Clone FI18620 Report

Search the DGRC for FI18620

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:186
Well:20
Vector:pFlc-1
Associated Gene/Transcriptfand-RA
Protein status:FI18620.pep: gold
Sequenced Size:2804

Clone Sequence Records

FI18620.complete Sequence

2804 bp assembled on 2012-02-07

GenBank Submission: BT133178.1

> FI18620.complete
GGCATTTCGATCAGCTGTTTTCGTGGGACGCGCATGAGAAAATTATTGTT
TGCGGCATTTCATGAAAATCGCGAAAAATGGTGACAAAAACGATAAAATC
TCTGAATTTAGAGATCAATTTCGAAGTGGAGGATGTGCCGTATGAGGAGG
AAATCCTTCGAAACGCCTACTCCGTAAAACATTGGCTGCGCTACATTGAT
CACAAAGCGAAGGCGCCGAATAATGGTGTTAACATGGTCTATGAGCGTGC
TCTGAAAGAGCTTCCTGGCAGCTATAAGATCTGGCACAATTACCTGAGAA
CTCGCAGGAAGCAGGTGCGCGGCAAGATACCCACGGATCCCATGTACGAG
GAGGTCAACAGTGCCTTCGAACGTGCACTGGTGTTTATGCACAAAATGCC
ACGTATCTGGATGGACTACGGTGCCTTCATGACCTCGCAATGCAAGATTA
CCCGCACCCGGCACGTTTTCGATCGGGCTCTAAGGGCTCTGCCCATCACG
CAGCACGGCAGGATTTGGCCACTGTATTTGCAGTTTGTACGCCGCTTTGA
AATGCCGGAAACAGCACTGCGAGTCTACCGTCGATATCTGAAACTCTTTC
CCGAGGACACAGAGGAATATGTGGACTACCTACAGGAAGCAGATCGGCTG
GACGAAGCTGCCCAGCAGCTGGCGCACATCGTCGACAACGAGCACTTCGT
TTCCAAACACGGCAAGTCCAATCATCAGCTGTGGAACGAATTGTGCGACC
TCATCTCGAAGAATCCACACAAGGTGCACTCCTTGAACGTGGACGCCATC
ATTCGCGGTGGGCTGCGTCGCTACACCGATCAGCTGGGCCACCTGTGGAA
CTCTCTGGCGGATTACTATGTGCGTTCCGGCTTATTTGATCGGGCAAGAG
ATATATACGAGGAAGCCATTCAAACTGTGACCACCGTAAGAGACTTCACC
CAAGTCTTTGATGAATACGCACAGTTCGAGGAACTCTCGCTGAACAGACG
TATGGAGCAGGTAGCTGCCAATGAGGCGGCCACCGAGGAGGACGACATTG
ACGTTGAACTGCGGCTCTCACGCTTCGAATACCTCATGGAGCGCCGTTTG
CTGCTGTTGAATAGTGTGCTTCTGCGCCAGAATCCGCACAACGTGCACGA
GTGGCACAAGCGGGTGACACTGTACGAGGACAAGCCCGCCGAGATCATCA
GTACGTACACCGAGGCCGTGCAAACAGTGCAGCCGAAGCAGGCGGTCGGC
AAACTACACACTCTCTGGGTGGAGTTCGCCAAGTTCTACGAGGCCAACGG
ACAGGTGGAGGATGCTCGTGTGGTCTTCGAACGCGGCACTGAGGTTGAGT
ATGTTAAAGTAGAGGATCTGGCGGCGGTGTGGTGCGAATGGGCAGAGATG
GAGTTACGGCAACAGCAGTTCGAGGCGGCACTCAAGCTGATGCAAAGGGC
GACGGCCATGCCAAAGCGAAAGATTGCCTATTATGATGATACGGAAACGG
TGCAGGCGCGCCTTCATCGCTCGCTAAAAGTGTGGTCCATGTACGCGGAT
TTGGAGGAGTCATTCGGCACATTCAAGACGTGCAAAGCCGTCTACGAGCG
GATTATTGATCTGAAAATCTGTACGCCACAGATCATTATCAATTACGGAA
TGTTCCTCGAGGAGCACAACTACTTTGAGGAAGCCTACCGAGCCTATGAG
AAGGGCATCTCTCTGTTCAAGTGGCCCAATGTCTACGACATTTGGAACTC
TTATCTAACCAAATTTTTGGAGCGCTATGGCGGCACAAAACTGGAGCGAG
CCAGAGATCTCTTCGAACAGTGCCTGGATCAGTGTCCTCCCGAGCATGCT
AAGTACTTTTATTTACTGTATGCTAAGTTGGAAGAGGAGCACGGTCTCGC
CCGGCATGCCATGTCGGTCTATGATCGTGCCACGTCTGCTGTCAAAGAAG
ATGAGATGTTCGACATGTACAACATATTTATAAAGAAGGCAGCCGAGATC
TATGGCCTGCCACGTACCCGCGAGATCTATGAGAAGGCCATCGAATCGCT
GCCCGAGCAGAATATGCGCCACATGTGCGTTAAGTTTGCTGAGTTGGAAA
CGAAGTTGGGCGAAGTGGATCGAGCTAGAGCCATCTATGCTCATTGCTCA
CAGGTTTGTGATCCCCGCATCACTGCAGACTTTTGGCAAACTTGGAAGGA
GTTCGAAGTGCGTCACGGCAACGAAGACACAATGCGCGAAATGCTGCGCA
TCAAGCGCTCTGTGCAGGCCACTTACAATACGCAGGTGAACATGATGGCC
GCCCAATTCCTGAGCACAAACAACGGAGCGGCTGCGGATGCTGGAGCAGG
AGCTGGACCGGATGCCATGCGATTGCTGGAGGAGAAAGCTCGCCAGGCGG
CAGCCGAGTCCAAACAGAAGCCCATCGAGAAGGCGGCCTCGAATATTATG
TTTGTGCGCGGTGAGACTCAGGGTGGTGCTAAGGATAAAAAGGATACGGT
CGTCAATCCTGATGAGATCGACATTGGAGACAGCGACGAGGACGATGAGG
AGGAGGACGACGATGAGGAGAACGAGATGACGAACGAGAATCAGGCCAGT
GCAGCGGTCACGAAAACCGACGAGGAAGGCCTGGTCATGAAGAAACTGCG
CTTCGAACAAAAGGCCATTCCAGCCAAGGTCTTCGGCAGCCTCAAGCCCT
CAAATCAAGGCGACTCTGATGGAGAGTAAATGTTTATACATATATATGAC
TTTTTTCGGGGTAAATACATGTATGTCGAAAGTTTTACAAAAAAAAAAAA
AAAA

FI18620.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9481130..9483162 123..2155 10165 100 Plus
chr2R 21145070 chr2R 9483221..9483858 2151..2788 3190 100 Plus
chr2R 21145070 chr2R 9480952..9481072 3..123 605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13593829..13595861 123..2155 10165 100 Plus
2R 25286936 2R 13595920..13596559 2151..2790 3200 100 Plus
2R 25286936 2R 13593651..13593771 3..123 605 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:02:36 has no hits.

FI18620.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:03:44 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9480950..9481071 1..122 99 -> Plus
chr2R 9481130..9483160 123..2153 100 -> Plus
chr2R 9483224..9483598 2154..2528 100 == Plus
chr2R 9483654..9483858 2584..2788 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-07 18:18:31 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6197-RA 1..2652 78..2729 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:06:46 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6197-RA 1..2652 78..2729 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:19:29 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
fand-RA 1..2652 78..2729 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-07 18:18:31 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6197-RA 1..2788 2..2788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:06:46 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6197-RA 6..2793 1..2788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:19:29 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
fand-RA 6..2793 1..2788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:44 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13593649..13593770 1..122 99 -> Plus
2R 13593829..13595859 123..2153 100 -> Plus
2R 13595923..13596557 2154..2788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:44 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13593649..13593770 1..122 99 -> Plus
2R 13593829..13595859 123..2153 100 -> Plus
2R 13595923..13596557 2154..2788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:44 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13593649..13593770 1..122 99 -> Plus
2R 13593829..13595859 123..2153 100 -> Plus
2R 13595923..13596557 2154..2788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:06:46 Download gff for FI18620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9481154..9481275 1..122 99 -> Plus
arm_2R 9481334..9483364 123..2153 100 -> Plus
arm_2R 9483428..9484062 2154..2788 100   Plus

FI18620.hyp Sequence

Translation from 77 to 2728

> FI18620.hyp
MVTKTIKSLNLEINFEVEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNG
VNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEEVNSAFERA
LVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIWPLY
LQFVRRFEMPETALRVYRRYLKLFPEDTEEYVDYLQEADRLDEAAQQLAH
IVDNEHFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDAIIRGGLRRYT
DQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EELSLNRRMEQVAANEAATEEDDIDVELRLSRFEYLMERRLLLLNSVLLR
QNPHNVHEWHKRVTLYEDKPAEIISTYTEAVQTVQPKQAVGKLHTLWVEF
AKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCEWAEMELRQQQFEA
ALKLMQRATAMPKRKIAYYDDTETVQARLHRSLKVWSMYADLEESFGTFK
TCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAYEKGISLFKWP
NVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAK
LEEEHGLARHAMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREI
YEKAIESLPEQNMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDPRITA
DFWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMMAAQFLSTNNG
AAADAGAGAGPDAMRLLEEKARQAAAESKQKPIEKAASNIMFVRGETQGG
AKDKKDTVVNPDEIDIGDSDEDDEEEDDDEENEMTNENQASAAVTKTDEE
GLVMKKLRFEQKAIPAKVFGSLKPSNQGDSDGE*

FI18620.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
fand-PA 883 CG6197-PA 1..883 1..883 4641 100 Plus
crn-PA 702 CG3193-PA 213..565 397..763 235 25.7 Plus
crn-PA 702 CG3193-PA 79..419 397..712 213 21.4 Plus
crn-PA 702 CG3193-PA 19..355 439..790 161 20.7 Plus

FI18620.pep Sequence

Translation from 77 to 2728

> FI18620.pep
MVTKTIKSLNLEINFEVEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNG
VNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEEVNSAFERA
LVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIWPLY
LQFVRRFEMPETALRVYRRYLKLFPEDTEEYVDYLQEADRLDEAAQQLAH
IVDNEHFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDAIIRGGLRRYT
DQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EELSLNRRMEQVAANEAATEEDDIDVELRLSRFEYLMERRLLLLNSVLLR
QNPHNVHEWHKRVTLYEDKPAEIISTYTEAVQTVQPKQAVGKLHTLWVEF
AKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCEWAEMELRQQQFEA
ALKLMQRATAMPKRKIAYYDDTETVQARLHRSLKVWSMYADLEESFGTFK
TCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAYEKGISLFKWP
NVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAK
LEEEHGLARHAMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREI
YEKAIESLPEQNMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDPRITA
DFWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMMAAQFLSTNNG
AAADAGAGAGPDAMRLLEEKARQAAAESKQKPIEKAASNIMFVRGETQGG
AKDKKDTVVNPDEIDIGDSDEDDEEEDDDEENEMTNENQASAAVTKTDEE
GLVMKKLRFEQKAIPAKVFGSLKPSNQGDSDGE*

FI18620.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13706-PA 882 GF13706-PA 1..882 1..883 4237 92 Plus
Dana\GF22206-PA 688 GF22206-PA 213..566 397..763 211 25.6 Plus
Dana\GF22206-PA 688 GF22206-PA 79..419 397..712 171 22.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20394-PA 882 GG20394-PA 1..882 1..883 4681 97.7 Plus
Dere\GG12634-PA 702 GG12634-PA 213..565 397..759 203 25.6 Plus
Dere\GG12634-PA 702 GG12634-PA 79..419 397..712 164 22 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21027-PA 891 GH21027-PA 2..891 1..883 4061 89.2 Plus
Dgri\GH12311-PA 707 GH12311-PA 213..582 397..773 207 25.4 Plus
Dgri\GH12311-PA 707 GH12311-PA 79..430 397..723 170 22.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
fand-PA 883 CG6197-PA 1..883 1..883 4641 100 Plus
crn-PA 702 CG3193-PA 213..565 397..763 235 25.7 Plus
crn-PA 702 CG3193-PA 79..419 397..712 213 21.4 Plus
crn-PA 702 CG3193-PA 19..355 439..790 161 20.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18628-PA 870 GI18628-PA 1..870 1..883 3992 88.3 Plus
Dmoj\GI21455-PA 705 GI21455-PA 213..567 397..763 190 25.6 Plus
Dmoj\GI21455-PA 705 GI21455-PA 79..430 397..723 164 21.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17467-PA 848 GL17467-PA 1..818 1..817 4047 92.7 Plus
Dper\GL13392-PA 680 GL13392-PA 200..556 393..763 207 25.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19432-PA 884 GA19432-PA 1..882 1..881 4229 90.4 Plus
Dpse\GA22854-PA 689 GA22854-PA 213..566 397..760 205 25.6 Plus
Dpse\GA22854-PA 689 GA22854-PA 79..419 397..712 159 22.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21482-PA 443 GM21482-PA 1..443 441..883 2345 97.5 Plus
Dsec\GM21481-PA 421 GM21481-PA 1..398 1..398 2135 98.5 Plus
Dsec\GM18901-PA 702 GM18901-PA 213..565 397..759 204 26.1 Plus
Dsec\GM18901-PA 702 GM18901-PA 79..419 397..712 166 20.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21637-PA 884 GJ21637-PA 1..884 1..883 4195 90.2 Plus
Dvir\GJ16476-PA 693 GJ16476-PA 213..579 397..771 196 25 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15972-PA 886 GK15972-PA 1..886 1..883 3962 86.4 Plus
Dwil\GK16333-PA 693 GK16333-PA 213..580 397..771 202 23.6 Plus
Dwil\GK16333-PA 693 GK16333-PA 79..430 397..723 161 20.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12556-PA 882 GE12556-PA 1..882 1..883 4699 98.2 Plus
Dyak\GE16963-PA 702 GE16963-PA 213..565 397..763 205 25 Plus
Dyak\GE16963-PA 702 GE16963-PA 79..430 397..723 163 20.7 Plus