PA 507 GI21310-PA 1..460 27..484 2180 90.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19980-PA 519 GL19980-PA 1..465 27..484 2214 92.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24087-PA 519 GA24087-PA 1..465 27..484 2214 92.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18314-PA 502 GM18314-PA 1..502 27..534 2636 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11839-PA 508 GD11839-PA 1..508 27..534 2687 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21579-PA 508 GJ21579-PA 1..453 27..477 2207 93 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15777-PA 1467 GK15777-PA 963..1419 31..486 2178 92.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14387-PA 508 GE14387-PA 1..508 27..534 2676 98.6 Plus