Clone FI18837 Report

Search the DGRC for FI18837

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:188
Well:37
Vector:pFlc-1
Associated Gene/TranscriptUGP-RE
Protein status:FI18837.pep: gold
Sequenced Size:2353

Clone Sequence Records

FI18837.complete Sequence

2353 bp assembled on 2012-02-16

GenBank Submission: BT133238.1

> FI18837.complete
GATTTTCAATTGCACACTCGACCGGAGAGCTTCGTTTTGGCGTCAATCTT
CTCTCTCGTTCTTTCGTTCCTAACGCGAGTGCATAGCCAAACACTAGAAA
AGTTGAGATTCTCACTGTGAGATATTGTTATATAGTGCTCCATAGTTCAC
AATGCCCTCCGGTATAAGACCCATCGATGTTCTGCTGGAACGTGCCGGTG
TGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTG
ACCAAACGGGATGCACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCT
GGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTC
GTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTG
GACTGGAACAAGATTCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTC
GAATCTTAAGTCGCCCAAGAACGAGCAGATCCGCAACATGTTGGATAAAT
TGGTGGTCATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCAT
GGTCCCAAGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCT
GACCGTGCAGCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTC
CGCTGGTACTGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATC
GTGCGCAAGTACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAG
CTGCTTCCCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACT
TTGATGTCGAAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGAC
TTCTACGATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGA
GGGCCGCGAGTATTGTTTCTTGTCCAACATCGATAACCTGGGCGCCACCG
TCGATCTGAACATCCTCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACT
CCAGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAA
GGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTG
CTCAAGTGCCACCAGAGCATGTGGATGACTTTAAGTCGGTTAAGACCTTC
AAGTTCTTTAACACCAACAACATTTGGGCCAACCTGGCAGCCATTGATCG
CGTTTTGCGTGAGCGTACCTTAAACATGGAAATTATTGTGAACAACAAGA
CGCTGGAGAACGGAACCCGTGTCATTCAGCTGGAGACTGCTGTGGGTGCG
GCCATGAAGTGCTTTGATGGCGCCATCGGCATCAATGTGCCGCGTTCCCG
TTTCTTGCCCGTGAAGAAATCTTCAGATCTGCTGCTGGTCATGTCAAATT
TATATACGCTTAAGAACGGCAGCCTGGTAATGTCGCCACAGCGAATGTTC
CCTACCACGCCGCTCGTCAAGCTGGGAGAGAACCACTTCTCGAAGGTCAA
GGAGTTCCTGGGTCGCTTTGCCAACATCCCGGACATCATTGAGCTGGATC
ACTTAACCGTGAGCGGAGATGTGACTTTCGGTCGTGGCGTTTCTTTGCGC
GGCACTGTGATCATCATTGCTAACCATGGCGATCGTATCGATATCCCAGC
TGGAGCCATTCTGGAGAACAAGATTGTATCTGGCAATATGCGCATCTTGG
ACCACTAAATCAAATCCTGTACAATTGGATATCGTCTCACTAACTGTAGT
CTAATTGTCTAAGTTTTATGTAGTAGCCATGTTCGCGTTTCAAATTTCCA
ATAACGAATTTCATTTAGCCAATTGTTGTAAGCACAAAGTGTGTCATCTG
TATATATCGTTAAGTAGAAATCAGTCAGGGTTTTTAATCAAAATCGAATT
GCAATATGTTTTCAAAAATGTTAGTTGTAGTCGTTCAAATGAGATATAAA
AGATAGCAGCTGTTGAAACTCAATAAAGGCATGTTTATTTCTATAAATAC
GAAGGAGATTGTCACCTATTGGATGTGAGATATTTGTGATGCTTAACATT
AGGTCTTAAATTAATATCACTTTGAAAAATGGCACAGGAATGGCACTAGC
CAAGTTTCATTCCCCTTGCTTTCAGTTTTCTATGACTTTTCTAAATCGTC
AATTAGACTATAGTTCTTGCTTATATGACCAAGTTTTATGCCCTGTTTGA
TTAGTTCTAATGCTATCTTTTTATTGCTACTCGATGGACCAATAAAGGCC
ACGACTAGTTCATCTGCATCTTTTGGAGGTTCACAGCTGTGATCCCAACC
TCTGGCCTCGTAGATGTTTTCGTCCCCAGCCGCAACGAAAAAAAAAAAAA
AAA

FI18837.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9343043..9343779 2337..1601 3655 99.7 Minus
chr3L 24539361 chr3L 9343846..9344258 1601..1189 2035 99.5 Minus
chr3L 24539361 chr3L 9344811..9345159 825..477 1745 100 Minus
chr3L 24539361 chr3L 9344530..9344756 1052..826 1135 100 Minus
chr3L 24539361 chr3L 9349497..9349696 201..2 1000 100 Minus
chr3L 24539361 chr3L 9345817..9346003 386..200 905 98.9 Minus
chr3L 24539361 chr3L 9344334..9344474 1190..1050 705 100 Minus
chr3L 24539361 chr3L 9345667..9345760 478..385 470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9351111..9351850 2340..1601 3700 100 Minus
3L 28110227 3L 9351917..9352329 1601..1189 2050 99.8 Minus
3L 28110227 3L 9352882..9353230 825..477 1745 100 Minus
3L 28110227 3L 9352601..9352827 1052..826 1135 100 Minus
3L 28110227 3L 9357581..9357780 201..2 1000 100 Minus
3L 28110227 3L 9353888..9354074 386..200 935 100 Minus
3L 28110227 3L 9352405..9352545 1190..1050 705 100 Minus
3L 28110227 3L 9353738..9353831 478..385 470 100 Minus
Blast to na_te.dros performed 2019-03-15 13:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1293..1366 1832..1762 118 67.6 Minus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 4919..4970 1950..1899 116 69.2 Minus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 50..101 1950..1899 116 69.2 Minus

FI18837.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:20:07 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9343043..9343779 1601..2337 99 <- Minus
chr3L 9343847..9344256 1191..1600 99 <- Minus
chr3L 9344334..9344472 1052..1190 100 <- Minus
chr3L 9344531..9344756 826..1051 100 <- Minus
chr3L 9344811..9345157 479..825 100 <- Minus
chr3L 9345667..9345758 387..478 100 <- Minus
chr3L 9345817..9346003 200..386 98 <- Minus
chr3L 9349499..9349696 1..199 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-16 15:26:05 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RE 1..1557 152..1708 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:10:31 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RE 1..1557 152..1708 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:27:28 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RE 1..1557 152..1708 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-16 15:26:05 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RE 111..2447 1..2337 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:10:31 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RE 103..2439 1..2337 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:27:28 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RE 103..2439 1..2337 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:07 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9351114..9351850 1601..2337 100 <- Minus
3L 9351918..9352327 1191..1600 99 <- Minus
3L 9352405..9352543 1052..1190 100 <- Minus
3L 9352602..9352827 826..1051 100 <- Minus
3L 9352882..9353228 479..825 100 <- Minus
3L 9353738..9353829 387..478 100 <- Minus
3L 9353888..9354074 200..386 100 <- Minus
3L 9357583..9357780 1..199 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:07 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9351114..9351850 1601..2337 100 <- Minus
3L 9351918..9352327 1191..1600 99 <- Minus
3L 9352405..9352543 1052..1190 100 <- Minus
3L 9352602..9352827 826..1051 100 <- Minus
3L 9352882..9353228 479..825 100 <- Minus
3L 9353738..9353829 387..478 100 <- Minus
3L 9353888..9354074 200..386 100 <- Minus
3L 9357583..9357780 1..199 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:07 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9351114..9351850 1601..2337 100 <- Minus
3L 9351918..9352327 1191..1600 99 <- Minus
3L 9352405..9352543 1052..1190 100 <- Minus
3L 9352602..9352827 826..1051 100 <- Minus
3L 9352882..9353228 479..825 100 <- Minus
3L 9353738..9353829 387..478 100 <- Minus
3L 9353888..9354074 200..386 100 <- Minus
3L 9357583..9357780 1..199 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:10:31 Download gff for FI18837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9346988..9347174 200..386 100 <- Minus
arm_3L 9350683..9350880 1..199 99   Minus
arm_3L 9344214..9344950 1601..2337 100 <- Minus
arm_3L 9345018..9345427 1191..1600 99 <- Minus
arm_3L 9345505..9345643 1052..1190 100 <- Minus
arm_3L 9345702..9345927 826..1051 100 <- Minus
arm_3L 9345982..9346328 479..825 100 <- Minus
arm_3L 9346838..9346929 387..478 100 <- Minus

FI18837.hyp Sequence

Translation from 151 to 1707

> FI18837.hyp
MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL
ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS
NLKSPKNEQIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDL
TVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQS
CFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEE
GREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVK
GGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDR
VLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSR
FLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVK
EFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPA
GAILENKIVSGNMRILDH*

FI18837.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-PE 518 CG4347-PE 1..518 1..518 2675 100 Plus
UGP-PA 520 CG4347-PA 1..520 1..518 2662 99.6 Plus
UGP-PD 511 CG4347-PD 8..511 15..518 2597 99.8 Plus
UGP-PC 513 CG4347-PC 8..513 15..518 2584 99.4 Plus

FI18837.pep Sequence

Translation from 151 to 1707

> FI18837.pep
MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL
ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS
NLKSPKNEQIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDL
TVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQS
CFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEE
GREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVK
GGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDR
VLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSR
FLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVK
EFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPA
GAILENKIVSGNMRILDH*

FI18837.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23744-PA 529 GF23744-PA 10..529 1..518 2687 97.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14051-PA 513 GG14051-PA 8..513 15..518 2646 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16268-PA 511 GH16268-PA 6..511 13..518 2590 95.7 Plus
Dgri\GH22478-PA 493 GH22478-PA 1..493 1..518 2486 90.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-PE 518 CG4347-PE 1..518 1..518 2675 100 Plus
UGP-PA 520 CG4347-PA 1..520 1..518 2662 99.6 Plus
UGP-PD 511 CG4347-PD 8..511 15..518 2597 99.8 Plus
UGP-PC 513 CG4347-PC 8..513 15..518 2584 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13203-PA 520 GI13203-PA 1..520 1..518 2660 96.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18418-PA 513 GL18418-PA 10..513 17..518 2583 96.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18125-PA 513 GA18125-PA 10..513 17..518 2583 96.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24885-PA 513 GM24885-PA 8..513 15..518 2664 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12937-PA 531 GD12937-PA 12..531 1..518 2743 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11980-PA 529 GJ11980-PA 10..529 1..518 2672 96.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24300-PA 513 GK24300-PA 6..513 13..518 2575 94.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21254-PA 520 GE21254-PA 1..520 1..518 2740 99.4 Plus