Clone FI18513 Report

Search the DGRC for FI18513

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:185
Well:13
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG4159-RB
Protein status:FI18513.pep: gold
Sequenced Size:1498

Clone Sequence Records

FI18513.complete Sequence

1498 bp assembled on 2012-01-12

GenBank Submission: BT133011.1

> FI18513.complete
GTAACAGAGCAAGAAGAAGAAGCACAACCACACGTGTGTGAATTCCTCCA
CTTTAAATCCAGAATTGTTTACTTAATGTTTTTAAGACGACTTTTAAACG
ACTACACCAAGGCAGTTCGCCTGAAAACCCTTTGCAATCCCTGGAATCGC
CACAAATCCTTCGCCGCAGCGATGTCAGAGGCTCTAGATAAACTGGAGGT
GGAGAAGGAAGCCAGGAAAGAGGCCAAAGAACTGGAGGGCGAAGCCGTGA
AGGACGCCAACCGCATCAAGAGAACACTTAAACGCAAGAAATGGGTCGAT
TGGAAGGAGCAGGACGAGAAGGATGCCGCCAACGGCGTGAAGCGAGCGCC
GTTCGATCCCGCCGACCGGATCAAGCGCAAGAAGAGCGCCATCCTGCTTA
GCTACTGCGGTGCGAACTACTATGGTATGCAGCGCAATCCCGGCATGCAG
ACCATCGAGGAGGAGCTCTTCAAAGCCATGCTAAAGCACAAGTGGATTAC
AGAGGACAGCTTTGAGCAGATTCAGATTTCCTGTTTCCAAAGAGCGGCCA
GGACCGACAAGGGCGTCTCCGCCGCCCGCCAGGTGTGCTCCGTCAAGCTG
CCTGAGGAGCTGGACCTGGAGGCCTTCAATGCCGATCTGCCGCAACAGAT
CCGTCTGTTTGGCGTAGAACGCGTGACTAAGGGCTTCAATGCCAAGGATC
AATGCAATGCTCGGACCTACACCTACACACTGCCCACCGTGGCCTTTGCT
CCGTTTGAGGAAAAGGTCGACGACGTGCACGACACCTTCCGGATTTCACC
AGAGCTGCTGCAGAAGGTTAAAGAAACCCTGAAGCTCTACGAGGGCACGA
AGAACTTCCACAACTTCACCAGCAAGAAAAGCTTTCTGGATCCTTCGTCC
AAGCGCTTCATCATGTCCTTTACGAGCAGCGAGCCATTCCGGAGTCCCCA
GGACATCGAATTTGTCACACTTAAGGTTAAGGGTCAGAGCTTTATGCTGC
ACCAGATTCGCAAGATGGTGGGTCTAGCCATTGCCATTGTAAGGGGGAAC
ACGACGGCGGCCACTTTAGAGCGGGCACTGACGGAGGAGCGTCTGGACCT
GCCGATGGCCCCTGGACTGGGCCTCGTGCTGGACACAGTGCACTACGAGC
GCTACAACGATCGCTACGGCAAGGACGGCATCCACAATCCGCTGACATGG
CAGGCGCAGGAGGCGCAAGTCCAGGAGTTTATCGAGAGGGAGATCTTTAG
CCAGATCTATAAGACGGAAGCCGAGCAGCGTAACATGCTCGACTGGATAG
GAACATTGCATTATCACTCGTACGACACGCGGACGGAGGACGCGCCTCCA
CCTTCCTCCGAAGACAAGAAGGTTAAAGGTGGTGATGACGACAATGACGA
ATAAGATAGATTTTTTTATGAACATTAACAAATAAAATCCAATCAATTTA
CACTTGTACAATAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI18513.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16414938..16415525 1466..879 2940 100 Minus
chr3R 27901430 chr3R 16415922..16416409 601..114 2440 100 Minus
chr3R 27901430 chr3R 16415590..16415866 878..602 1385 100 Minus
chr3R 27901430 chr3R 16416471..16416585 115..1 575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20591019..20591611 1471..879 2950 99.8 Minus
3R 32079331 3R 20592008..20592495 601..114 2440 100 Minus
3R 32079331 3R 20591676..20591952 878..602 1385 100 Minus
3R 32079331 3R 20592557..20592671 115..1 575 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:23:14 has no hits.

FI18513.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:24:04 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16414938..16415525 879..1466 100 <- Minus
chr3R 16415590..16415866 602..878 100 <- Minus
chr3R 16415922..16416407 116..601 100 <- Minus
chr3R 16416471..16416585 1..115 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-12 17:02:24 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
CG4159-RB 1..1329 76..1404 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:57:44 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
CG4159-RB 1..1329 76..1404 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 19:57:45 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
CG4159-RB 1..1329 76..1404 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-12 17:02:23 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
CG4159-RB 1..1466 1..1466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:57:44 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
CG4159-RB 1..1466 1..1466 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 19:57:45 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
CG4159-RB 1..1466 1..1466 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:04 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20591024..20591611 879..1466 100 <- Minus
3R 20591676..20591952 602..878 100 <- Minus
3R 20592008..20592493 116..601 100 <- Minus
3R 20592557..20592671 1..115 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:04 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20591024..20591611 879..1466 100 <- Minus
3R 20591676..20591952 602..878 100 <- Minus
3R 20592008..20592493 116..601 100 <- Minus
3R 20592557..20592671 1..115 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:04 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20591024..20591611 879..1466 100 <- Minus
3R 20591676..20591952 602..878 100 <- Minus
3R 20592008..20592493 116..601 100 <- Minus
3R 20592557..20592671 1..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:57:44 Download gff for FI18513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16416746..16417333 879..1466 100 <- Minus
arm_3R 16417398..16417674 602..878 100 <- Minus
arm_3R 16417730..16418215 116..601 100 <- Minus
arm_3R 16418279..16418393 1..115 100   Minus

FI18513.hyp Sequence

Translation from 0 to 1403

> FI18513.hyp
VTEQEEEAQPHVCEFLHFKSRIVYLMFLRRLLNDYTKAVRLKTLCNPWNR
HKSFAAAMSEALDKLEVEKEARKEAKELEGEAVKDANRIKRTLKRKKWVD
WKEQDEKDAANGVKRAPFDPADRIKRKKSAILLSYCGANYYGMQRNPGMQ
TIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGVSAARQVCSVKL
PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTYTYTLPTVAFA
PFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSS
KRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGN
TTAATLERALTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTW
QAQEAQVQEFIEREIFSQIYKTEAEQRNMLDWIGTLHYHSYDTRTEDAPP
PSSEDKKVKGGDDDNDE*

FI18513.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4159-PB 442 CG4159-PB 1..442 26..467 2307 100 Plus
CG4159-PA 410 CG4159-PA 1..410 58..467 2135 100 Plus

FI18513.pep Sequence

Translation from 0 to 1403

> FI18513.pep
VTEQEEEAQPHVCEFLHFKSRIVYLMFLRRLLNDYTKAVRLKTLCNPWNR
HKSFAAAMSEALDKLEVEKEARKEAKELEGEAVKDANRIKRTLKRKKWVD
WKEQDEKDAANGVKRAPFDPADRIKRKKSAILLSYCGANYYGMQRNPGMQ
TIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGVSAARQVCSVKL
PEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTYTYTLPTVAFA
PFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSS
KRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGN
TTAATLERALTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTW
QAQEAQVQEFIEREIFSQIYKTEAEQRNMLDWIGTLHYHSYDTRTEDAPP
PSSEDKKVKGGDDDNDE*

FI18513.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18329-PA 410 GF18329-PA 1..410 58..467 1956 87.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15313-PA 410 GG15313-PA 1..410 58..467 2138 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16145-PA 395 GH16145-PA 1..379 67..447 1673 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pus1-PB 442 CG4159-PB 1..442 26..467 2307 100 Plus
Pus1-PA 410 CG4159-PA 1..410 58..467 2135 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22173-PA 401 GI22173-PA 1..401 58..467 1796 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13924-PA 409 GL13924-PA 1..409 58..467 1866 85.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17995-PA 409 GA17995-PA 1..409 58..467 1862 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23177-PA 411 GM23177-PA 1..411 58..467 2160 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20050-PA 411 GD20050-PA 1..411 58..467 2177 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24293-PA 408 GJ24293-PA 1..408 58..467 1823 82 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22713-PA 412 GK22713-PA 21..409 81..466 1666 79.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25055-PA 410 GE25055-PA 1..410 58..467 2122 95.4 Plus