Clone FI18833 Report

Search the DGRC for FI18833

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:188
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG5484-RA
Protein status:FI18833.pep: gold
Sequenced Size:1503

Clone Sequence Records

FI18833.complete Sequence

1503 bp assembled on 2012-01-12

GenBank Submission: BT133010.1

> FI18833.complete
GAACACTAAACTCCGGTCACACAACAAAATGCTTATGGTGATGTGTTAAA
AAGCGAAATTTTGAATACAATTTACTGATCCAGAAAGATGAACTACAATC
CAAATCCGGGTATGCGGAACCCCTCAGCTGCCGGTCGCCCAAGGCCGCCG
AAGCGTGTGAGTGATGTTAACGCCATGGGACCCTCGGCTCCGATGATGGG
CGGTGGCGCCACCTTCATGGCCCCGCCCACCGGCCCCGGAATACTAGATC
CCAATATGTACGGAGCACCTGCTCCGGCCCCGGTCAACAGCTATGGCTTC
GACCCCAATCTCGGCCAGCCCTCGCAGCACATTCAGCAGCCACCACAACA
GCAGCCCGGATACGGATATGGAGCACCACCTCCCCAACAGGCGGCTGGGC
CACCCACCTACGGAATAGGAGCACCTCAGCCTGTAGCTCCACCCACTGGA
CAGTACCCACAGTTCGCCATGTTCCAGCAGCCCATCGTGCAAGACATGGC
TATGCAGTACGGTCAGAAACTAGCGGATCAGGGCAAGCAGATCATGGAGA
ATCAGTTCGAGAAGTGGGTGCCCGTAGCCAAGCTCAAGTACTACTTCGCA
GTGGACAACGCCTACGTGGGCAGGAAGTTGCGCCTTCTGTTTTTCCCCTA
TATGCATAAGGATTGGTCCCTGCGCTACGACCAAGAGCACCCAGTGCAAC
CACGATATGATGTTAATGCGCCAGATCTCTATCTGCCCACCATGGGCTAC
ATCACATACGTGATCGTAGCGGGTTTGCTTCTGGGCATGCAGAAGCGATT
TTCGCCGGAGCAGCTCGGCATTCAGGCCTCCAGCGCCATGGCATATAGCA
TTTTCGAATTGGTCATTTACTCCCTAGCCCTGTACGTAATGAATGTGAAG
ACGAGCCTGAAAACGCTTGATCTGCTGGCATTCACTGGTTATAAGTACGT
TAATATAGTTGTCTGCCTGATGGTTAGCACGCTGTTCTTTAAGTCTGGAT
ATTATATAGCACTGGCGTATACCAGTTTCTCCTTCGGTTTCTTCATGCTC
CGCACGTTGCGGACGAAACTGCTGCAGGACAACTCCCCGGCTGCGCCCAG
TGGAGCCATCAACTACGATCCGTATGGCAATCCACAGCAATTTGACTACA
GCGGCGGGAAAAAGCGCAAACTCTACTTCCTGTTCATGATCGTCGCGGGA
CAGGCGCTGTTCGCCTTCCTGCTCTCCAAGCACCTGTATCTGCCCGAGGC
GGAGGTGCTGACGGTGCCCAAGACCTTCTAACCCACAGGCTTGATAGGTT
AATTTGCATACTCCTTGAGTTAATCGTGGCCAGGGTGGCCACTCACATGT
CGAACGATCCCACAGAGCCTAGGCATTGTGTTTTCCAGCATGAAGTTTGT
GGTTGTCTCATTTGAGACTCGAGCGAGAGAAGCATATTTTTGTTAGAAAC
AAACACATTTTATAAATAAATACCAGCTATGAAAACCAAAAAAAAAAAAA
AAA

FI18833.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22541430..22541969 122..661 2700 100 Plus
chr3R 27901430 chr3R 22542468..22542907 1047..1486 2125 98.9 Plus
chr3R 27901430 chr3R 22542022..22542410 659..1047 1930 99.7 Plus
chr3R 27901430 chr3R 22540994..22541113 2..121 600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26718328..26718867 122..661 2700 100 Plus
3R 32079331 3R 26719366..26719805 1047..1486 2185 99.8 Plus
3R 32079331 3R 26718920..26719308 659..1047 1945 100 Plus
3R 32079331 3R 26717892..26718011 2..121 600 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:23:28 has no hits.

FI18833.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:24:13 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22540992..22541113 1..121 99 -> Plus
chr3R 22541430..22541968 122..660 100 -> Plus
chr3R 22542024..22542410 661..1047 99 -> Plus
chr3R 22542469..22542907 1048..1487 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-12 17:39:00 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5484-RA 1..1194 88..1281 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:57:50 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5484-RA 1..1194 88..1281 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 19:58:00 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5484-RA 1..1194 88..1281 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-12 17:39:00 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5484-RA 43..1529 1..1487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:57:50 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5484-RA 20..1506 1..1487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 19:58:00 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5484-RA 20..1506 1..1487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:13 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26717890..26718011 1..121 99 -> Plus
3R 26718328..26718866 122..660 100 -> Plus
3R 26718922..26719308 661..1047 100 -> Plus
3R 26719367..26719805 1048..1487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:13 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26717890..26718011 1..121 99 -> Plus
3R 26718328..26718866 122..660 100 -> Plus
3R 26718922..26719308 661..1047 100 -> Plus
3R 26719367..26719805 1048..1487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:13 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26717890..26718011 1..121 99 -> Plus
3R 26718328..26718866 122..660 100 -> Plus
3R 26718922..26719308 661..1047 100 -> Plus
3R 26719367..26719805 1048..1487 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:57:50 Download gff for FI18833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22543612..22543733 1..121 99 -> Plus
arm_3R 22544050..22544588 122..660 100 -> Plus
arm_3R 22544644..22545030 661..1047 100 -> Plus
arm_3R 22545089..22545527 1048..1487 99   Plus

FI18833.hyp Sequence

Translation from 87 to 1280

> FI18833.hyp
MNYNPNPGMRNPSAAGRPRPPKRVSDVNAMGPSAPMMGGGATFMAPPTGP
GILDPNMYGAPAPAPVNSYGFDPNLGQPSQHIQQPPQQQPGYGYGAPPPQ
QAAGPPTYGIGAPQPVAPPTGQYPQFAMFQQPIVQDMAMQYGQKLADQGK
QIMENQFEKWVPVAKLKYYFAVDNAYVGRKLRLLFFPYMHKDWSLRYDQE
HPVQPRYDVNAPDLYLPTMGYITYVIVAGLLLGMQKRFSPEQLGIQASSA
MAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVCLMVSTLF
FKSGYYIALAYTSFSFGFFMLRTLRTKLLQDNSPAAPSGAINYDPYGNPQ
QFDYSGGKKRKLYFLFMIVAGQALFAFLLSKHLYLPEAEVLTVPKTF*

FI18833.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5484-PA 397 CG5484-PA 1..397 1..397 2118 100 Plus
CG5484-PC 402 CG5484-PC 1..402 1..397 2094 98.5 Plus
CG5484-PB 393 CG5484-PB 1..393 1..397 2074 98.7 Plus

FI18833.pep Sequence

Translation from 87 to 1280

> FI18833.pep
MNYNPNPGMRNPSAAGRPRPPKRVSDVNAMGPSAPMMGGGATFMAPPTGP
GILDPNMYGAPAPAPVNSYGFDPNLGQPSQHIQQPPQQQPGYGYGAPPPQ
QAAGPPTYGIGAPQPVAPPTGQYPQFAMFQQPIVQDMAMQYGQKLADQGK
QIMENQFEKWVPVAKLKYYFAVDNAYVGRKLRLLFFPYMHKDWSLRYDQE
HPVQPRYDVNAPDLYLPTMGYITYVIVAGLLLGMQKRFSPEQLGIQASSA
MAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVCLMVSTLF
FKSGYYIALAYTSFSFGFFMLRTLRTKLLQDNSPAAPSGAINYDPYGNPQ
QFDYSGGKKRKLYFLFMIVAGQALFAFLLSKHLYLPEAEVLTVPKTF*

FI18833.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16451-PA 403 GF16451-PA 1..403 1..397 1583 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11496-PA 397 GG11496-PA 1..397 1..397 2019 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14235-PA 408 GH14235-PA 1..408 1..397 1416 72.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5484-PA 397 CG5484-PA 1..397 1..397 2118 100 Plus
CG5484-PC 402 CG5484-PC 1..402 1..397 2094 98.5 Plus
CG5484-PB 393 CG5484-PB 1..393 1..397 2074 98.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22142-PA 403 GI22142-PA 1..403 1..397 1506 76.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23107-PA 398 GL23107-PA 135..398 135..397 1186 87.1 Plus
Dper\GL23107-PA 398 GL23107-PA 1..59 1..55 195 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18917-PA 399 GA18917-PA 1..399 1..397 1475 77 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10339-PA 397 GM10339-PA 1..397 1..397 2049 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21299-PA 397 GD21299-PA 1..397 1..397 2060 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24261-PA 407 GJ24261-PA 1..407 1..397 1500 76 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13328-PA 399 GK13328-PA 3..398 1..396 1392 73.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23687-PA 397 GE23687-PA 1..397 1..397 2010 96.5 Plus