Clone FI18838 Report

Search the DGRC for FI18838

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:188
Well:38
Vector:pFlc-1
Associated Gene/TranscriptSpat-RA
Protein status:FI18838.pep: gold
Sequenced Size:1426

Clone Sequence Records

FI18838.complete Sequence

1426 bp assembled on 2012-02-28

GenBank Submission: BT133279.1

> FI18838.complete
GCGAGTCCGATCTTGGCCAGCCACCGAGAGAGACAGCCCATAAAAACCAA
CTCCCATCACCAAACAGTAGTAACACCCATTCTACCTGGCACAGCGGATT
AGAGAGCAGAAGGCGATAAGGCAGTCGTAAACACAGAGATCTGATTACGT
AAATAGGGAACAAAGACCATGGAGGTACCACCGCCACTTGTACTCAAGCG
ACCGCTCTATGTGCCCAGCAAGACGTTGATGGGGCCCGGACCCTCCAACT
GTTCCCATCGCGTCCTGGAGGCCATGAGCAATCCGGTGTTGGGTCACATG
CATCCCGAATGCCTGCAGATCATGGACGAGGTGAAGGAGGGCATTAAGTA
CATCTTTCAGACACTCAACGATGCCACCATGTGCATCAGCGGCGCCGGCC
ACTCGGGCATGGAGGCCGCTCTGTGCAATCTGATCGAGGATGGCGATGTG
GTGCTCATGGGCATCACGGGCGTCTGGGGTCATCGGGCCGGGGATATGGC
CCGTCGCTATGGTGCCGAAGTTCACTACGTGGAGGCGAGTTTCGGCCGGG
CACTGTCGCACGAAGAGATCACATTCGCCTTCGAGGCGCATCGACCCAAG
GTCTTCTTCATTGCCCAGGGTGACTCCTCGACTGGCATTATCCAGCAGAA
TATCCGTGAGCTGGGCGAACTGTGCCGCAAGTACGATTGCTTCCTCATCG
TCGATACGGTGGCTTCGCTCGGCGGCACCGAATTCCTCATGGACGAGTGG
AAGGTGGATGTGGCGTACACGGGTTCGCAGAAATCGCTCGGTGGTCCCGC
CGGTCTAACGCCCATTTCGTTCAGCAAGCGTGCTTTGACCCGCATCCGAA
AGCGAAAGACCAAGCCGAAGGTTTACTACTTCGATATCCTGCTGATTGGT
CAGTACTGGGGTTGCTATGGCACACCCCGCATCTACCACCACACCATATC
CTCCACCCTGCTCTACGGATTGCGTGAGGCACTGGCCCACTTTTGTGCCG
TCGGCCTCAAGGCGGTGGTGCGTCGCCATCAGGAGTGCTCCAAGCGACTG
CAGTTGGGCATCGAGGAGCTGGGTCTTGAGATGTTTGTGTCGCGCGAGGA
GGAGCGTTTGCCCACGGTGAACACGATTAAGGTGCCCTTCGGCGTCGACT
GGAAAAAGGTGGCCGAGTACGCCATGCGCAAGTACAGCGTTGAGATTAGC
GGTGGTCTGGGTCCCACGGTGGAGCACGTCTTCCGTATCGGTTTAATGGG
CGAAAACGCTACCGTGGAGCGCGTGGACATGGTGCTCAGCATCCTGAACG
AGGCCATTCAGAGCAGCAAGCTGGGGATCAAGACGGATCTATCGAAAATC
TAACAAATCGTTGCCCTGCTCCTATCACTAGTTATAAAATAAAAACAAAT
ATGGAAAACCAAAAAAAAAAAAAAAA

FI18838.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6421820..6422689 314..1183 4140 98.4 Plus
chrX 22417052 chrX 6421209..6421523 4..318 1575 100 Plus
chrX 22417052 chrX 6422757..6422984 1182..1409 1080 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6529561..6530431 313..1183 4355 100 Plus
X 23542271 X 6528951..6529265 4..318 1575 100 Plus
X 23542271 X 6530498..6530729 1182..1413 1145 99.6 Plus
Blast to na_te.dros performed on 2019-03-15 13:31:28 has no hits.

FI18838.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:32:39 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6421207..6421523 1..318 99 -> Plus
chrX 6421825..6422687 319..1181 98 -> Plus
chrX 6422757..6422984 1182..1410 97   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-28 11:05:37 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
Spat-RA 1..1185 169..1353 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:12:44 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
Spat-RA 1..1185 169..1353 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:31:31 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
Spat-RA 1..1185 169..1353 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-28 11:05:36 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
Spat-RA 2..1409 1..1410 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:12:44 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
Spat-RA 2..1409 1..1410 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:31:31 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
Spat-RA 2..1409 1..1410 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:39 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
X 6528949..6529265 1..318 99 -> Plus
X 6529567..6530429 319..1181 100 -> Plus
X 6530498..6530725 1182..1410 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:39 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
X 6528949..6529265 1..318 99 -> Plus
X 6529567..6530429 319..1181 100 -> Plus
X 6530498..6530725 1182..1410 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:39 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
X 6528949..6529265 1..318 99 -> Plus
X 6529567..6530429 319..1181 100 -> Plus
X 6530498..6530725 1182..1410 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:12:44 Download gff for FI18838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6422982..6423298 1..318 99 -> Plus
arm_X 6423600..6424462 319..1181 100 -> Plus
arm_X 6424531..6424758 1182..1410 99   Plus

FI18838.pep Sequence

Translation from 168 to 1352

> FI18838.pep
MEVPPPLVLKRPLYVPSKTLMGPGPSNCSHRVLEAMSNPVLGHMHPECLQ
IMDEVKEGIKYIFQTLNDATMCISGAGHSGMEAALCNLIEDGDVVLMGIT
GVWGHRAGDMARRYGAEVHYVEASFGRALSHEEITFAFEAHRPKVFFIAQ
GDSSTGIIQQNIRELGELCRKYDCFLIVDTVASLGGTEFLMDEWKVDVAY
TGSQKSLGGPAGLTPISFSKRALTRIRKRKTKPKVYYFDILLIGQYWGCY
GTPRIYHHTISSTLLYGLREALAHFCAVGLKAVVRRHQECSKRLQLGIEE
LGLEMFVSREEERLPTVNTIKVPFGVDWKKVAEYAMRKYSVEISGGLGPT
VEHVFRIGLMGENATVERVDMVLSILNEAIQSSKLGIKTDLSKI*

FI18838.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22261-PA 395 GF22261-PA 1..395 1..394 2011 94.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19592-PA 394 GG19592-PA 1..394 1..394 2094 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12684-PA 395 GH12684-PA 1..395 1..394 1847 84.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Spat-PA 394 CG3926-PA 1..394 1..394 2059 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16356-PA 395 GI16356-PA 1..395 1..394 1854 85.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14301-PA 395 GL14301-PA 1..395 1..394 1974 91.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17780-PA 395 GA17780-PA 1..395 1..394 1974 91.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12493-PA 374 GM12493-PA 1..374 21..394 1988 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16801-PA 394 GD16801-PA 1..394 1..394 2099 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16726-PA 395 GJ16726-PA 1..395 1..394 1870 87.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20138-PA 392 GK20138-PA 1..392 1..394 1872 86.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Spat-PA 394 GE16753-PA 1..394 1..394 2093 99.2 Plus

FI18838.hyp Sequence

Translation from 168 to 1352

> FI18838.hyp
MEVPPPLVLKRPLYVPSKTLMGPGPSNCSHRVLEAMSNPVLGHMHPECLQ
IMDEVKEGIKYIFQTLNDATMCISGAGHSGMEAALCNLIEDGDVVLMGIT
GVWGHRAGDMARRYGAEVHYVEASFGRALSHEEITFAFEAHRPKVFFIAQ
GDSSTGIIQQNIRELGELCRKYDCFLIVDTVASLGGTEFLMDEWKVDVAY
TGSQKSLGGPAGLTPISFSKRALTRIRKRKTKPKVYYFDILLIGQYWGCY
GTPRIYHHTISSTLLYGLREALAHFCAVGLKAVVRRHQECSKRLQLGIEE
LGLEMFVSREEERLPTVNTIKVPFGVDWKKVAEYAMRKYSVEISGGLGPT
VEHVFRIGLMGENATVERVDMVLSILNEAIQSSKLGIKTDLSKI*

FI18838.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Spat-PA 394 CG3926-PA 1..394 1..394 2059 100 Plus