Clone FI18759 Report

Search the DGRC for FI18759

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:187
Well:59
Vector:pFlc-1
Associated Gene/Transcriptcyr-RB
Protein status:FI18759.pep: gold
Sequenced Size:2463

Clone Sequence Records

FI18759.complete Sequence

2463 bp assembled on 2012-02-08

GenBank Submission: BT133192.1

> FI18759.complete
AGTGGTAGTTGCTTGCCATGAAATTCAATAGAACAAGCTGTTGCGGTTGC
TCTTGTATTATTATTTTATCGAAATGTCGTCCATAAAGTTTGCCCATAAA
TGAATGATTAGCCCGGTCTGCACTTTAAACGCTGGCGGTGCGCACTTTGA
GCCAATTGGACGATCCCTTTCGTGGACTACCCTAAATATGTGGTTTCATA
TATATGTAGTATAACCATTTTCTTGTCTACCGCTCAACTTTATCGGTTTG
CCCTGATAAGACACATAAGACACAAGTGCAACAAGTTCTAATCGTTTGGC
TTCCAGTAGTGAAATGGTAGCTGTGGGAGACAAGATTCTCGAACTTGGAC
TGGGAGTAGGCCAATTAAGAGTTAGCCACGCGGCCGCACGAACAGGTGTC
GTCGCTTCCAACACAGCAACATCTAGTGACAGCAGCAGCAACATCCAAAG
ACAGCAGCAACAAGTGGCATCATTATCGTTTTGCGGTTTTGATCATCGGC
GGGGCGGTTTGCCGTTGCCACTGGTAGAAAACGGGAAATCGGAAACATGT
TCTCCTCCAGCGCCTCGGCCGCGTCCACATCCTTCAATCTCGGCCAGCTG
CTGCCATTGGCCATCGCCATCGGAGTGTTGCATCTGCCGCAGTTTCTGTG
TCATGCTGCCTGGACAACCAGAACGCCGGAAAGTTTCATTAACGATACGA
CCACCACCACCACCACCACCACCACCACCACAACCAAGACCATGCAAATC
CAGGCGATGCAGGTGAACTGCAGCCGGGAGCTGCTCGAGATGCATCTGGA
GTTGAGCCGTCCCTTTCGCGGATTACTCTACGCCAAGGACTTTCCGCTGG
AGTGTCGCGCACGTGGCAAGGACTCGACGCGTCTGCATCTGCGCATCCCA
ACATCGGGTTGCGGAGTGAGGGCAGAGCCACTGGAGGACGGCAGTCTGGA
GTATACGGTGCGTGTGATGCTGCAAAAGGAGCAGAAGTTGCGCCAGAGCA
CCGACATCCTTAGCTCGGTGAGATGCCAACTTCCGGCCAATGCGATGGGC
ATGCCACTTCCGGTGTTGCGACAGGAAAAGGGTCACGATAGAAATGCCAG
GATGCGAGCCTTGGCAGCTGCTGCTGCAGTTCCAGCTCTCGGCGCCACTT
CGTCCATCAATCAACAGCAGCGGGAGACGCCACGCGTTAGGATCTGGTTA
GAATTGGGCGGTCCCAATGGCACCGGATCCGTGGAGGTGGGCGTCGCCAC
CACGCTGACGGTGAGAGCCATCGTGCCCGGAAACATCGGAGTGCGGGTGG
TGGACTGTGCGGCACTCGATGGACTGGGCGAATCCACGCAGCAATTACTC
GATGCCCGCGGCTGTCCCATCGACGAGCAGGTAATGCCCGCTCTGCACAC
CCAGCACCGACCGGCGGAGGAGGGTTGGTCCAAGCAGCACGAGGAAGACC
TGGTCGAGCGGACGTTCGCGGCCACGTTTCCCGCCTTCAAGTTCCCGGAC
CGCGAGCGCCTACACGTCAGCTGTGGCGTGCAACTTTGCAAGGGGAAGTG
TCCGACTCTAAATTGTCGCCTAAAGACGCCTCCGCCGGCGTTGAGCGCCG
AGCAGCATCTGGCACGCATCGAGGTTTTCAATTCGCTGGCCGTGACAGCA
CCCCAAATCGAGGTGGACCGCCTGCGCTACGATAGGCGGCACAACATGAG
CGGCGAGGATTATGCGCCGCATGTGAGGGGTCAAGTGATGCCCGGCGAGG
GAACGCTCTGTCTGTCCATCTCCAAGCTGGCCATCTCGTTCTGCGTTCTG
GGCCTGATCTTTCTGGTGGCCGTGGTGGTGGCCATCTTTTCGCTGATTCG
ATCGCGTCGCCGGGAGCGTCGTCATGGAGCTGGCTTGAGTCTGGGTCTGG
GAGTAGGACTGGGCATCGCCGGGACGAGCACGTCGAACAGCAGCAGTCGA
TTGCATCGGGATCGGGCCGAGATTTGCACCTCGATGTTCTCATCCAGCAG
CGAATCGGCGCAATCGCAGCCGCGTTTCGGGGCCAAGTTCCTGATGCCCT
ACTATCCGAATACCCTGCCCTATGGCCGTGTCTACTAATTGATTGCGTGG
CGGAGTTATTTAGTGGAGGCGCCTCCCAGAGACTGACGGAATCGTCTAAC
GAGTGGTACACCAAAATAAGGTCTAACTTTAGCAATATTATGCGTAGTTC
TGTAACTTTTCGGTTGGTTGGAAAGGATCTTGAAAGCGTTTTGCAAGCGG
TTTGGGGCCAAAATGCGTTTTGATATCCTTTCGCTGTAGCTGTATGTAAT
ATCTACATAGATCTAAGAGTAAAAACCTAACATAGTTGCATCCAAATCAA
ACTTAAGGAACTTTGAGTCTTTAAAGGTATTTTTTATATATTTTGTTTAC
CTTTTTTATTTCCTGAACAAGTTTTAATTTGGAATAAACATACTTCTAAT
ATAAAAAAAAAAA

FI18759.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8013157..8013907 2452..1702 3755 100 Minus
chrX 22417052 chrX 8018925..8019673 1091..328 3515 97.6 Minus
chrX 22417052 chrX 8027224..8027552 329..1 1630 99.7 Minus
chrX 22417052 chrX 8018552..8018845 1382..1089 1455 99.7 Minus
chrX 22417052 chrX 8015072..8015251 1557..1378 900 100 Minus
chrX 22417052 chrX 8014247..8014392 1703..1558 700 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8127061..8127824 1091..328 3820 100 Minus
X 23542271 X 8121279..8122030 2453..1702 3760 100 Minus
X 23542271 X 8135385..8135713 329..1 1630 99.7 Minus
X 23542271 X 8126688..8126981 1382..1089 1470 100 Minus
X 23542271 X 8123192..8123371 1557..1378 900 100 Minus
X 23542271 X 8122369..8122514 1703..1558 730 100 Minus
Blast to na_te.dros performed 2019-03-15 13:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 4815..4900 1897..1811 117 64 Minus

FI18759.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:09:11 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8013157..8013906 1703..2452 100 <- Minus
chrX 8014248..8014392 1558..1702 98 <- Minus
chrX 8015072..8015248 1381..1557 100 <- Minus
chrX 8018554..8018842 1092..1380 99 <- Minus
chrX 8018925..8019671 330..1091 94 <- Minus
chrX 8027224..8027552 1..329 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-08 13:13:02 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
cyr-RB 1..1542 547..2088 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:07:55 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
cyr-RB 1..1542 547..2088 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:22:00 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
cyr-RB 1..1542 547..2088 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 13:13:02 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
cyr-RB 1..2452 1..2452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:07:55 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
cyr-RB 1..2452 1..2452 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:22:00 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
cyr-RB 1..2452 1..2452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:11 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
X 8121280..8122029 1703..2452 100 <- Minus
X 8122370..8122514 1558..1702 100 <- Minus
X 8123192..8123368 1381..1557 100 <- Minus
X 8126690..8126978 1092..1380 100 <- Minus
X 8127061..8127822 330..1091 100 <- Minus
X 8135385..8135713 1..329 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:11 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
X 8121280..8122029 1703..2452 100 <- Minus
X 8122370..8122514 1558..1702 100 <- Minus
X 8123192..8123368 1381..1557 100 <- Minus
X 8126690..8126978 1092..1380 100 <- Minus
X 8127061..8127822 330..1091 100 <- Minus
X 8135385..8135713 1..329 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:11 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
X 8121280..8122029 1703..2452 100 <- Minus
X 8122370..8122514 1558..1702 100 <- Minus
X 8123192..8123368 1381..1557 100 <- Minus
X 8126690..8126978 1092..1380 100 <- Minus
X 8127061..8127822 330..1091 100 <- Minus
X 8135385..8135713 1..329 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:07:55 Download gff for FI18759.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8015313..8016062 1703..2452 100 <- Minus
arm_X 8016403..8016547 1558..1702 100 <- Minus
arm_X 8017225..8017401 1381..1557 100 <- Minus
arm_X 8020723..8021011 1092..1380 100 <- Minus
arm_X 8021094..8021855 330..1091 100 <- Minus
arm_X 8029418..8029746 1..329 99   Minus

FI18759.hyp Sequence

Translation from 546 to 2087

> FI18759.hyp
MFSSSASAASTSFNLGQLLPLAIAIGVLHLPQFLCHAAWTTRTPESFIND
TTTTTTTTTTTTTKTMQIQAMQVNCSRELLEMHLELSRPFRGLLYAKDFP
LECRARGKDSTRLHLRIPTSGCGVRAEPLEDGSLEYTVRVMLQKEQKLRQ
STDILSSVRCQLPANAMGMPLPVLRQEKGHDRNARMRALAAAAAVPALGA
TSSINQQQRETPRVRIWLELGGPNGTGSVEVGVATTLTVRAIVPGNIGVR
VVDCAALDGLGESTQQLLDARGCPIDEQVMPALHTQHRPAEEGWSKQHEE
DLVERTFAATFPAFKFPDRERLHVSCGVQLCKGKCPTLNCRLKTPPPALS
AEQHLARIEVFNSLAVTAPQIEVDRLRYDRRHNMSGEDYAPHVRGQVMPG
EGTLCLSISKLAISFCVLGLIFLVAVVVAIFSLIRSRRRERRHGAGLSLG
LGVGLGIAGTSTSNSSSRLHRDRAEICTSMFSSSSESAQSQPRFGAKFLM
PYYPNTLPYGRVY*

FI18759.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
cyr-PC 513 CG15335-PC 1..513 1..513 2642 100 Plus
cyr-PB 513 CG15335-PB 1..513 1..513 2642 100 Plus
cyr-PD 454 CG15335-PD 1..454 1..513 1811 76.4 Plus
pio-PE 462 CG3541-PE 13..451 24..452 221 22.4 Plus
pio-PD 462 CG3541-PD 13..451 24..452 221 22.4 Plus

FI18759.pep Sequence

Translation from 546 to 2087

> FI18759.pep
MFSSSASAASTSFNLGQLLPLAIAIGVLHLPQFLCHAAWTTRTPESFIND
TTTTTTTTTTTTTKTMQIQAMQVNCSRELLEMHLELSRPFRGLLYAKDFP
LECRARGKDSTRLHLRIPTSGCGVRAEPLEDGSLEYTVRVMLQKEQKLRQ
STDILSSVRCQLPANAMGMPLPVLRQEKGHDRNARMRALAAAAAVPALGA
TSSINQQQRETPRVRIWLELGGPNGTGSVEVGVATTLTVRAIVPGNIGVR
VVDCAALDGLGESTQQLLDARGCPIDEQVMPALHTQHRPAEEGWSKQHEE
DLVERTFAATFPAFKFPDRERLHVSCGVQLCKGKCPTLNCRLKTPPPALS
AEQHLARIEVFNSLAVTAPQIEVDRLRYDRRHNMSGEDYAPHVRGQVMPG
EGTLCLSISKLAISFCVLGLIFLVAVVVAIFSLIRSRRRERRHGAGLSLG
LGVGLGIAGTSTSNSSSRLHRDRAEICTSMFSSSSESAQSQPRFGAKFLM
PYYPNTLPYGRVY*

FI18759.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20980-PA 513 GF20980-PA 21..513 19..513 1862 79.8 Plus
Dana\GF13633-PA 466 GF13633-PA 88..455 90..452 170 23.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17986-PA 504 GG17986-PA 1..504 1..513 2122 90.7 Plus
Dere\GG22986-PA 462 GG22986-PA 88..451 90..452 163 22.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24865-PA 515 GH24865-PA 9..515 28..513 1667 71 Plus
Dgri\GH20006-PA 473 GH20006-PA 90..462 90..452 177 24.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
cyr-PC 513 CG15335-PC 1..513 1..513 2642 100 Plus
cyr-PB 513 CG15335-PB 1..513 1..513 2642 100 Plus
cyr-PD 454 CG15335-PD 1..454 1..513 1811 76.4 Plus
pio-PE 462 CG3541-PE 13..451 24..452 221 22.4 Plus
pio-PD 462 CG3541-PD 13..451 24..452 221 22.4 Plus
pio-PB 462 CG3541-PB 13..451 24..452 221 22.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14416-PA 538 GI14416-PA 45..538 32..513 1641 70.3 Plus
Dmoj\GI19187-PA 462 GI19187-PA 92..451 90..452 162 23.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20194-PA 546 GL20194-PA 16..546 18..513 1837 75.6 Plus
Dper\GL10225-PA 465 GL10225-PA 91..454 90..452 174 24.1 Plus
Dper\GL17896-PA 606 GL17896-PA 212..589 64..442 161 20.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13654-PA 542 GA13654-PA 16..542 18..513 1823 75.8 Plus
Dpse\GA24126-PA 465 GA24126-PA 91..454 90..452 174 24.1 Plus
Dpse\GA13439-PA 606 GA13439-PA 212..589 64..442 161 20.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11209-PA 508 GM11209-PA 1..508 1..513 2643 97.5 Plus
Dsec\GM11880-PA 462 GM11880-PA 88..451 90..452 166 23.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16127-PA 504 GD16127-PA 1..504 1..513 2617 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18763-PA 511 GJ18763-PA 13..511 19..513 1732 71.8 Plus
Dvir\GJ20249-PA 468 GJ20249-PA 92..457 90..452 166 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10135-PA 512 GK10135-PA 12..512 25..513 1593 64.4 Plus
Dwil\GK19473-PA 453 GK19473-PA 84..369 90..366 154 23.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17480-PA 507 GE17480-PA 15..507 13..513 2205 92 Plus
Dyak\GE14423-PA 462 GE14423-PA 88..451 90..452 166 22.9 Plus