Clone FI18642 Report

Search the DGRC for FI18642

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:186
Well:42
Vector:pFlc-1
Associated Gene/TranscriptCG15117-RB
Protein status:FI18642.pep: gold
Sequenced Size:2352

Clone Sequence Records

FI18642.complete Sequence

2352 bp assembled on 2012-02-07

GenBank Submission: BT133176.1

> FI18642.complete
AGTTACCCCGCAGCGCCGAACGTAGCCGCAAGAAACCGGCAATCTCCGGC
TGAAACAATTGCGGATAGTTGAGATCCATCCCCGCAACGAATCCAGTGAA
TGCCAACATGCATCTGAGGATCCGTCTCACGTGTCGCAAATATGAAATTT
GGGCTCTGTCCATCTTCTCCCTGGTCACTGGTCTTTATGTCCTGCACTTC
TCCATAGCTCTGATCCTGGTCAACAAAGAGGTGCCCCAAACGCGCGGAAT
GCTGTACCCCAGGGAATCGGAGACGCGGGAGGTGCGATCTCTGGACGGGA
TCTGGAACTTTGTGCGCTCCGACCAGGCGAATCCCACGCAGGGCGTCCGG
GATGAGTGGTATGCCAAGGAGTTGAGCAAGAGCAGGCCCACAATACCCAT
GCCGGTGCCGGCATCCTATAATGACATAACCACGGACAATTTGAGGGATC
ACGTGGGCACAGTGTGGTACGACCGCAAGTTCTTTGTGCCCCGATCGTGG
TCAAAGGATCAGAGGATATGGCTGCGATTCGGCAGTGTTCACTATGAGGC
ATATGTGTGGATCAACGGCCAGAAGGTGGTGAAGCATGAAATGGGTCACC
TACCCTTCGAGGCGGAGGTCACCGATCTTCTGAGCTATGGAGCCGAGAAT
CGGATCACCGTTATGTGCGACAATGCTCTGATTCAGACAACTGTGCCGCA
GGGCAGGATTACGGAAGTGCCCAACGATGGTGGCATGACCATTGTGCAGA
GCTACACCTTTGACTTCTTTAACTATGCGGGAATCCACAGGAGCGTGCAT
CTTTACACCACGCCCCGTACTTTTATCGAGGAGGTTGAGGTCACCACAAA
CCTTTCAAAGGATGCCACCGTTGGCGAAGTGTTCTATAGCGTAAGCGTGA
ATGGCAGCGCTGCCAACGAGGCAGATAATGTCTTGCAAATCCAGGCCAAT
TTGTACGATAAGGATGGCATATTGGTGGCGAATGCCACGTCGGACCAAAA
ACTTGGCGGCAAGCTGCAAGTGAACCCGGTGAAGCCCTGGTGGCCCTACC
TAATGCATTCCGAACCGGGTTATCTGTACCAGCTGGAGATCAAATTGCTG
GCGACCAACGATGAGCTCCTGGATGTCTACCGACTGAAAGTGGGAATACG
CACACTAAGTTGGAACAGCCAGCAGTTCCTGATCAACGGCAAGCCCGTTT
ACTTCCGTGGTTTTGGACGACACGAAGATTCGGATATCAGGGGTAAGGGT
CTGGACAATGCACTGATGGTGCGCGATTTCAATCTGCTCAAGTGGATTGG
AGCGAATGCGTATCGCACGTCGCATTATCCCTACTCCGAGGAGTCCATGC
AGTTTGCGGATGAGCACGGCATCATGATCATCGACGAATGTCCCAGTGTG
GATACAGAAAACTTTAGCCAGGAGCTGCTGGGCAAGCACAAATCGTCGCT
GGAGCAGCTCATCCATCGGGATCGGAATCATCCAAGTGTGGTGATGTGGT
CCATTGCCAATGAACCCCGGACTGGTAGCGTGAGTGCGGATTCGTACTTT
GAATTAGTGGCCAACTTCACACGGTCTCTGGATAAAACCCGACCCATCAC
GGCTGCCATTGCTGTTTCAAACACCCAGGATAAGGCGGGCCGCTCTCTGG
ACATCATCAGCTTCAATCGCTACAATGCCTGGTACTCAAATGCCGGACGT
CTGGACATGATAACCCAGAATGTGATCGACGAGGCCATTGCCTGGAATAA
ACGCTACAACAAACCCATTATCATGTCTGAATATGGAGCAGATACCTTGG
AGGGCTTGCATATGCAACCTGCTTATGTGTGGTCGGAGGAGTTCCAGACG
GAGGTGTTTTCCCGCCATTTTAAGGCCTTCGATGAGCTGCGCAAGAAGGG
CTGGTTCATTGGCGAGTTTGTATGGAACTTTGCGGACTTTAAGACAGCAC
AAAGCTACACCCGCGTGGGAGGCAATAAAAAGGGTGTTTTCACCCGCGCG
CGCCAACCCAAAGCGGCAGCTCATCTCCTTCGCAAAAGATACTTTGCATT
GGGCAGAGATTTGGACCAGTGCAGCTTCCCGGAAGATCTCTTCACCTACA
TCGCCGATCTGATATCCTAATGGTTGGGAGCCAGTTGATGGTGCCCAAAG
TATTCGGCCACTGTAAATAAGTTTACCGAGAAAAACTTTATCCTCGGACT
TGCATTTTAGCCCGACTACCATTCCGCTGCATTGCCCTGTACAATATAAA
ATGGTTAGCTCTAGTTGATTGTATTTTTGTATGTATTTGTATGTTTAAGA
GAATAAATGAAAGTGCATTATTTATATTTACCACACAAAAAAAAAAAAAA
AA

FI18642.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15010625..15011163 1408..870 2695 100 Minus
chr2R 21145070 chr2R 15011663..15012067 557..153 2025 100 Minus
chr2R 21145070 chr2R 15009357..15009739 2336..1954 1915 100 Minus
chr2R 21145070 chr2R 15011231..15011544 870..557 1570 100 Minus
chr2R 21145070 chr2R 15010036..15010213 1814..1637 890 100 Minus
chr2R 21145070 chr2R 15014596..15014748 153..1 765 100 Minus
chr2R 21145070 chr2R 15010421..15010564 1552..1409 720 100 Minus
chr2R 21145070 chr2R 15009797..15009937 1954..1814 705 100 Minus
chr2R 21145070 chr2R 15010273..15010358 1638..1553 430 100 Minus
chr3R 27901430 chr3R 27592639..27592853 1489..1275 340 77.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19123499..19124037 1408..870 2695 100 Minus
2R 25286936 2R 19124537..19124941 557..153 2025 100 Minus
2R 25286936 2R 19122229..19122613 2338..1954 1925 100 Minus
2R 25286936 2R 19124105..19124418 870..557 1570 100 Minus
2R 25286936 2R 19122910..19123087 1814..1637 890 100 Minus
2R 25286936 2R 19127470..19127622 153..1 765 100 Minus
2R 25286936 2R 19123295..19123438 1552..1409 720 100 Minus
2R 25286936 2R 19122671..19122811 1954..1814 705 100 Minus
2R 25286936 2R 19123147..19123232 1638..1553 430 100 Minus
3R 32079331 3R 31770281..31770495 1489..1275 340 77.2 Minus
Blast to na_te.dros performed 2019-03-15 13:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 2097..2173 2332..2253 130 69.1 Minus

FI18642.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:04:08 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15009357..15009739 1954..2336 100 <- Minus
chr2R 15009798..15009936 1815..1953 100 <- Minus
chr2R 15010036..15010212 1638..1814 100 <- Minus
chr2R 15010274..15010358 1553..1637 100 <- Minus
chr2R 15010421..15010564 1409..1552 100 <- Minus
chr2R 15010625..15011162 871..1408 100 <- Minus
chr2R 15011231..15011543 558..870 100 <- Minus
chr2R 15011663..15012066 154..557 100 <- Minus
chr2R 15014596..15014748 1..153 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-07 18:47:42 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RB 1..2013 108..2120 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:07:04 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RB 1..2013 108..2120 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:20:15 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RB 1..2013 108..2120 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-07 18:47:42 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RB 1..2336 1..2336 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:07:04 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RB 3..2338 1..2336 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:20:15 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RB 3..2338 1..2336 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:08 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19122231..19122613 1954..2336 100 <- Minus
2R 19122672..19122810 1815..1953 100 <- Minus
2R 19122910..19123086 1638..1814 100 <- Minus
2R 19123148..19123232 1553..1637 100 <- Minus
2R 19123295..19123438 1409..1552 100 <- Minus
2R 19123499..19124036 871..1408 100 <- Minus
2R 19124105..19124417 558..870 100 <- Minus
2R 19124537..19124940 154..557 100 <- Minus
2R 19127470..19127622 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:08 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19122231..19122613 1954..2336 100 <- Minus
2R 19122672..19122810 1815..1953 100 <- Minus
2R 19122910..19123086 1638..1814 100 <- Minus
2R 19123148..19123232 1553..1637 100 <- Minus
2R 19123295..19123438 1409..1552 100 <- Minus
2R 19123499..19124036 871..1408 100 <- Minus
2R 19124105..19124417 558..870 100 <- Minus
2R 19124537..19124940 154..557 100 <- Minus
2R 19127470..19127622 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:08 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19122231..19122613 1954..2336 100 <- Minus
2R 19122672..19122810 1815..1953 100 <- Minus
2R 19122910..19123086 1638..1814 100 <- Minus
2R 19123148..19123232 1553..1637 100 <- Minus
2R 19123295..19123438 1409..1552 100 <- Minus
2R 19123499..19124036 871..1408 100 <- Minus
2R 19124105..19124417 558..870 100 <- Minus
2R 19124537..19124940 154..557 100 <- Minus
2R 19127470..19127622 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:07:04 Download gff for FI18642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15010415..15010591 1638..1814 100 <- Minus
arm_2R 15010653..15010737 1553..1637 100 <- Minus
arm_2R 15010800..15010943 1409..1552 100 <- Minus
arm_2R 15009736..15010118 1954..2336 100 <- Minus
arm_2R 15010177..15010315 1815..1953 100 <- Minus
arm_2R 15011004..15011541 871..1408 100 <- Minus
arm_2R 15011610..15011922 558..870 100 <- Minus
arm_2R 15012042..15012445 154..557 100 <- Minus
arm_2R 15014975..15015127 1..153 100   Minus

FI18642.hyp Sequence

Translation from 107 to 2119

> FI18642.hyp
MHLRIRLTCRKYEIWALSIFSLVTGLYVLHFSIALILVNKEVPQTRGMLY
PRESETREVRSLDGIWNFVRSDQANPTQGVRDEWYAKELSKSRPTIPMPV
PASYNDITTDNLRDHVGTVWYDRKFFVPRSWSKDQRIWLRFGSVHYEAYV
WINGQKVVKHEMGHLPFEAEVTDLLSYGAENRITVMCDNALIQTTVPQGR
ITEVPNDGGMTIVQSYTFDFFNYAGIHRSVHLYTTPRTFIEEVEVTTNLS
KDATVGEVFYSVSVNGSAANEADNVLQIQANLYDKDGILVANATSDQKLG
GKLQVNPVKPWWPYLMHSEPGYLYQLEIKLLATNDELLDVYRLKVGIRTL
SWNSQQFLINGKPVYFRGFGRHEDSDIRGKGLDNALMVRDFNLLKWIGAN
AYRTSHYPYSEESMQFADEHGIMIIDECPSVDTENFSQELLGKHKSSLEQ
LIHRDRNHPSVVMWSIANEPRTGSVSADSYFELVANFTRSLDKTRPITAA
IAVSNTQDKAGRSLDIISFNRYNAWYSNAGRLDMITQNVIDEAIAWNKRY
NKPIIMSEYGADTLEGLHMQPAYVWSEEFQTEVFSRHFKAFDELRKKGWF
IGEFVWNFADFKTAQSYTRVGGNKKGVFTRARQPKAAAHLLRKRYFALGR
DLDQCSFPEDLFTYIADLIS*

FI18642.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-PB 670 CG15117-PB 1..670 1..670 3551 100 Plus
CG15117-PA 656 CG15117-PA 2..656 16..670 3465 100 Plus
CG15117-PC 656 CG15117-PC 2..656 16..670 3462 99.8 Plus
CG15117-PD 648 CG15117-PD 3..648 23..670 3378 98.6 Plus
CG15117-PF 623 CG15117-PF 1..623 48..670 3311 100 Plus

FI18642.pep Sequence

Translation from 107 to 2119

> FI18642.pep
MHLRIRLTCRKYEIWALSIFSLVTGLYVLHFSIALILVNKEVPQTRGMLY
PRESETREVRSLDGIWNFVRSDQANPTQGVRDEWYAKELSKSRPTIPMPV
PASYNDITTDNLRDHVGTVWYDRKFFVPRSWSKDQRIWLRFGSVHYEAYV
WINGQKVVKHEMGHLPFEAEVTDLLSYGAENRITVMCDNALIQTTVPQGR
ITEVPNDGGMTIVQSYTFDFFNYAGIHRSVHLYTTPRTFIEEVEVTTNLS
KDATVGEVFYSVSVNGSAANEADNVLQIQANLYDKDGILVANATSDQKLG
GKLQVNPVKPWWPYLMHSEPGYLYQLEIKLLATNDELLDVYRLKVGIRTL
SWNSQQFLINGKPVYFRGFGRHEDSDIRGKGLDNALMVRDFNLLKWIGAN
AYRTSHYPYSEESMQFADEHGIMIIDECPSVDTENFSQELLGKHKSSLEQ
LIHRDRNHPSVVMWSIANEPRTGSVSADSYFELVANFTRSLDKTRPITAA
IAVSNTQDKAGRSLDIISFNRYNAWYSNAGRLDMITQNVIDEAIAWNKRY
NKPIIMSEYGADTLEGLHMQPAYVWSEEFQTEVFSRHFKAFDELRKKGWF
IGEFVWNFADFKTAQSYTRVGGNKKGVFTRARQPKAAAHLLRKRYFALGR
DLDQCSFPEDLFTYIADLIS*

FI18642.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11492-PA 670 GF11492-PA 1..667 1..667 3213 87.4 Plus
Dana\GF11493-PA 685 GF11493-PA 49..676 45..666 2049 60 Plus
Dana\GF11494-PA 472 GF11494-PA 1..356 68..446 823 44.6 Plus
Dana\GF11494-PA 472 GF11494-PA 354..445 568..658 295 57.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20922-PA 670 GG20922-PA 1..670 1..670 3549 97.5 Plus
Dere\GG11851-PA 686 GG11851-PA 47..682 38..669 2125 60.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22627-PA 680 GH22627-PA 1..669 1..668 2985 79.7 Plus
Dgri\GH22628-PA 699 GH22628-PA 60..697 39..667 2070 60.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-PB 670 CG15117-PB 1..670 1..670 3551 100 Plus
CG15117-PA 656 CG15117-PA 2..656 16..670 3465 100 Plus
CG15117-PC 656 CG15117-PC 2..656 16..670 3462 99.8 Plus
CG15117-PD 648 CG15117-PD 3..648 23..670 3378 98.6 Plus
CG15117-PF 623 CG15117-PF 1..623 48..670 3311 100 Plus
CG15117-PE 623 CG15117-PE 1..623 48..670 3311 100 Plus
betaGlu-PA 686 CG2135-PA 47..679 38..666 2130 61.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20626-PA 681 GI20626-PA 1..669 1..668 2983 79.1 Plus
Dmoj\GI20627-PA 690 GI20627-PA 60..688 41..668 1994 58.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11760-PA 675 GL11760-PA 1..668 1..668 3157 85 Plus
Dper\GL11761-PA 691 GL11761-PA 50..681 45..666 2098 61.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13505-PA 675 GA13505-PA 1..668 1..668 3157 85 Plus
Dpse\GA24063-PA 691 GA24063-PA 50..681 45..666 2104 61.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19850-PA 419 GM19850-PA 4..419 255..670 2197 97.6 Plus
Dsec\GM16415-PA 686 GM16415-PA 47..682 38..669 2120 60.7 Plus
Dsec\GM19849-PA 242 GM19849-PA 1..222 1..222 1181 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25338-PA 670 GD25338-PA 1..670 1..670 3579 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19669-PA 680 GJ19669-PA 1..671 1..670 3012 80 Plus
Dvir\GJ19670-PA 685 GJ19670-PA 52..683 45..667 2072 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17841-PA 681 GK17841-PA 1..670 1..668 3052 82.4 Plus
Dwil\GK17842-PA 680 GK17842-PA 48..668 45..664 2019 59.5 Plus
Dwil\GK17843-PA 611 GK17843-PA 12..600 45..666 1678 52.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13860-PA 670 GE13860-PA 1..670 1..670 3555 97.5 Plus
Dyak\GE23298-PA 688 GE23298-PA 49..684 38..669 2138 61.3 Plus