Clone FI18858 Report

Search the DGRC for FI18858

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:188
Well:58
Vector:pFlc-1
Associated Gene/TranscriptCdsA-RA
Protein status:FI18858.pep: gold
Sequenced Size:2254

Clone Sequence Records

FI18858.complete Sequence

2254 bp assembled on 2012-04-06

GenBank Submission: BT133385.1

> FI18858.complete
ATGGAATCAATACATTGTGAATAGATCTGGCGAACATCGAATAATGGCCG
AAGTGCGACGCAGGAAGGGCGAGGATGAGCCACTGGAGGACACGGCCATC
TCCGGATCTGACGCAGCCAATAAGCGCAACTCCGCCGCCGACTCCTCGGA
CCATGTGGACTCCGAGGAAGAGAAGATTCCCGAGGAGAAGTTCGTCGACG
AACTGGCCAAGAATCTGCCGCAGGGAACCGACAAAACGCCCGAGATATTG
GACTCGGCCCTCAAGGATCTGCCGGATAGATGGAAGAACTGGGTGATTCG
CGGCATCTTCACATGGATTATGATCTGCGGCTTCGCATTGATCATCTATG
GTGGACCGCTGGCCTTGATGATCACGACGTTACTGGTGCAGGTGAAGTGC
TTCCAGGAGATCATCTCGATTGGCTACCAGGTTTATCGAATTCATGGCTT
GCCCTGGTTCCGAAGCCTTTCCTGGTATTTCCTGCTTACCTCAAATTACT
TCTTTTACGGAGAGAATCTGGTAGACTACTTTGGCGTTGTAATTAATCGG
GTGGAATATCTGAAGTTCCTGGTGACCTATCACCGGTTCCTTTCCTTCGC
CCTGTACATCATCGGGTTCGTTTGGTTCGTGCTCTCACTGGTGAAGAAGT
ATTACATCAAACAATTCAGCCTGTTTGCCTGGACCCATGTATCCCTGCTG
ATTGTCGTCACCCAGAGTTACCTCATCATACAGAATATATTTGAGGGGCT
CATTTGGTTCATCGTACCTGTTTCGATGATAGTGTGCAATGATGTCATGG
CGTACGTGTTCGGTTTCTTCTTTGGGCGCACTCCCCTCATCAAGCTCAGC
CCCAAGAAGACCTGGGAGGGCTTCATCGGGGGTGGCTTCGCCACCGTCCT
CTTTGGCATTCTGTTCTCGTATGTGCTGTGCAACTACCAGTACTTTATCT
GTCCCATCCAGTACTCGGAGGAACAGGGACGCATGACAATGTCCTGTGTG
CCAAGCTATTTGTTCACGCCCCAGGAATACAGCCTTAAATTGTTTGGCAT
TGGCAAGACTCTAAATCTTTACCCCTTTATCTGGCACTCGATCTCCCTGA
GCCTGTTTAGTTCCATTATTGGACCCTTTGGTGGCTTCTTTGCCTCTGGA
TTTAAGAGAGCTTTCAAAATTAAGGACTTTGGCGACATGATACCCGGACA
TGGCGGCATTATGGATCGTTTCGATTGTCAGTTTCTTATGGCGACCTTCG
TTAACGTTTATATATCCAGCTTCATCAGAACTCCGTCGCCGGCTAAGCTG
CTGACACAGATTTACAACCTTAAGCCAGATCAACAATACCAAATTTATCA
GTCCCTCAAGGACAACTTGGGCGACATGTTAACCTAAACTTGATCGGTTA
CCAGTAAGATTCGGACAAGACGTTTGCTGAGTCGTACGTTCTATATGTAA
TGCAGAAATTTCTATATATATACATTGATATATATCTGTAAGCAAACGGG
CCGGCAGTTTGAGCAGCCACATAAAATAAGTTAATTACGGGCATAATTTT
TGTTATGTTATTAGTCCTTAGTTAGATTTTGTTGCTACATTTTAGTTAAA
TTCTTAAGTTAGTTTTTATTTTATCTTGCATTAAGTTATTGCGATTGTTT
TATTTGGCAGAACTCTACACAGTGCAATCGTATTGTTAAGCGATTCCATT
AATTTTAATGCCCTCGTGACAAGGCGTCAAGGCAAGGCAAACAGAATAAC
TATGAATTTAATATCGACTATGTGTGTGTGCGTGTTGTTAGTGAATTTAA
TTACGATAACTATAGCTTAGAGATGATCAGGCAGACAACGCCAGAATCTG
GAGATTAGCATAATTAAAGCGCATTTTAGTTAAATACCTGAGGGACGAAA
TTATGAGATCAAGATACCAGGAAAACTCTTGCAATGCTGTAATTCTATAT
ATAATAGTGCAATATGCAGACGTTAAATAATTGATTTAACCATTTCAATA
TTTATTTATTTACTTTTATTCGGTCATACACTACGCCATGCATAGTGCAA
CATCCTCAACCCGTGAATCTTTCTCAAAAAGTACATAGATGATATATAAT
CGGTTACTTATAAATCCTGTTATACTGTACGGCATTTAAGAACGAAAATG
CAATTCGTCGGCGTTTTAAAGAACTAAATGTACAAAGATTTCAATATTAA
ATCTTACAGTCTCTATGTTAAATATATATAAAAATAACAAAAAAAAAAAA
AAAA

FI18858.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8122660..8123725 1173..2238 5270 99.6 Plus
chr3L 24539361 chr3L 8121892..8122381 553..1042 2390 99.2 Plus
chr3L 24539361 chr3L 8121654..8121832 376..554 895 100 Plus
chr3L 24539361 chr3L 8120259..8120412 3..156 770 100 Plus
chr3L 24539361 chr3L 8122465..8122598 1042..1175 670 100 Plus
chr3L 24539361 chr3L 8121121..8121249 151..279 630 99.2 Plus
chr3L 24539361 chr3L 8121491..8121589 278..376 495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8130619..8131687 1173..2241 5345 100 Plus
3L 28110227 3L 8129851..8130340 553..1042 2450 100 Plus
3L 28110227 3L 8129613..8129791 376..554 895 100 Plus
3L 28110227 3L 8128218..8128371 3..156 770 100 Plus
3L 28110227 3L 8130424..8130557 1042..1175 670 100 Plus
3L 28110227 3L 8129080..8129208 151..279 630 99.2 Plus
3L 28110227 3L 8129450..8129548 278..376 495 100 Plus
Blast to na_te.dros performed 2019-03-15 13:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 747..854 1654..1547 170 64.2 Minus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 680..773 1637..1544 135 65.6 Minus
Penelope 804 Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). 235..328 1637..1544 135 65.6 Minus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1016..1087 1961..2030 129 68.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6811..6877 1656..1590 119 64.2 Minus

FI18858.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:33:07 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8120256..8120410 1..154 99 -> Plus
chr3L 8121125..8121249 155..279 100 -> Plus
chr3L 8121493..8121589 280..376 100 -> Plus
chr3L 8121655..8121831 377..553 100 -> Plus
chr3L 8121893..8122381 554..1042 99 -> Plus
chr3L 8122466..8122597 1043..1174 100 -> Plus
chr3L 8122662..8123725 1175..2238 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-06 12:50:57 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 1..1344 44..1387 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:03:27 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 1..1344 44..1387 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:32:24 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 1..1344 44..1387 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 12:50:57 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 164..2393 1..2229 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:03:27 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 162..2391 1..2229 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:32:24 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 162..2391 1..2229 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:07 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8128215..8128369 1..154 99 -> Plus
3L 8129084..8129208 155..279 100 -> Plus
3L 8129452..8129548 280..376 100 -> Plus
3L 8129614..8129790 377..553 100 -> Plus
3L 8129852..8130340 554..1042 100 -> Plus
3L 8130425..8130556 1043..1174 100 -> Plus
3L 8130621..8131684 1175..2238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:07 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8128215..8128369 1..154 99 -> Plus
3L 8129084..8129208 155..279 100 -> Plus
3L 8129452..8129548 280..376 100 -> Plus
3L 8129614..8129790 377..553 100 -> Plus
3L 8129852..8130340 554..1042 100 -> Plus
3L 8130425..8130556 1043..1174 100 -> Plus
3L 8130621..8131684 1175..2238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:07 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8128215..8128369 1..154 99 -> Plus
3L 8129084..8129208 155..279 100 -> Plus
3L 8129452..8129548 280..376 100 -> Plus
3L 8129614..8129790 377..553 100 -> Plus
3L 8129852..8130340 554..1042 100 -> Plus
3L 8130425..8130556 1043..1174 100 -> Plus
3L 8130621..8131684 1175..2238 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:03:27 Download gff for FI18858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8121315..8121469 1..154 99 -> Plus
arm_3L 8122184..8122308 155..279 100 -> Plus
arm_3L 8122552..8122648 280..376 100 -> Plus
arm_3L 8122714..8122890 377..553 100 -> Plus
arm_3L 8122952..8123440 554..1042 100 -> Plus
arm_3L 8123525..8123656 1043..1174 100 -> Plus
arm_3L 8123721..8124784 1175..2238 100   Plus

FI18858.pep Sequence

Translation from 1 to 1386

> FI18858.pep
WNQYIVNRSGEHRIMAEVRRRKGEDEPLEDTAISGSDAANKRNSAADSSD
HVDSEEEKIPEEKFVDELAKNLPQGTDKTPEILDSALKDLPDRWKNWVIR
GIFTWIMICGFALIIYGGPLALMITTLLVQVKCFQEIISIGYQVYRIHGL
PWFRSLSWYFLLTSNYFFYGENLVDYFGVVINRVEYLKFLVTYHRFLSFA
LYIIGFVWFVLSLVKKYYIKQFSLFAWTHVSLLIVVTQSYLIIQNIFEGL
IWFIVPVSMIVCNDVMAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATVL
FGILFSYVLCNYQYFICPIQYSEEQGRMTMSCVPSYLFTPQEYSLKLFGI
GKTLNLYPFIWHSISLSLFSSIIGPFGGFFASGFKRAFKIKDFGDMIPGH
GGIMDRFDCQFLMATFVNVYISSFIRTPSPAKLLTQIYNLKPDQQYQIYQ
SLKDNLGDMLT*

FI18858.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23961-PA 455 GF23961-PA 1..455 15..461 2168 93.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14472-PA 449 GG14472-PA 1..447 15..461 2342 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16172-PA 442 GH16172-PA 1..442 15..461 2050 92.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cds-PB 447 CG7962-PB 1..447 15..461 2369 100 Plus
Cds-PA 447 CG7962-PA 1..447 15..461 2369 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13325-PA 442 GI13325-PA 1..442 15..461 2123 94 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22610-PA 443 GL22610-PA 1..443 15..461 2161 94.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20725-PA 443 GA20725-PA 1..443 15..461 2161 94.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25022-PA 447 GM25022-PA 1..447 15..461 2358 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14055-PA 447 GD14055-PA 1..447 15..461 2358 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13151-PA 441 GJ13151-PA 1..441 15..461 2154 93.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20000-PA 455 GK20000-PA 1..455 15..461 2157 92.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21660-PA 447 GE21660-PA 1..447 15..461 2353 99.6 Plus

FI18858.hyp Sequence

Translation from 2 to 1386

> FI18858.hyp
RNQYIVNRSGEHRIMAEVRRRKGEDEPLEDTAISGSDAANKRNSAADSSD
HVDSEEEKIPEEKFVDELAKNLPQGTDKTPEILDSALKDLPDRWKNWVIR
GIFTWIMICGFALIIYGGPLALMITTLLVQVKCFQEIISIGYQVYRIHGL
PWFRSLSWYFLLTSNYFFYGENLVDYFGVVINRVEYLKFLVTYHRFLSFA
LYIIGFVWFVLSLVKKYYIKQFSLFAWTHVSLLIVVTQSYLIIQNIFEGL
IWFIVPVSMIVCNDVMAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATVL
FGILFSYVLCNYQYFICPIQYSEEQGRMTMSCVPSYLFTPQEYSLKLFGI
GKTLNLYPFIWHSISLSLFSSIIGPFGGFFASGFKRAFKIKDFGDMIPGH
GGIMDRFDCQFLMATFVNVYISSFIRTPSPAKLLTQIYNLKPDQQYQIYQ
SLKDNLGDMLT*

FI18858.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CdsA-PB 447 CG7962-PB 1..447 15..461 2369 100 Plus
CdsA-PA 447 CG7962-PA 1..447 15..461 2369 100 Plus