Clone FI18835 Report

Search the DGRC for FI18835

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:188
Well:35
Vector:pFlc-1
Associated Gene/TranscriptCG6972-RA
Protein status:FI18835.pep: gold
Sequenced Size:1320

Clone Sequence Records

FI18835.complete Sequence

1320 bp assembled on 2012-02-29

GenBank Submission: BT133290.1

> FI18835.complete
GACACTTCCACTAGACTTTTCCGAACAAACAGAGGCAATTTCGAGGCGAC
TCTCTGCCAAAACGGTTCGCGTGCTACTCGAATCTCTGGAATTCAATGAA
AAGTTCTACAAAAGTTGCATGATCTGGAAAATAAATAACCATATATTCAT
TTTCGGAATTTTGAATAAACAACTGATACCATTTGTGCCCTAGTTGATTT
TTAAATTGTGATTTCTTCGCGACTTTCCCACGATTTGGTGTCGAAAGTGT
AGGAATTTCTGTGTCACTTCTACTAAAATAGCATACCAGAGATGTCAGAG
CCCGCAGCCCAACAACAGCAGTCCCAGAACGGCAAGGAGCGCTCCAAGTC
CACGGAGGAGAAGGAAGTACCACGCGAACCGGCGCTGGTCCTCAAAGACA
TCGATATAAAGACTGAGCTAGAGAGCCTAGTGAAACTGCTCGATGGCAAG
ATCTACAAGGAGGAGGAAGTGGCCATGGAGGAGCTGCATCAGTATCTGAT
CGAGGACGATGGCTCCTGGGCGCTGGGCGACAACTTTCTGATCTTCGTGC
AGCGCGTCCTGCGTGACAATCAGGCCTTCTCGCCGGACACACGGATACAC
CTGATCCGCACGCTGGCCTATGCGGCGCTCAAAGATGATGTGATCATCAT
TCTGCACCAGGATCGAAGGGATCACACACTGATGAACTACGCCCAGGACA
TTGACAAGCAGACGCCCGAGGAGCAGCAGGCCTGGGCCATGTTTATGTGC
AATCTCTTTGAGAACCTGGGTCCCTCCGAATGGCTGTTGTACATTTCGGA
GTGGGAATACAATGGTCAGACCATCTCCAACATACGAGTGACCACCAAGG
TGGCCGTCCACTGCATCCTCTCCAATTGCCCGCAGCTGAAAAATATTGGC
AGCATGATCCTGTACAACATTGCTATTAAGGAAGTGAAGACTGTGGTATT
CGACGATATCGCCGTGGAGCTGGCCATGGCCATTCTTCAGTTCTTCCAGA
GCAGTCCCAACGAAGACCAAATCTTCCGCACCCTGAGGGCCCTCGTTCGA
TTCCTCGAGGTCTCGCAAGACGTACCGATGATCATTCAAATGATTGGACC
GCATCCAAAACAATTCGCCGGCAAGAGCGAGCGCGTGGATGAGCTGATAA
AGATCATTAGTCGCAAGGTGCCCGCCTAAAGGGAGATTTCCACATAAGAG
AATAACCATAACCATAGTTACCCTTTTTCTAATATATATTATAATATATT
CTAGACCCTCACTTTTGTAAAGCATTTTAGCGGCTCAATAAACATTTGTA
CCCCCCGAAAAAAAAAAAAA

FI18835.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18526738..18527076 406..744 1665 99.4 Plus
chr3R 27901430 chr3R 18525495..18525777 2..284 1355 98.6 Plus
chr3R 27901430 chr3R 18527575..18527822 1058..1305 1225 99.6 Plus
chr3R 27901430 chr3R 18527136..18527340 745..949 995 99 Plus
chr3R 27901430 chr3R 18526405..18526529 285..409 610 99.2 Plus
chr3R 27901430 chr3R 18527392..18527508 945..1061 570 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22703254..22703592 406..744 1695 100 Plus
3R 32079331 3R 22702008..22702290 2..284 1415 100 Plus
3R 32079331 3R 22704091..22704338 1058..1305 1240 100 Plus
3R 32079331 3R 22703652..22703856 745..949 1025 100 Plus
3R 32079331 3R 22702919..22703043 285..409 610 99.2 Plus
3R 32079331 3R 22703908..22704024 945..1061 585 100 Plus
Blast to na_te.dros performed 2019-03-15 12:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 8161..8237 107..182 112 62.3 Plus

FI18835.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:56:38 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18526738..18527076 406..744 99 -> Plus
chr3R 18525494..18525777 1..284 98 -> Plus
chr3R 18526405..18526525 285..405 100 -> Plus
chr3R 18527136..18527336 745..945 99 -> Plus
chr3R 18527393..18527506 946..1059 99 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-29 18:31:28 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 1..888 292..1179 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:53:20 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 1..888 292..1179 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:15:57 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 1..888 292..1179 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-29 18:31:27 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 2..1306 2..1306 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:53:20 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 2..1306 2..1306 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:15:57 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 2..1305 2..1305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:56:38 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22702007..22702290 1..284 99 -> Plus
3R 22702919..22703039 285..405 100 -> Plus
3R 22703254..22703592 406..744 100 -> Plus
3R 22703652..22703852 745..945 100 -> Plus
3R 22703909..22704022 946..1059 100 -> Plus
3R 22704093..22704340 1060..1307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:56:38 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22702007..22702290 1..284 99 -> Plus
3R 22702919..22703039 285..405 100 -> Plus
3R 22703254..22703592 406..744 100 -> Plus
3R 22703652..22703852 745..945 100 -> Plus
3R 22703909..22704022 946..1059 100 -> Plus
3R 22704093..22704340 1060..1307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:56:38 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22702007..22702290 1..284 99 -> Plus
3R 22702919..22703039 285..405 100 -> Plus
3R 22703254..22703592 406..744 100 -> Plus
3R 22703652..22703852 745..945 100 -> Plus
3R 22703909..22704022 946..1059 100 -> Plus
3R 22704093..22704340 1060..1307 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:53:20 Download gff for FI18835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18529815..18530062 1060..1307 99   Plus
arm_3R 18527729..18528012 1..284 99 -> Plus
arm_3R 18528641..18528761 285..405 100 -> Plus
arm_3R 18528976..18529314 406..744 100 -> Plus
arm_3R 18529374..18529574 745..945 100 -> Plus
arm_3R 18529631..18529744 946..1059 100 -> Plus

FI18835.pep Sequence

Translation from 291 to 1178

> FI18835.pep
MSEPAAQQQQSQNGKERSKSTEEKEVPREPALVLKDIDIKTELESLVKLL
DGKIYKEEEVAMEELHQYLIEDDGSWALGDNFLIFVQRVLRDNQAFSPDT
RIHLIRTLAYAALKDDVIIILHQDRRDHTLMNYAQDIDKQTPEEQQAWAM
FMCNLFENLGPSEWLLYISEWEYNGQTISNIRVTTKVAVHCILSNCPQLK
NIGSMILYNIAIKEVKTVVFDDIAVELAMAILQFFQSSPNEDQIFRTLRA
LVRFLEVSQDVPMIIQMIGPHPKQFAGKSERVDELIKIISRKVPA*

FI18835.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18308-PA 295 GF18308-PA 1..295 1..295 1506 95.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11161-PA 295 GG11161-PA 1..295 1..295 1567 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19084-PA 295 GH19084-PA 1..295 1..295 1465 92.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6972-PA 295 CG6972-PA 1..295 1..295 1505 100 Plus
CG6972-PB 296 CG6972-PB 1..296 1..295 1493 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23227-PA 295 GI23227-PA 1..295 1..295 1482 93.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23761-PA 295 GL23761-PA 1..295 1..295 1469 94.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19995-PA 295 GA19995-PA 1..295 1..295 1469 94.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26461-PA 272 GM26461-PA 1..272 1..295 1406 91.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24878-PA 266 GD24878-PA 1..257 1..257 1367 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22888-PA 295 GJ22888-PA 1..295 1..295 1474 93.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11467-PA 299 GK11467-PA 1..299 1..295 1402 89.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10327-PA 295 GE10327-PA 1..295 1..295 1560 99 Plus

FI18835.hyp Sequence

Translation from 291 to 1178

> FI18835.hyp
MSEPAAQQQQSQNGKERSKSTEEKEVPREPALVLKDIDIKTELESLVKLL
DGKIYKEEEVAMEELHQYLIEDDGSWALGDNFLIFVQRVLRDNQAFSPDT
RIHLIRTLAYAALKDDVIIILHQDRRDHTLMNYAQDIDKQTPEEQQAWAM
FMCNLFENLGPSEWLLYISEWEYNGQTISNIRVTTKVAVHCILSNCPQLK
NIGSMILYNIAIKEVKTVVFDDIAVELAMAILQFFQSSPNEDQIFRTLRA
LVRFLEVSQDVPMIIQMIGPHPKQFAGKSERVDELIKIISRKVPA*

FI18835.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6972-PA 295 CG6972-PA 1..295 1..295 1505 100 Plus