Clone Sequence Records
FI19005.complete Sequence
1718 bp assembled on 2012-03-08
GenBank Submission: BT133302.1
> FI19005.complete
TGCGCCTTGACTCAATTAGTATTTACAATTGGAACGCTGATAAAAAGTGA
ATAAAATTGTTGCATCGCAGGCGAAAGTGGGATCAAATGGAGTCAGCACA
GGAAGACGCGTCCAGCACGGATGTGTTTCTGGTCACGGCAAACGTTGGCA
GCCTGTTCGAGGACCCGGAGAGGCTTCTGCAGCTATGGCTAAGCGAATTT
CTCGCAAAGATCGCCGTCGCACAGCCCCGTTTCCTGGCCCTCCACCTACA
GGAGGTGGGCGGCAAGACGTACGAGAAGTCCATGGAGTACGTCCAGGAGT
TCATCAGGTGCCTCTGCGATGCTCCCGAAATGGGCGACTTCACCTGCGTA
CACATCTTCATGGACGAGGACTTCAAATCGGCCGAGCACTTTACGGCTCT
TGGAAGTCTTTACTTTGTGCATAAGGATGTTGCTTCTCTGAAGATCTGGA
ACTTCCTAACTCACAGCTGGGAAGAAAGTCTTCAAGATGTTAAGGATAAA
CATATCTATTCCGGAAATATTGAAACTATTGCTACCAAAGAAAAGTCCAA
GTTCCCACAGCACTTCTTTCCGGAGTGTAAATGGTCCCGAAAAGGTTTTA
TGCGAACCCGATGGGAAATCAATGGCACCGTCATCGATCTAGTCAACATT
CACTTATTCCACGATGCATCCAATTTGGCTGCATGCGAAAATTTCCCCTC
CGTTTATTGTAAGACGCGCAGAAGAGCCCTAGTTCATACCATTGAAAGGT
TCCATTTGGACGAACAGAATGGCACTGTGCCATTTTTCCTCTTTGGGGAT
TTTAATTTTAGATGTGACACTGAAGGCGTTGTGAAAGAATTAACTGAAAA
CTTGACCCCTCATCGCGTTCAAAATGTCAAGAATGAGAACGATAAGATCC
ATTATCGCAACTCAACTGGAAACAACGTACTTACCGTTGGAAAGAAAGAA
TTTAGTCATGCCGACCATCAACTCAAGTTCAAAGAAGACTGGCTAAAGAA
ATTTGACAGAGAGCTGGAGCCACTTAAAGACGTCCTAGTCGAGTATCCAA
TTAAGTTCGTTCCCTCATATCCCTTCGAAGAAGACCCAGAAATGCCCACC
GACTATATGTCTACGCGCTGTCCGGCCTGGTGCGACCGGATTCTGATGAG
TCCCCAAGTCAATGAGATTATCCAGAGCGATGATTGGACATATGGCATGA
TTGGAGAAGCTGTCTGCATGGGCGACCATAAGGTCCTGCGGATCCCACAG
CTATATCGAAGCTACCGGAGAGCTTGGCGAACCTGGTGAACCAGGCGCTG
AACGACGAAAGCCTGTGGATGGAGCAGTCCGTGGTGGACGATTCGAGTGC
ATCGAACAGCTCCGCGGCCAAGTCGCGCTATATCTTGATGAAGAAGGGAA
CCACAAGTCCGTGCAAGGAAGACACCGACGAGGCAGGCGCTTTGGCCGCC
AAAAGCGACGGACTGGATCCCGAGAGTGCAATGCTGCTGAAGGAAACAAC
CGTCTAAGGGAATCGCAATTTTTAACTTATGCCAGCTGAGCCAATAACTT
GTACCGTGCGGTTTTGTGTTATGTACCTGTTATGTTAAACGCGTCCAATA
CGAGCTATTTATTTGTCACACCGCCAAGAAATGTGGAGAGCAGTCGCAGT
AATAAAATATACATACGTGGTAGTTGCATTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
FI19005.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr3R | 27901430 | chr3R | 20863613..20864063 | 1681..1231 | 2195 | 99.1 | Minus |
| chr3R | 27901430 | chr3R | 20866408..20866650 | 1234..992 | 1215 | 100 | Minus |
| chr3R | 27901430 | chr3R | 20867709..20867940 | 396..165 | 1145 | 99.6 | Minus |
| chr3R | 27901430 | chr3R | 20867294..20867474 | 575..395 | 890 | 99.4 | Minus |
| chr3R | 27901430 | chr3R | 20867063..20867239 | 750..574 | 885 | 100 | Minus |
| chr3R | 27901430 | chr3R | 20868156..20868319 | 164..1 | 790 | 98.8 | Minus |
| chr3R | 27901430 | chr3R | 20866703..20866862 | 996..837 | 770 | 98.8 | Minus |
| chr3R | 27901430 | chr3R | 20866918..20867008 | 837..747 | 440 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25040426..25040877 | 1682..1231 | 2200 | 99.1 | Minus |
| 3R | 32079331 | 3R | 25043224..25043466 | 1234..992 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 25044525..25044756 | 396..165 | 1145 | 99.6 | Minus |
| 3R | 32079331 | 3R | 25044110..25044290 | 575..395 | 890 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25043879..25044055 | 750..574 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 25044972..25045135 | 164..1 | 790 | 98.8 | Minus |
| 3R | 32079331 | 3R | 25043519..25043678 | 996..837 | 770 | 98.8 | Minus |
| 3R | 32079331 | 3R | 25043734..25043824 | 837..747 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 13:01:37 has no hits.
FI19005.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:02:19 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr3R | 20866707..20866862 | 837..992 | 99 | <- | Minus |
| chr3R | 20866919..20867006 | 749..836 | 98 | <- | Minus |
| chr3R | 20867065..20867237 | 576..748 | 100 | <- | Minus |
| chr3R | 20867294..20867473 | 396..575 | 99 | <- | Minus |
| chr3R | 20863613..20864061 | 1233..1681 | 99 | <- | Minus |
| chr3R | 20866410..20866649 | 993..1232 | 100 | <- | Minus |
| chr3R | 20867710..20867940 | 165..395 | 99 | <- | Minus |
| chr3R | 20868156..20868319 | 1..164 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-08 10:56:31 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5PtaseI-RB | 1..1203 | 87..1289 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:55:37 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5PtaseI-RB | 1..1203 | 87..1289 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:18:58 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5PtaseI-RB | 1..1203 | 87..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 10:56:31 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5PtaseI-RB | 1..1681 | 1..1681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:55:37 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5PtaseI-RB | 17..1697 | 1..1681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:18:58 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5PtaseI-RB | 17..1697 | 1..1681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:19 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25044972..25045135 | 1..164 | 98 | | Minus |
| 3R | 25044526..25044756 | 165..395 | 99 | <- | Minus |
| 3R | 25040427..25040875 | 1233..1681 | 99 | <- | Minus |
| 3R | 25043226..25043465 | 993..1232 | 100 | <- | Minus |
| 3R | 25043523..25043678 | 837..992 | 99 | <- | Minus |
| 3R | 25043735..25043822 | 749..836 | 100 | <- | Minus |
| 3R | 25043881..25044053 | 576..748 | 100 | <- | Minus |
| 3R | 25044110..25044289 | 396..575 | 99 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:19 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25044972..25045135 | 1..164 | 98 | | Minus |
| 3R | 25044526..25044756 | 165..395 | 99 | <- | Minus |
| 3R | 25040427..25040875 | 1233..1681 | 99 | <- | Minus |
| 3R | 25043226..25043465 | 993..1232 | 100 | <- | Minus |
| 3R | 25043523..25043678 | 837..992 | 99 | <- | Minus |
| 3R | 25043735..25043822 | 749..836 | 100 | <- | Minus |
| 3R | 25043881..25044053 | 576..748 | 100 | <- | Minus |
| 3R | 25044110..25044289 | 396..575 | 99 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:19 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25044972..25045135 | 1..164 | 98 | | Minus |
| 3R | 25044526..25044756 | 165..395 | 99 | <- | Minus |
| 3R | 25040427..25040875 | 1233..1681 | 99 | <- | Minus |
| 3R | 25043226..25043465 | 993..1232 | 100 | <- | Minus |
| 3R | 25043523..25043678 | 837..992 | 99 | <- | Minus |
| 3R | 25043735..25043822 | 749..836 | 100 | <- | Minus |
| 3R | 25043881..25044053 | 576..748 | 100 | <- | Minus |
| 3R | 25044110..25044289 | 396..575 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:55:37 Download gff for
FI19005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20866149..20866597 | 1233..1681 | 99 | <- | Minus |
| arm_3R | 20868948..20869187 | 993..1232 | 100 | <- | Minus |
| arm_3R | 20869245..20869400 | 837..992 | 99 | <- | Minus |
| arm_3R | 20869457..20869544 | 749..836 | 100 | <- | Minus |
| arm_3R | 20869603..20869775 | 576..748 | 100 | <- | Minus |
| arm_3R | 20869832..20870011 | 396..575 | 99 | <- | Minus |
| arm_3R | 20870248..20870478 | 165..395 | 99 | <- | Minus |
| arm_3R | 20870694..20870857 | 1..164 | 98 | | Minus |
FI19005.hyp Sequence
Translation from 86 to 1288
> FI19005.hyp
MESAQEDASSTDVFLVTANVGSLFEDPERLLQLWLSEFLAKIAVAQPRFL
ALHLQEVGGKTYEKSMEYVQEFIRCLCDAPEMGDFTCVHIFMDEDFKSAE
HFTALGSLYFVHKDVASLKIWNFLTHSWEESLQDVKDKHIYSGNIETIAT
KEKSKFPQHFFPECKWSRKGFMRTRWEINGTVIDLVNIHLFHDASNLAAC
ENFPSVYCKTRRRALVHTIERFHLDEQNGTVPFFLFGDFNFRCDTEGVVK
ELTENLTPHRVQNVKNENDKIHYRNSTGNNVLTVGKKEFSHADHQLKFKE
DWLKKFDRELEPLKDVLVEYPIKFVPSYPFEEDPEMPTDYMSTRCPAWCD
RILMSPQVNEIIQSDDWTYGMIGEAVCMGDHKVLRIPQLYRSYRRAWRTW
*
FI19005.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5PtaseI-PB | 400 | CG31110-PA | 1..400 | 1..400 | 2172 | 100 | Plus |
| 5PtaseI-PC | 699 | CG42283-PC | 1..382 | 1..382 | 2070 | 100 | Plus |
| 5PtaseI-PF | 786 | CG42283-PF | 1..382 | 1..382 | 2070 | 100 | Plus |
FI19005.pep Sequence
Translation from 86 to 1288
> FI19005.pep
MESAQEDASSTDVFLVTANVGSLFEDPERLLQLWLSEFLAKIAVAQPRFL
ALHLQEVGGKTYEKSMEYVQEFIRCLCDAPEMGDFTCVHIFMDEDFKSAE
HFTALGSLYFVHKDVASLKIWNFLTHSWEESLQDVKDKHIYSGNIETIAT
KEKSKFPQHFFPECKWSRKGFMRTRWEINGTVIDLVNIHLFHDASNLAAC
ENFPSVYCKTRRRALVHTIERFHLDEQNGTVPFFLFGDFNFRCDTEGVVK
ELTENLTPHRVQNVKNENDKIHYRNSTGNNVLTVGKKEFSHADHQLKFKE
DWLKKFDRELEPLKDVLVEYPIKFVPSYPFEEDPEMPTDYMSTRCPAWCD
RILMSPQVNEIIQSDDWTYGMIGEAVCMGDHKVLRIPQLYRSYRRAWRTW
*
FI19005.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5PtaseI-PB | 400 | CG31110-PA | 1..400 | 1..400 | 2172 | 100 | Plus |
| 5PtaseI-PF | 786 | CG42283-PF | 1..382 | 1..382 | 2070 | 100 | Plus |
| 5PtaseI-PC | 699 | CG42283-PC | 1..382 | 1..382 | 2070 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpse\GA16016-PA | 388 | GA16016-PA | 5..378 | 11..386 | 1659 | 79 | Plus |
