Clone FI18839 Report

Search the DGRC for FI18839

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:188
Well:39
Vector:pFlc-1
Associated Gene/Transcripttrio-RE
Protein status:FI18839.pep: gold
Sequenced Size:2187

Clone Sequence Records

FI18839.complete Sequence

2187 bp assembled on 2012-02-16

GenBank Submission: BT133236.1

> FI18839.complete
GAGTCGCTTTTCGAGATTCTCGGGCTTCGCATTGCCAAAATGCGTCGTCG
TCGCAAAGTCCTTATAAAGGCCATATTTTCGAAAGACAGTTCGCCATAAA
CGGTGGCCGAAAAGCAAAACAGCAAAACGTTTCCACTGTGCGCCGGGAAT
TTTAAGCAACACGTGCCATGAGCTGTTTCTTCCGCTTATTTGCCAGCCCC
GGCAAAATGGACGGCAATCCACTTTCGGAAATAGAAGAAATTGTCAAGAC
GACAACGGAGCAGCACGAGTCCAACAGTCGCGTGGATGGAGGCGGAGGTG
TGGAAAATGCCAGCACCAACGGCCATGGTCGATCCCACGACAACAATGAT
GAGAGCCACACCGCTGTGTCTGACAAGGCTGCAGCCCTCAAAAAGCGGCA
ATGCGTCTTTGCGGAGCTGATGTCCACGGAGGAGGCATATGTACAGGATC
TGCATGAGATCGTCAATGGTTACATGACAGAGATTAACAACACGAACAGT
GATATACCCATGCCTGAGGACCTGAAGGGTGGTAAAATGAAGTTGGTCTT
CAACAATATTAAAGACATCTACGAGTGGCACAGGGACTTCTTCCTGAGAG
CCCTGCGCAACTGCCAAAAATCGCCGGCGGACCTGGGTCCGCTCATCAAG
CGGTCAGCCACCAAGTTCGCTCTGTACTACACCTATTGCAGCAACAAACC
GCTGTCCGAATACATAGTCAGTGCCCATTATCAGTATTTCGATAGCATAC
GTCAGAAGCTGGGACATCGTCTGGATCTGAGTAACTTGATCATCAAGCCG
GTGCAGCGAATCACTAAATACGAGCTACTCATCAAGGAGATCATCAAGGC
CACCGAGGGAGCCGGGCTTTACAAGGAGGTGCCCATGCTGCAGGAGGCCT
ACCAACAGATGAAGGTCGTCGTCAAGACGGTCAACGATATGATGGTGGTG
CTGCGCAGCTTGCAGGACTTCGATGGGGAGATAACCGCCCAAGGCAGCCT
GTTGATGCAGGGACCCATGAACTGCGTGGTGGATGCGGCACAGAAGCACC
GCGAGCTTCAGGTGTTCCTCTTCCAGCAGATCATCATCTTTGCGGATATT
GAGAAGACCAAGAACCAGTATGCCAGTCCCATATTCAAATACAGATCGCA
CATACAGCTCAATCACATGCAAATGAAGGAACTGGGCGACTGCCGCTTTC
AAATAAGGTCGACTGACCCCAAGATCCCAGAGATGACGATCATCTGCCAG
GCGGCGTCGCAGGAGAACTACGCGGGGTGGCGCGATATGCTAAACAAGAT
ACTGCAGCAGCAGAACGACCTGATCTTCATGCTCTCCAATCCCCTGTCAA
CCAAAAACAAATGAACGCCGTTGGCGAAAGAATTCCAAATGATAAGGCAG
GAAGCTTAAAGGCAAGCAAGAACAACAAACGAAAGTATGAGAAAATGATA
TTCAAATGTGTTTTGGGCAAAGGTGTTCCGCCACCGAAGTGAGCATTAGC
CTCGCACTTGTTTTTCCGTCTGTGCGTTTGTTTACGGATAGTTTTGCTCA
CTCACACCCAGAAACACTCGCATACTCAATCCTAATTTGTATGTAACTTG
TAATTGTAATTTATTTATTCGTCATCAATTGCGTTTCCGTTCAGTCCACC
TTTAGATTTTAGTTGGGCCGCCTTTCTGTTCGTATAGTTTTTGTTTTCTA
TTCCGGATTTGTGTGTATGAAACGCAAAGTATTATATGCTCAAGATTACC
TTTGACATTGTGTGCATTTTTAACTTATTTAGACTCCTTTGCTCTTAGTT
TTACTTTTCCGAGTCTGATTTACTAACGATCCGCAGCCGAGAACTACTCA
GAATCAAAAGCAATTTACATTTCGTTTTCGTTTCGTACTCGTTTTATTCG
CATTGAACGCAGAGAGTAAGAGTATAACTATTCTAGCCTTAGTTTGGTAC
ATAGTTTTAGTTAAACTGCTAAATGTTAATCATAGTTTATACTTGAGTTA
CTGGATTTGCTTTGCAAAACTAAAGCAGAGATTTGTGTAATGGCACTCGT
TCGAGTGTGACAACTTCGTGAAATAATTTAAGCTTAACTTTAGTTTATGA
ATGCAATGCAAAGCTTATTTGTACTTTATAATTTACAAATAAAATATGTA
AGCTTTAAACGTAATCAAAACCAAAAAAAAAAAAAAA

FI18839.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 996979..997996 2172..1155 4955 99.1 Minus
chr3L 24539361 chr3L 998053..998433 1157..777 1830 98.7 Minus
chr3L 24539361 chr3L 1000075..1000265 192..2 955 100 Minus
chr3L 24539361 chr3L 998526..998715 776..587 950 100 Minus
chr3L 24539361 chr3L 998959..999080 473..352 595 99.2 Minus
chr3L 24539361 chr3L 998781..998898 586..469 590 100 Minus
chr3L 24539361 chr3L 999145..999241 353..257 485 100 Minus
chr3L 24539361 chr3L 999314..999380 258..192 335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 997272..998294 2177..1155 5100 99.9 Minus
3L 28110227 3L 998351..998731 1157..777 1905 100 Minus
3L 28110227 3L 1000377..1000567 192..2 955 100 Minus
3L 28110227 3L 998824..999013 776..587 950 100 Minus
3L 28110227 3L 999256..999377 473..352 595 99.2 Minus
3L 28110227 3L 999079..999196 586..469 590 100 Minus
3L 28110227 3L 999447..999543 353..257 485 100 Minus
3L 28110227 3L 999616..999682 258..192 335 100 Minus
Blast to na_te.dros performed 2019-03-15 13:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6162..6381 1805..1577 130 56.3 Minus

FI18839.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:20:23 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 998053..998433 777..1157 98 <- Minus
chr3L 998526..998715 587..776 100 <- Minus
chr3L 998781..998897 470..586 100 <- Minus
chr3L 998963..999078 354..469 100 <- Minus
chr3L 999145..999240 258..353 100 <- Minus
chr3L 999315..999380 192..257 100 <- Minus
chr3L 996979..997993 1158..2172 99 <- Minus
chr3L 1000076..1000265 1..191 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-16 17:58:38 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
trio-RE 1..1197 168..1364 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:10:50 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
trio-RE 1..1197 168..1364 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:27:57 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
trio-RE 1..1197 168..1364 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-16 17:58:38 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
trio-RE 1..2171 2..2172 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:10:50 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
trio-RE 1..2171 2..2172 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:27:57 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
trio-RE 1..2171 2..2172 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:23 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 997277..998291 1158..2172 100 <- Minus
3L 998351..998731 777..1157 100 <- Minus
3L 998824..999013 587..776 100 <- Minus
3L 999079..999195 470..586 100 <- Minus
3L 999260..999375 354..469 100 <- Minus
3L 999447..999542 258..353 100 <- Minus
3L 999617..999682 192..257 100 <- Minus
3L 1000378..1000567 1..191 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:23 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 997277..998291 1158..2172 100 <- Minus
3L 998351..998731 777..1157 100 <- Minus
3L 998824..999013 587..776 100 <- Minus
3L 999079..999195 470..586 100 <- Minus
3L 999260..999375 354..469 100 <- Minus
3L 999447..999542 258..353 100 <- Minus
3L 999617..999682 192..257 100 <- Minus
3L 1000378..1000567 1..191 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:23 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 997277..998291 1158..2172 100 <- Minus
3L 998351..998731 777..1157 100 <- Minus
3L 998824..999013 587..776 100 <- Minus
3L 999079..999195 470..586 100 <- Minus
3L 999260..999375 354..469 100 <- Minus
3L 999447..999542 258..353 100 <- Minus
3L 999617..999682 192..257 100 <- Minus
3L 1000378..1000567 1..191 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:10:50 Download gff for FI18839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 997277..998291 1158..2172 100 <- Minus
arm_3L 998351..998731 777..1157 100 <- Minus
arm_3L 998824..999013 587..776 100 <- Minus
arm_3L 999079..999195 470..586 100 <- Minus
arm_3L 999260..999375 354..469 100 <- Minus
arm_3L 999447..999542 258..353 100 <- Minus
arm_3L 999617..999682 192..257 100 <- Minus
arm_3L 1000378..1000567 1..191 99   Minus

FI18839.hyp Sequence

Translation from 167 to 1363

> FI18839.hyp
MSCFFRLFASPGKMDGNPLSEIEEIVKTTTEQHESNSRVDGGGGVENAST
NGHGRSHDNNDESHTAVSDKAAALKKRQCVFAELMSTEEAYVQDLHEIVN
GYMTEINNTNSDIPMPEDLKGGKMKLVFNNIKDIYEWHRDFFLRALRNCQ
KSPADLGPLIKRSATKFALYYTYCSNKPLSEYIVSAHYQYFDSIRQKLGH
RLDLSNLIIKPVQRITKYELLIKEIIKATEGAGLYKEVPMLQEAYQQMKV
VVKTVNDMMVVLRSLQDFDGEITAQGSLLMQGPMNCVVDAAQKHRELQVF
LFQQIIIFADIEKTKNQYASPIFKYRSHIQLNHMQMKELGDCRFQIRSTD
PKIPEMTIICQAASQENYAGWRDMLNKILQQQNDLIFMLSNPLSTKNK*

FI18839.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
trio-PE 398 CG18214-PE 1..398 1..398 2070 100 Plus
trio-PF 658 CG18214-PF 269..658 9..398 2025 100 Plus
trio-PB 658 CG18214-PB 269..658 9..398 2025 100 Plus
trio-PD 804 CG18214-PD 415..804 9..398 2025 100 Plus
trio-PC 2263 CG18214-PC 1874..2263 9..398 2025 100 Plus

FI18839.pep Sequence

Translation from 167 to 1363

> FI18839.pep
MSCFFRLFASPGKMDGNPLSEIEEIVKTTTEQHESNSRVDGGGGVENAST
NGHGRSHDNNDESHTAVSDKAAALKKRQCVFAELMSTEEAYVQDLHEIVN
GYMTEINNTNSDIPMPEDLKGGKMKLVFNNIKDIYEWHRDFFLRALRNCQ
KSPADLGPLIKRSATKFALYYTYCSNKPLSEYIVSAHYQYFDSIRQKLGH
RLDLSNLIIKPVQRITKYELLIKEIIKATEGAGLYKEVPMLQEAYQQMKV
VVKTVNDMMVVLRSLQDFDGEITAQGSLLMQGPMNCVVDAAQKHRELQVF
LFQQIIIFADIEKTKNQYASPIFKYRSHIQLNHMQMKELGDCRFQIRSTD
PKIPEMTIICQAASQENYAGWRDMLNKILQQQNDLIFMLSNPLSTKNK*

FI18839.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10082-PA 2260 GF10082-PA 1871..2260 8..398 1835 86 Plus
Dana\GF13845-PA 485 GF13845-PA 59..376 69..382 336 30.4 Plus
Dana\GF10654-PA 1850 GF10654-PA 1302..1607 80..382 335 30 Plus
Dana\GF10082-PA 2260 GF10082-PA 1279..1585 69..381 313 29.3 Plus
Dana\GF12043-PA 4212 GF12043-PA 86..322 76..317 184 27.5 Plus
Dana\GF11438-PA 683 GF11438-PA 307..562 58..316 180 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14630-PA 815 GG14630-PA 418..815 1..398 2174 99.2 Plus
Dere\GG14443-PA 1898 GG14443-PA 1349..1654 80..382 341 30 Plus
Dere\GG14629-PA 1642 GG14629-PA 1266..1582 59..381 323 29.6 Plus
Dere\GG10861-PA 1045 GG10861-PA 608..871 76..338 285 30.5 Plus
Dere\GG19967-PA 4199 GG19967-PA 86..341 76..337 195 27.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15671-PA 2316 GH15671-PA 1919..2315 8..394 1254 62.7 Plus
Dgri\GH15671-PA 2316 GH15671-PA 1306..1612 69..381 343 30.8 Plus
Dgri\GH14899-PA 1957 GH14899-PA 1378..1716 50..382 342 29.7 Plus
Dgri\GH21435-PA 1540 GH21435-PA 1082..1339 96..346 303 29.7 Plus
Dgri\GH21704-PA 4234 GH21704-PA 94..384 76..371 201 24.6 Plus
Dgri\GH21609-PA 1483 GH21609-PA 526..720 49..258 190 27.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
trio-PE 398 CG18214-PE 1..398 1..398 2070 100 Plus
trio-PF 658 CG18214-PF 269..658 9..398 2025 100 Plus
trio-PB 658 CG18214-PB 269..658 9..398 2025 100 Plus
trio-PD 804 CG18214-PD 415..804 9..398 2025 100 Plus
trio-PC 2263 CG18214-PC 1874..2263 9..398 2025 100 Plus
trio-PA 2263 CG18214-PA 1874..2263 9..398 2025 100 Plus
trio-PC 2263 CG18214-PC 1241..1582 34..381 352 27.6 Plus
trio-PA 2263 CG18214-PA 1241..1582 34..381 352 27.6 Plus
Pura-PC 872 CG33275-PC 321..626 80..382 349 29.7 Plus
Pura-PB 1428 CG33275-PB 877..1182 80..382 349 29.7 Plus
Pura-PD 1898 CG33275-PD 1347..1652 80..382 349 29.7 Plus
Pura-PA 1904 CG33275-PA 1353..1658 80..382 349 29.7 Plus
CG30440-PA 1057 CG30440-PA 618..892 76..346 326 30.9 Plus
Unc-89-PH 3903 CG33519-PH 86..341 76..337 201 26.4 Plus
Unc-89-PE 4193 CG33519-PE 86..341 76..337 201 26.4 Plus
Unc-89-PD 4194 CG33519-PD 87..342 76..337 201 26.4 Plus
Unc-89-PC 4218 CG33519-PC 86..341 76..337 201 26.4 Plus
GEFmeso-PF 878 CG30115-PF 481..794 13..338 196 21.8 Plus
GEFmeso-PG 1237 CG30115-PG 169..482 13..338 196 21.8 Plus
GEFmeso-PE 1549 CG30115-PE 481..794 13..338 196 21.8 Plus
CG30456-PD 592 CG30456-PD 199..471 49..316 189 25.7 Plus
CG30456-PB 682 CG30456-PB 289..561 49..316 189 25.7 Plus
CG30456-PC 443 CG30456-PC 87..322 80..316 185 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12715-PA 2277 GI12715-PA 1873..2276 8..394 1337 63.1 Plus
Dmoj\GI12875-PA 888 GI12875-PA 334..639 80..382 343 29.7 Plus
Dmoj\GI12715-PA 2277 GI12715-PA 1270..1576 69..381 326 29.9 Plus
Dmoj\GI20658-PA 1642 GI20658-PA 1174..1427 100..346 298 29.8 Plus
Dmoj\GI19581-PA 1614 GI19581-PA 576..803 76..308 183 26 Plus
Dmoj\GI18603-PA 579 GI18603-PA 223..455 80..312 177 24.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16680-PA 847 GL16680-PA 454..847 8..398 1923 89.6 Plus
Dper\GL26580-PA 912 GL26580-PA 350..655 80..382 342 30.4 Plus
Dper\GL11040-PA 1315 GL11040-PA 616..927 45..346 341 29.7 Plus
Dper\GL16679-PA 1688 GL16679-PA 1298..1604 69..381 317 29.3 Plus
Dper\GL10435-PA 4175 GL10435-PA 86..317 76..313 200 28.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28275-PA 2398 GA28275-PA 2005..2398 8..398 1926 89.6 Plus
Dpse\GA23678-PA 862 GA23678-PA 298..603 80..382 343 30.4 Plus
Dpse\GA15847-PA 1048 GA15847-PA 603..889 67..346 338 30.5 Plus
Dpse\GA28275-PA 2398 GA28275-PA 1225..1531 69..381 319 29.3 Plus
Dpse\GA24366-PA 4190 GA24366-PA 86..317 76..313 200 28.5 Plus
Dpse\GA15660-PB 1632 GA15660-PB 582..828 83..338 181 25.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14245-PA 812 GM14245-PA 415..812 1..398 2165 99 Plus
Dsec\GM14862-PA 1394 GM14862-PA 843..1148 80..382 341 30 Plus
Dsec\GM16509-PA 1038 GM16509-PA 618..892 76..346 306 31.2 Plus
Dsec\GM14244-PA 227 GM14244-PA 2..214 153..367 198 30.5 Plus
Dsec\GM15480-PA 4198 GM15480-PA 88..343 76..337 198 27.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13501-PA 812 GD13501-PA 415..812 1..398 2175 99.2 Plus
Dsim\GD24982-PA 2043 GD24982-PA 86..341 76..337 198 27.4 Plus
Dsim\GD11248-PA 956 GD11248-PA 592..835 75..316 174 26.1 Plus
Dsim\GD10359-PA 318 GD10359-PA 2..162 190..346 171 30.7 Plus
Dsim\GD17440-PA 523 GD17440-PA 11..300 45..309 152 24.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12704-PA 539 GJ12704-PA 139..538 8..394 1324 63.7 Plus
Dvir\GJ13016-PA 1670 GJ13016-PA 1097..1402 80..382 339 30 Plus
Dvir\GJ12702-PA 323 GJ12702-PA 2..281 82..367 304 31.6 Plus
Dvir\GJ20407-PA 1626 GJ20407-PA 1175..1413 115..346 293 30.4 Plus
Dvir\GJ21156-PA 1582 GJ21156-PA 521..763 61..308 190 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16864-PA 2277 GK16864-PA 1886..2273 8..393 1531 73.4 Plus
Dwil\GK17395-PA 1990 GK17395-PA 1414..1719 80..382 338 30 Plus
Dwil\GK16864-PA 2277 GK16864-PA 1277..1584 69..381 321 29.6 Plus
Dwil\GK10622-PA 1533 GK10622-PA 1063..1334 81..346 308 29.9 Plus
Dwil\GK21935-PA 4238 GK21935-PA 86..317 76..313 199 26.9 Plus
Dwil\GK19539-PA 1520 GK19539-PA 543..789 83..338 195 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20988-PA 815 GE20988-PA 418..815 1..398 2173 99.2 Plus
Dyak\GE21634-PA 1902 GE21634-PA 1351..1656 80..382 340 30 Plus
Dyak\GE20987-PA 1639 GE20987-PA 1266..1582 59..381 320 29.3 Plus
Dyak\GE11297-PA 994 GE11297-PA 554..826 67..338 297 30 Plus
Dyak\GE11499-PA 4224 GE11499-PA 86..341 76..337 194 26.3 Plus