Clone FI18945 Report

Search the DGRC for FI18945

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:189
Well:45
Vector:pFlc-1
Associated Gene/TranscriptCtr1A-RA
Protein status:FI18945.pep: gold
Sequenced Size:2117

Clone Sequence Records

FI18945.complete Sequence

2117 bp assembled on 2012-04-11

GenBank Submission: BT133414.1

> FI18945.complete
GATTATTTAGTGCCTTTTCGTAGGCAGCGCACTGTTAAATAAAAAAACAT
ATGCTTGCAATTAATTCATCAACAATCGTGCGAACAAGTTGTCTGCGGGC
GGACCGTGCGCATTTTGTTTTAATATTATTTATTTCCTTGCCGCAGGAAG
TAAATCATTAATCGCAGATCCACAATAAGAAGTCGGTTAACCAGCTGCTA
TGGACCACGCCCATCACAGTGCGCCCGGTGTTGATCACTCGATGCATCAC
GATCATGTGGGCATGCACCACGATCACAGCGGTATACCTGCTGCGACAGC
GTCTCCAATGGATGCAGCTTCCATGTTCGACCTGATCCCCGATACCAGCG
ATTTGCAGGCAAGTCACGCGGGTCACGCCGCTCACGGAGCGCACAATCAT
GGCGGTGGCTCTGGCACGGGAATGGAGCACATGATGCCCATGGCGTTCCA
TTTTGGCTACAACGAGACGATCCTGTTCTCCTGGTGGCACATCGAAACAG
TGGCCGGTTTGATCGGCTCCATGATCGCCATCTTCCTGCTGGCCCTAATG
TACGAGGGACTGAAGTACTACCGCGAGTATCTATTCTGGAAGACATACAA
TCTGCTGGAATATCGACCTGTGACGGGGCCACAAAGAAATCCGGAGGCAC
CGCGCATACCATCGCCGGCAGCGGCAGCTCCATCGCCCGTTCAACCTTCG
ATGCTGTCGATTAACCACCTGCTCCAGACACTGCTGCACGTGCTCCAGGT
GACGCTGTCCTTCCTGCTCATGCTGATCTTCATGACATACAACGTGTGGC
TCTGCCTGATGGTTGTCCTGGGCGCCGCCGTTGGTTACTTCCTCTTCTGC
TGGAAGAAATCGGTTATCGTGGACGTAACCGAGCACTGTCACTAACAGAG
AACGACTCCCGGTAGCCTAAGTCGCTGTTGTCTTACCGAGATGGAAACGG
AGACGGAGGCGTTGGAGGAGCAAATGTCCATCTGAATGAAAGGCAGAGGC
ATTGGTGCTAAGCTGGGAATCCCAGGAAGCTCTCATCCCCACAGGAAACG
AACACACGCATATATACACACGATCGCACTTCAACAAACCTTGCAGCAAT
TGCAGCTGTTCTCTAGGTATTAGCCTATAAACTAAACTAAATCGATGCAA
CCGCGCTGCATCGTTTACAATCTTTAAAATATTGACATCAAGATCAAGAT
AGTCTATGCTATTAGTAAAGAAAAAAGTGTAATTATATAAAAGAGAACAA
ATTGAGCGACTGGCTAGCGAATTGTATAAAGTTAAGCAATGCAAATATTA
TTTTTTCCGTTGCTACTCAATTTATATATGTATGTGCGCAGGATTCCCCC
AAAAAGCAAATATTTTTTTTTGATCATTACTACTGATATACACCATTTTG
TAAACCAATTATACGATTATGATTATTATTATTTTGTAATAAACTTCATT
GTTTTTATATAAATATATATATATATAAGATATATATTTCACTTTTGGTT
TGTTAGTCCCACAAAAAGACAACACTGTTAAATTTGGCTTCCTTGTGAAA
TGTTGACTTGGCCGCGAATGTTTTAAGGCTTGATTGAGTGTATGCTTCAA
CAGTGCGTTTCATGAGTGTAATTGGTGTATGCAAAGGTTAGCATCGATTT
ATGCTCTGCATTTACGTGTTGTTCAGGTTCAACTGATATTACCTTAGGCT
CGAAAACAGTTACTGTATTATTCAATTAATTTTAACTGCTAATTGTAAAT
TGTTGTCTGTTTGTTTTTTTTTGCAAGTTGACTCCGTAAAAACAGTCGTA
CGATTTTTGCTCAATCCGAAAATGGCTGTTGTGAAATTGCTTTCCTAAAC
GAATGGCCGGCCATCCCAAGTGCATATATATTTACATACTATGTACTGCC
TTAATGTCCCGAAACGCACTGTAAGCAGCATATGTTCACCTGATCCATTG
AAGTGCGTAAATAGATGTTGTAGATATTAAACTTAATGCAAATACATACA
GTAAAGCGACAAGAAATTTATAAATACTATTAATATTAAATATATATTAA
ATCTACATATACATACATTAATGAATAAACAAACACAATATTGTTACAAC
TGAAAAAAAAAAAAAAA

FI18945.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6559047..6560451 694..2102 6695 98.7 Plus
chrX 22417052 chrX 6557629..6557877 445..693 1245 100 Plus
chrX 22417052 chrX 6557361..6557564 233..445 895 95.8 Plus
chrX 22417052 chrX 6553891..6554043 2..154 765 100 Plus
chrX 22417052 chrX 6291395..6291522 1923..2050 415 88.3 Plus
chrX 22417052 chrX 6363728..6363855 1923..2050 415 88.3 Plus
chrX 22417052 chrX 6368293..6368420 1923..2050 415 88.3 Plus
chrX 22417052 chrX 6557200..6557278 155..233 380 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6666850..6668261 694..2105 7060 100 Plus
X 23542271 X 6665438..6665686 445..693 1245 100 Plus
X 23542271 X 6665161..6665373 233..445 1065 100 Plus
X 23542271 X 6661649..6661801 2..154 765 100 Plus
X 23542271 X 6399211..6399338 1923..2050 415 88.3 Plus
X 23542271 X 6471483..6471610 1923..2050 415 88.3 Plus
X 23542271 X 6476053..6476180 1923..2050 415 88.3 Plus
X 23542271 X 6665000..6665078 155..233 395 100 Plus
Blast to na_te.dros performed 2019-03-15 13:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 794..831 184..220 124 84.2 Plus

FI18945.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:38:17 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6553889..6554043 1..154 99 -> Plus
chrX 6557200..6557278 155..233 98 -> Plus
chrX 6557362..6557564 234..445 95 -> Plus
chrX 6557630..6557877 446..693 100 -> Plus
chrX 6559047..6560451 694..2102 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-11 11:40:43 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 1..696 200..895 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:07:02 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 1..696 200..895 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:35:48 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 1..696 200..895 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 11:40:43 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 1..2103 1..2102 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:07:02 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 1..2103 1..2102 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:35:48 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 1..2103 1..2102 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:17 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
X 6661647..6661801 1..154 99 -> Plus
X 6665000..6665078 155..233 100 -> Plus
X 6665162..6665373 234..445 100 -> Plus
X 6665439..6665686 446..693 100 -> Plus
X 6666850..6668258 694..2102 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:17 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
X 6661647..6661801 1..154 99 -> Plus
X 6665000..6665078 155..233 100 -> Plus
X 6665162..6665373 234..445 100 -> Plus
X 6665439..6665686 446..693 100 -> Plus
X 6666850..6668258 694..2102 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:17 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
X 6661647..6661801 1..154 99 -> Plus
X 6665000..6665078 155..233 100 -> Plus
X 6665162..6665373 234..445 100 -> Plus
X 6665439..6665686 446..693 100 -> Plus
X 6666850..6668258 694..2102 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:07:02 Download gff for FI18945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6555680..6555834 1..154 99 -> Plus
arm_X 6559033..6559111 155..233 100 -> Plus
arm_X 6559195..6559406 234..445 100 -> Plus
arm_X 6559472..6559719 446..693 100 -> Plus
arm_X 6560883..6562291 694..2102 100   Plus

FI18945.pep Sequence

Translation from 199 to 894

> FI18945.pep
MDHAHHSAPGVDHSMHHDHVGMHHDHSGIPAATASPMDAASMFDLIPDTS
DLQASHAGHAAHGAHNHGGGSGTGMEHMMPMAFHFGYNETILFSWWHIET
VAGLIGSMIAIFLLALMYEGLKYYREYLFWKTYNLLEYRPVTGPQRNPEA
PRIPSPAAAAPSPVQPSMLSINHLLQTLLHVLQVTLSFLLMLIFMTYNVW
LCLMVVLGAAVGYFLFCWKKSVIVDVTEHCH*

FI18945.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22272-PA 233 GF22272-PA 1..233 1..231 861 82 Plus
Dana\GF23301-PA 256 GF23301-PA 87..256 79..231 322 41 Plus
Dana\GF18342-PA 183 GF18342-PA 10..182 65..230 271 35.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19602-PA 241 GG19602-PA 1..241 1..231 958 89.2 Plus
Dere\GG11899-PA 270 GG11899-PA 40..270 57..231 294 36.8 Plus
Dere\GG25028-PA 178 GG25028-PA 5..177 65..230 282 36.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24714-PA 228 GH24714-PA 4..228 3..231 768 75.5 Plus
Dgri\GH14352-PA 241 GH14352-PA 57..241 67..231 301 39.5 Plus
Dgri\GH23297-PA 241 GH23297-PA 51..241 61..231 301 38.8 Plus
Dgri\GH14206-PA 171 GH14206-PA 2..162 66..220 271 38.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1A-PB 231 CG3977-PB 1..231 1..231 1262 100 Plus
Ctr1A-PA 231 CG3977-PA 1..231 1..231 1262 100 Plus
Ctr1A-PD 241 CG3977-PD 1..241 1..231 1241 95.9 Plus
Ctr1A-PC 241 CG3977-PC 1..241 1..231 1241 95.9 Plus
Ctr1C-PA 270 CG15551-PA 3..270 5..231 343 33.4 Plus
Ctr1B-PA 174 CG7459-PA 2..164 66..220 276 37.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21812-PA 234 GI21812-PA 4..234 3..231 744 76.4 Plus
Dmoj\GI10446-PA 232 GI10446-PA 1..232 1..231 294 35.2 Plus
Dmoj\GI24869-PA 177 GI24869-PA 7..163 64..216 210 32.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13345-PA 220 GL13345-PA 1..220 1..231 834 78.8 Plus
Dper\GL23430-PA 176 GL23430-PA 5..175 65..230 228 36.5 Plus
Dper\GL13975-PA 383 GL13975-PA 324..383 169..231 188 58.7 Plus
Dper\GL13975-PA 383 GL13975-PA 22..100 59..137 187 43 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17816-PA 220 GA17816-PA 1..220 1..231 834 78.8 Plus
Dpse\GA20368-PA 176 GA20368-PA 5..175 65..230 225 36.2 Plus
Dpse\GA13809-PA 376 GA13809-PA 317..376 169..231 188 58.7 Plus
Dpse\GA13809-PA 376 GA13809-PA 22..100 59..137 188 43 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12509-PA 241 GM12509-PA 1..241 1..231 1187 94.6 Plus
Dsec\GM12117-PA 240 GM12117-PA 42..239 59..230 314 40.3 Plus
Dsec\GM23723-PA 178 GM23723-PA 21..177 79..230 269 38.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16812-PA 241 GD16812-PA 1..241 1..231 1180 93.8 Plus
Dsim\GD16719-PA 240 GD16719-PA 42..239 56..230 322 39.4 Plus
Dsim\GD15144-PA 178 GD15144-PA 13..177 71..230 269 37.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16985-PA 231 GJ16985-PA 4..231 3..231 854 77.5 Plus
Dvir\GJ10663-PA 235 GJ10663-PA 38..235 54..231 290 38.1 Plus
Dvir\GJ24513-PA 180 GJ24513-PA 10..171 66..221 240 36.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25589-PA 229 GK25589-PA 1..229 1..231 747 79.1 Plus
Dwil\GK13100-PA 274 GK13100-PA 38..262 48..216 329 37.6 Plus
Dwil\GK13179-PA 173 GK13179-PA 3..164 65..221 320 40.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16762-PA 238 GE16762-PA 1..238 1..231 962 88.4 Plus
Dyak\GE23348-PA 274 GE23348-PA 63..274 79..231 286 36.1 Plus
Dyak\GE25868-PA 178 GE25868-PA 12..177 70..230 270 37.1 Plus

FI18945.hyp Sequence

Translation from 199 to 894

> FI18945.hyp
MDHAHHSAPGVDHSMHHDHVGMHHDHSGIPAATASPMDAASMFDLIPDTS
DLQASHAGHAAHGAHNHGGGSGTGMEHMMPMAFHFGYNETILFSWWHIET
VAGLIGSMIAIFLLALMYEGLKYYREYLFWKTYNLLEYRPVTGPQRNPEA
PRIPSPAAAAPSPVQPSMLSINHLLQTLLHVLQVTLSFLLMLIFMTYNVW
LCLMVVLGAAVGYFLFCWKKSVIVDVTEHCH*

FI18945.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1A-PB 231 CG3977-PB 1..231 1..231 1262 100 Plus
Ctr1A-PA 231 CG3977-PA 1..231 1..231 1262 100 Plus
Ctr1A-PD 241 CG3977-PD 1..241 1..231 1241 95.9 Plus
Ctr1A-PC 241 CG3977-PC 1..241 1..231 1241 95.9 Plus
Ctr1C-PA 270 CG15551-PA 3..270 5..231 343 33.4 Plus