Clone FI18406 Report

Search the DGRC for FI18406

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:184
Well:6
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptStim-RD
Protein status:FI18406.pep: gold
Sequenced Size:2136

Clone Sequence Records

FI18406.complete Sequence

2136 bp assembled on 2012-01-18

GenBank Submission: BT133089.1

> FI18406.complete
TTCAACCCAAACTGACTCGGGAATTTTAGGGATATCATCAGTTGAAAACT
ATGACTTTCGCGAGCAACAAATTTGATTTGTAAACTTATAAGAAACCGAG
CCGATTTACCGATTTAAAGGAGACATATGCGATAATTTGTATTGAAGAAG
TCCGCACACAATTCGTAACAATGCGAAAGAATACCATTTGGAACTACTCT
TTAATATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGG
CCCGCACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGT
ATAAGCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCT
GGTCAGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGC
ATCGCACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATC
TGCACAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTC
AGCAATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGC
TGCTGATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCA
TGGAGGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGA
AACATCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTA
CGACTCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATA
TGCATATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTG
CATAATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCA
GCTGCCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTG
CCTTGCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTT
GGCATCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGA
TGTGGTTCTGTTTGGGCCACCGCGAGAAACTGGTACCCGCTGGAAAGACT
ACATATTGGTAACACTGTTGCTTAGTGCTATTATTGGTTGTTGGTACGCC
TATCAGCAAAATAAGAATGCCAAACGGCATCTGCGTCGAATGGCCCAGGA
TATGGAGGGATTGCAGAGGGCTGAGCAAAGTCTACAGGAGATGCAGAAGG
AACTAGAACGGGCCAGAATGGAGCAGGAAAATGTGGCAACAGAAAAACTA
GATTTGGAGCGTCGTCTAAAAGAAGCGCCCACTCTCAGTTCATCGAACTC
GGATTTGGAAGTTCAGCAGCTGAAAAAGGAAATCGAGATGTTGCGCAACG
AATTGTCCCGCGCCGAATTCGAGCTAGTAGACAACTGCTGGTCACCGCCG
CCACAACTGCAATCATGGCTTCAATACACATATGAACTAGAAAGTAAGAA
TCATCAGAAGAAGCGCACGTCGGCTGAGAAGCAGCTACAGTCGGCCAGAG
AGGCTTGTGAGAAATTGCGTAAGAAACGGTCAAGTTTGGTGGGTGCGTTC
GTTTCCACGCACGGAAAGAGTATTGATGATGTGGATCGGTCGATTGTTGA
GGCACGGAATGCCCTCGGAGATGTAACAAACGAGCTGCAAGAACGACTGC
ATCGCTGGAAGCAAATCGAGACGTGCCTTGGCTTAAACATTGTGAACAAC
AATGGTCTGCCCTACTTGGAGAATGTTCTGTACGGTCGAAATGGGGGCTT
ACAAAGTTCCATGGGCATGAGTTCAACCAAGGGTTCTAGAGCACGTATTA
CCAACAGCACCGAAGACCTGGACGATGAGTCCATACAAGGTTTTGGAATT
CCATAACGGACAAAGAATGGCACACTATACTGGTCCTACGAGCCGACTTA
ACTTCGATCCTCGCCCTTTTTATTTATATTCCGATTAACAAAGCTTATGC
CTTGGCATGAGTTTTTAATTGGCACAGCTGATCACAGATGCGTATGGATG
ACTGAAGAACCTCTTGGCGACCAGCAGTATGTTCACCTCACCCGATCCAT
ATTCCGTAGAAAAACATTACTAAATTATTATTGATTTGATTCGAATAAAC
TTTTAGACTTTACCCCCAAAAAAAAAAAAAAAAAAA

FI18406.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15825263..15825856 1791..1198 2970 100 Minus
chrX 22417052 chrX 15828602..15829087 515..30 2415 99.8 Minus
chrX 22417052 chrX 15824341..15824622 2117..1838 1345 99.3 Minus
chrX 22417052 chrX 15826638..15826877 917..678 1170 99.2 Minus
chrX 22417052 chrX 15825921..15826096 1200..1025 865 99.4 Minus
chrX 22417052 chrX 15827437..15827600 677..514 820 100 Minus
chrX 22417052 chrX 15826165..15826282 1026..909 590 100 Minus
chrX 22417052 chrX 15825139..15825190 1841..1790 260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15935417..15936010 1791..1198 2970 100 Minus
X 23542271 X 15938756..15939241 515..30 2430 100 Minus
X 23542271 X 15934493..15934776 2119..1838 1355 99.3 Minus
X 23542271 X 15936792..15937031 917..678 1170 99.2 Minus
X 23542271 X 15936075..15936250 1200..1025 880 100 Minus
X 23542271 X 15937591..15937754 677..514 820 100 Minus
X 23542271 X 15936319..15936436 1026..909 590 100 Minus
X 23542271 X 15935293..15935344 1841..1790 260 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:45:16 has no hits.

FI18406.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:46:08 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15824341..15824620 1840..2117 99 <- Minus
chrX 15825141..15825188 1792..1839 100 <- Minus
chrX 15830246..15830275 1..30 100   Minus
chrX 15825263..15825854 1200..1791 100 <- Minus
chrX 15825922..15826094 1027..1199 99 <- Minus
chrX 15826165..15826280 911..1026 100 <- Minus
chrX 15826645..15826877 678..910 100 <- Minus
chrX 15827437..15827600 514..677 100 <- Minus
chrX 15828604..15829086 31..513 99 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-18 14:30:09 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RD 1..1686 171..1856 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:02:31 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RD 1..1686 171..1856 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:09:17 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RD 1..1686 171..1856 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-18 14:30:08 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RD 82..2200 1..2117 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:02:31 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RD 23..2141 1..2117 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:09:17 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RD 23..2141 1..2117 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:08 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
X 15936076..15936248 1027..1199 100 <- Minus
X 15936319..15936434 911..1026 100 <- Minus
X 15938758..15939240 31..513 100 <- Minus
X 15934495..15934774 1840..2117 99 <- Minus
X 15935295..15935342 1792..1839 100 <- Minus
X 15935417..15936008 1200..1791 100 <- Minus
X 15936799..15937031 678..910 100 <- Minus
X 15937591..15937754 514..677 100 <- Minus
X 15940400..15940429 1..30 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:08 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
X 15936076..15936248 1027..1199 100 <- Minus
X 15936319..15936434 911..1026 100 <- Minus
X 15938758..15939240 31..513 100 <- Minus
X 15934495..15934774 1840..2117 99 <- Minus
X 15935295..15935342 1792..1839 100 <- Minus
X 15935417..15936008 1200..1791 100 <- Minus
X 15936799..15937031 678..910 100 <- Minus
X 15937591..15937754 514..677 100 <- Minus
X 15940400..15940429 1..30 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:46:08 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
X 15936076..15936248 1027..1199 100 <- Minus
X 15936319..15936434 911..1026 100 <- Minus
X 15938758..15939240 31..513 100 <- Minus
X 15934495..15934774 1840..2117 99 <- Minus
X 15935295..15935342 1792..1839 100 <- Minus
X 15935417..15936008 1200..1791 100 <- Minus
X 15936799..15937031 678..910 100 <- Minus
X 15937591..15937754 514..677 100 <- Minus
X 15940400..15940429 1..30 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:31 Download gff for FI18406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15828528..15828807 1840..2117 99 <- Minus
arm_X 15829328..15829375 1792..1839 100 <- Minus
arm_X 15829450..15830041 1200..1791 100 <- Minus
arm_X 15830109..15830281 1027..1199 100 <- Minus
arm_X 15830352..15830467 911..1026 100 <- Minus
arm_X 15830832..15831064 678..910 100 <- Minus
arm_X 15831624..15831787 514..677 100 <- Minus
arm_X 15832791..15833273 31..513 100 <- Minus
arm_X 15834433..15834462 1..30 100   Minus

FI18406.pep Sequence

Translation from 170 to 1855

> FI18406.pep
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGFGIP*

FI18406.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10709-PA 465 GF10709-PA 1..429 1..468 1811 78.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19358-PA 569 GG19358-PA 1..556 1..557 2966 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12177-PA 575 GH12177-PA 1..562 1..557 2272 79.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-PD 561 CG9126-PD 1..561 1..561 2930 100 Plus
Stim-PA 570 CG9126-PA 1..557 1..557 2907 100 Plus
Stim-PF 117 CG9126-PF 1..117 1..117 617 99.1 Plus
Stim-PG 117 CG9126-PG 1..117 1..117 617 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14178-PA 571 GI14178-PA 1..558 1..557 2279 78.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16222-PA 221 GL16222-PA 1..208 350..557 1021 91.8 Plus
Dper\GL16223-PA 101 GL16223-PA 24..101 170..247 425 98.7 Plus
Dper\GL16221-PA 81 GL16221-PA 1..81 276..360 373 82.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27643-PA 221 GA27643-PA 1..208 350..557 1021 91.8 Plus
Dpse\GA27864-PA 78 GA27864-PA 1..78 170..247 426 98.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22508-PA 577 GM22508-PA 1..557 1..557 2982 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18461-PA 575 GJ18461-PA 1..562 1..557 2226 78.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16254-PA 959 GK16254-PA 4..592 5..558 2336 79.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16005-PA 569 GE16005-PA 1..556 1..557 2977 99.3 Plus

FI18406.hyp Sequence

Translation from 170 to 1855

> FI18406.hyp
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGFGIP*

FI18406.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-PD 561 CG9126-PD 1..561 1..561 2930 100 Plus
Stim-PA 570 CG9126-PA 1..557 1..557 2907 100 Plus
Stim-PF 117 CG9126-PF 1..117 1..117 617 99.1 Plus
Stim-PG 117 CG9126-PG 1..117 1..117 617 99.1 Plus