Clone FI19006 Report

Search the DGRC for FI19006

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:190
Well:6
Vector:pOT2
Associated Gene/TranscriptNop17l-RA
Protein status:FI19006.pep: gold
Sequenced Size:3534

Clone Sequence Records

FI19006.complete Sequence

3534 bp assembled on 2012-03-23

GenBank Submission: BT133346.1

> FI19006.complete
ACCAACACGAGCAGCCGGTCAGCGGAAAAGTTTCTAGAACGTCAAACTCG
AACTCCCATCAAAGAGTCTTTGGCAAAGGAGCCCATTTAACAGACAATTA
TTTTATTCAGTGCCGTTGTGTTCACAAAGCATAATTGTGTTCAATTTAGA
ACCTTCCAGAAATAGAAACCCAACGCATTTGCCAAGGAAACGTGGCCCAA
AACTGAGCAACCCCTAACAAATAGAAACAAACAAAAAATCAAAACCCGTC
GAAGTGATAAGAAAATTTGTATTTGTGTAGTAAAAGTGCCGAGGAGAGAA
GAGGAGACCGAAGAGATCCCTCCGTGAGTGAAGTGTGCCTGCGAGAAAGC
TATGTCCGCATCTAGATCGCGTAATAAACAATCCAAACTTTGTGACGATG
AGCGGCTCGATATAAGCAGGGACGAGTTCAACCGATTCCAGGAGGCCTTT
GGCAAGGAGGAGTTCCGCAAGCTCTTCTTCGACTACGTGGATGAGATCCA
GGATCCTGAGAACCGCAAGATCTACGAGTCAGAGATCACGCAGCTGGAGA
AGGAGCGTGGCGTGGAGGTGAGGTTCATCCACCCGAAGCCGGGATTCGTG
ATCAAGACCGCTCTAGATGGCGAGCTCAAGTGCTTCATCAACATCGCTAG
CTGTGAGGAGATCCAGAGGCCCAAAAATGAGGTGGCCACGGATCCGTCGA
GTGGTAGCCGGGGCCTGAGCTGGTCCATTCCGATGGCCCAGACCACGTCG
CGCGATGACTTCGATGCGAAAAACAACCACTGCAAGGTGTTCGACGTCGT
CTTCCATCCCGACGCCCTTCACCTGGCCATGCGGAACAAACAGTTCCGCC
AATGCCTCATCGATACGGCACTGGACGCAATCGAACGCGAGTACAAGGTC
TCGCTGGATCGCGCCAACCTCAAGTTCCCCAAGCTGGACTACAAGGGTAT
TCCCCGTCCCACTGTGATACGCAAGATGGCCGATAATCCCACGGCCGAGG
AGCAGGAGCCACATCCCCTGGCGCACATGTTCCCCACAAAGCCACCCGCT
CCGGGGAAACAAGAGCCCCGTGTCCTGCCCATGAAAACGAAGCCCTCTCC
GGTGCCGGAGTTCACGGTGCCCAGGTATACGATCAAGCACAGCCACGACG
TGGACTTGTCCGAGTACACGGACGAGCTGGATGCCAAGCTGCACGTGACC
GTTCCTCGTTCTCTTGTCGTGGAGATCGAGCTCCCCCTGCTCCGCTCGAC
AGCCGAGTGCCAGCTGGACGTCACCTCCAAGTCCATATACCTGTTCAGCG
AGCGACAGGGCGCCAAGTACCGCCTGAAGCTGGACCTGCCCTTCATCGTG
GACGACAAGGCGGGCCGGGCCCGCTTCGACACGGATATGCGTCGTTTGAG
CATCACGTTACCTGTGGTCCGGAAGAGCATCCAGGAGCAAGCCCAGATGC
ACGAAACCTTGCGCCACTTCAGCCGCGAGGACAGCGGCGTGGAGCTGCAC
TCCAATAGCGAATCGCCGGTGGAGGAGGATCCCGATGGCGAACTCAGCGA
TTCCAAGGCGGATATTTCCGAGACTTCATCGCCCAGTGTCGCACCTGCCA
ATAGCCCGTTCCTGAAGAGCTCCGTGCACTACCAGCTGCCCAGCAAGTTC
GACTGCAACGTGCTGGACAATGTGATGGCCTTTGTGCTGCACGTGCCCAA
CGTTCAACCGGACTCCATTGAGCAGTTGAGGGAGCAGCGGAGCCTGCACC
TGAAGTTCGCCACCATCGGCAGTGGCTACTATCCCACCCACTACGCTTTC
TACGTGGAACTGTCGGCGGAGCATGAGGATTCCTCCATCGAGAGCGCGGA
GGCAGAGGCCTGGGACAACAATGTGGTGCTCAAGCTTTGTCTGAATTCGC
AGAGCGAGACTCCGGCTAGCTACCTGGCCGGTCTAGATGCCACGGAGCTC
AAAGAGTACCCAGTTCATGGGCAGTACCATGTGAAGAGCAAGGGAAAGGT
TAACGCAAAGAAGGATAATGCTCCGCTCGATGTCAAATTCGAGCGCAACC
AGGAGGGCCATGCCCTGAAGGTTACCATTCGCCCCGGAACAAAGGAGGAG
GAGGAAGATAAGGAGAACCAAGACCAAGAGCCCGAAAGCGATCAGCAGCA
GCAGCAACAGGTGCAGAACAAGAAGCCCGGCAAGAAGCAACGGAAGAAGA
ATAAGAAGGAGCGCTCCCTATCCGAATCTGCCTGCGCAGATATGATCCTC
CAGGAGCCACTGGCTAAAACTAATGAGCTTCAGCCGAGGGCCACGTTTAA
GTTGCCGCCGCAGCGCAAGCAACGCAGCTACTCGGAGTGCAACGATAGCA
CTGGCCGCTCTCATCGCGGCATTCTCAAGCGTTTCAGCCGCTACGGGCCC
CGACCCTCGATGTCGGACAGCTGGTCGTCCATTGACGACTCCTCCTCGTA
CTCGTGCTCCGTGGATGCATCCGGAACATCGCTGTTCTCTCAATCATTCG
GCGGCATTCCCGAGGAGGACCGTTCGGATGCCGGGCTCTCGGAGAGCTGC
AAGAAGACTGTTAGATTTAACGATCACATTATGAAGCAAGTGTTCCGACT
CGACTCCAGCATCCTGGGTCAGCGCAAGAAGAACCAGAAGCGACGCGATC
TCAAGCTGCGGGCTCAGCAGCGTCGCCTCAGCGAGGGCGATTCTGTCGAC
TACGAGGAAACCCGGGGCTCTGCCCTCAAGCAAGAAGAAAATCCGTCAAG
GAACTGCAACGATAGCGGATTGGATCTCACTGGAGCAGCAGGTGCCCACA
GCAACAACAATGAATCGGATGCTAAGAACACCATGATGTTTGAAATGGAT
GATTAGGATGTTATTTAAACCATAAATATATTCATATTTTTTGAGTGATT
TAGTGGCATGTTTTCAAGGTTTTTAAATGCTACTACATAAATGTTAACTA
ACGCAACGTTTTTTTTTTTTTAATATTTATACTGTAATTCCTTTTATATC
GAGGCGAATTGCTCAATTGGAAATACACAAAATTGTATTTAGGCAACACG
AATCAGGGCTAAATCAGAAATCAAAATGTTCATTACATCAAATACTAAGT
GTTATGTAATTCGGTTAAACATTGAAATTGTTAAAACGCAAGATGAAATC
CTACGCTGAACTGAAAAAGAAACCTATTATTATAGATCGATAATTTCATA
TTCATTCTCATTGAAGAACACACAACAATGATGTCTTACAAGTTAGCAAA
CTACAAGTTTTAAGTAAACATTAAAACGCTTGTTTATTGGCTCCATGCTC
AGCTCATATAACAATCATAACACGATAAACCTAAACAATATCAATAGTTA
ACAATTCCTCTAGTATTACACACAACAAAATCACCCAATGCATAAGTAGA
GTATAAGCTACGTACATGTTTAGAAGCACTGGCTGAATCAATGCATGTAA
TTTTAACTTTTATAAGCGAGCTGCAAGTTAAAATACATATACATCTCTTA
TGAATGAGAAATCCAAAAAAAAAAAAAAAAAAAA

FI19006.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3690832..3692260 1576..148 7145 100 Minus
chr2R 21145070 chr2R 3689501..3690521 2597..1577 5105 100 Minus
chr2R 21145070 chr2R 3688105..3688890 3514..2729 3930 100 Minus
chr2R 21145070 chr2R 3693547..3693695 149..1 745 100 Minus
chr2R 21145070 chr2R 3689306..3689439 2730..2597 670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7803512..7804940 1576..148 7130 99.9 Minus
2R 25286936 2R 7802181..7803201 2597..1577 5105 100 Minus
2R 25286936 2R 7800783..7801570 3516..2729 3940 100 Minus
2R 25286936 2R 7806226..7806374 149..1 745 100 Minus
2R 25286936 2R 7801986..7802119 2730..2597 670 100 Minus
Blast to na_te.dros performed 2019-03-15 13:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6914 2084..2212 162 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6871 2093..2220 152 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6831 2088..2200 142 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6881 2093..2212 139 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2421 2099..2212 129 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6818 2114..2212 128 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2637 2093..2358 127 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2415 2111..2212 120 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6879 2093..2198 119 61.3 Plus

FI19006.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:11:24 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3688105..3688888 2731..3514 97 <- Minus
chr2R 3689306..3689438 2598..2730 100 <- Minus
chr2R 3689501..3690521 1577..2597 100 <- Minus
chr2R 3690832..3692258 150..1576 100 <- Minus
chr2R 3693547..3693695 1..149 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-23 16:36:36 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
CG1553-RA 1..2505 352..2856 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:58:51 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
Nop17l-RC 1..2505 352..2856 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:23:57 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
Nop17l-RC 1..2505 352..2856 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-23 16:36:36 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
CG1553-RA 26..3539 1..3514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:58:51 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
Nop17l-RA 12..3525 1..3514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:23:57 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
Nop17l-RA 12..3525 1..3514 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:24 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7800785..7801568 2731..3514 100 <- Minus
2R 7801986..7802118 2598..2730 100 <- Minus
2R 7802181..7803201 1577..2597 100 <- Minus
2R 7803512..7804938 150..1576 99 <- Minus
2R 7806226..7806374 1..149 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:24 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7800785..7801568 2731..3514 100 <- Minus
2R 7801986..7802118 2598..2730 100 <- Minus
2R 7802181..7803201 1577..2597 100 <- Minus
2R 7803512..7804938 150..1576 99 <- Minus
2R 7806226..7806374 1..149 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:24 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7800785..7801568 2731..3514 100 <- Minus
2R 7801986..7802118 2598..2730 100 <- Minus
2R 7802181..7803201 1577..2597 100 <- Minus
2R 7803512..7804938 150..1576 99 <- Minus
2R 7806226..7806374 1..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:58:51 Download gff for FI19006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3688290..3689073 2731..3514 100 <- Minus
arm_2R 3689491..3689623 2598..2730 100 <- Minus
arm_2R 3689686..3690706 1577..2597 100 <- Minus
arm_2R 3691017..3692443 150..1576 99 <- Minus
arm_2R 3693731..3693879 1..149 100   Minus

FI19006.hyp Sequence

Translation from 351 to 2855

> FI19006.hyp
MSASRSRNKQSKLCDDERLDISRDEFNRFQEAFGKEEFRKLFFDYVDEIQ
DPENRKIYESEITQLEKERGVEVRFIHPKPGFVIKTALDGELKCFINIAS
CEEIQRPKNEVATDPSSGSRGLSWSIPMAQTTSRDDFDAKNNHCKVFDVV
FHPDALHLAMRNKQFRQCLIDTALDAIEREYKVSLDRANLKFPKLDYKGI
PRPTVIRKMADNPTAEEQEPHPLAHMFPTKPPAPGKQEPRVLPMKTKPSP
VPEFTVPRYTIKHSHDVDLSEYTDELDAKLHVTVPRSLVVEIELPLLRST
AECQLDVTSKSIYLFSERQGAKYRLKLDLPFIVDDKAGRARFDTDMRRLS
ITLPVVRKSIQEQAQMHETLRHFSREDSGVELHSNSESPVEEDPDGELSD
SKADISETSSPSVAPANSPFLKSSVHYQLPSKFDCNVLDNVMAFVLHVPN
VQPDSIEQLREQRSLHLKFATIGSGYYPTHYAFYVELSAEHEDSSIESAE
AEAWDNNVVLKLCLNSQSETPASYLAGLDATELKEYPVHGQYHVKSKGKV
NAKKDNAPLDVKFERNQEGHALKVTIRPGTKEEEEDKENQDQEPESDQQQ
QQQVQNKKPGKKQRKKNKKERSLSESACADMILQEPLAKTNELQPRATFK
LPPQRKQRSYSECNDSTGRSHRGILKRFSRYGPRPSMSDSWSSIDDSSSY
SCSVDASGTSLFSQSFGGIPEEDRSDAGLSESCKKTVRFNDHIMKQVFRL
DSSILGQRKKNQKRRDLKLRAQQRRLSEGDSVDYEETRGSALKQEENPSR
NCNDSGLDLTGAAGAHSNNNESDAKNTMMFEMDD*

FI19006.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Nop17l-PA 834 CG1553-PA 1..834 1..834 4338 100 Plus
Nop17l-PB 834 CG1553-PB 1..834 1..834 4338 100 Plus
Nop17l-PC 834 CG1553-PC 1..834 1..834 4338 100 Plus

FI19006.pep Sequence

Translation from 351 to 2855

> FI19006.pep
MSASRSRNKQSKLCDDERLDISRDEFNRFQEAFGKEEFRKLFFDYVDEIQ
DPENRKIYESEITQLEKERGVEVRFIHPKPGFVIKTALDGELKCFINIAS
CEEIQRPKNEVATDPSSGSRGLSWSIPMAQTTSRDDFDAKNNHCKVFDVV
FHPDALHLAMRNKQFRQCLIDTALDAIEREYKVSLDRANLKFPKLDYKGI
PRPTVIRKMADNPTAEEQEPHPLAHMFPTKPPAPGKQEPRVLPMKTKPSP
VPEFTVPRYTIKHSHDVDLSEYTDELDAKLHVTVPRSLVVEIELPLLRST
AECQLDVTSKSIYLFSERQGAKYRLKLDLPFIVDDKAGRARFDTDMRRLS
ITLPVVRKSIQEQAQMHETLRHFSREDSGVELHSNSESPVEEDPDGELSD
SKADISETSSPSVAPANSPFLKSSVHYQLPSKFDCNVLDNVMAFVLHVPN
VQPDSIEQLREQRSLHLKFATIGSGYYPTHYAFYVELSAEHEDSSIESAE
AEAWDNNVVLKLCLNSQSETPASYLAGLDATELKEYPVHGQYHVKSKGKV
NAKKDNAPLDVKFERNQEGHALKVTIRPGTKEEEEDKENQDQEPESDQQQ
QQQVQNKKPGKKQRKKNKKERSLSESACADMILQEPLAKTNELQPRATFK
LPPQRKQRSYSECNDSTGRSHRGILKRFSRYGPRPSMSDSWSSIDDSSSY
SCSVDASGTSLFSQSFGGIPEEDRSDAGLSESCKKTVRFNDHIMKQVFRL
DSSILGQRKKNQKRRDLKLRAQQRRLSEGDSVDYEETRGSALKQEENPSR
NCNDSGLDLTGAAGAHSNNNESDAKNTMMFEMDD*

FI19006.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11794-PA 843 GF11794-PA 1..839 1..834 3197 75.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10709-PA 845 GG10709-PA 4..845 2..834 3946 90.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21580-PA 893 GH21580-PA 1..883 1..830 2306 57.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Nop17l-PA 834 CG1553-PA 1..834 1..834 4338 100 Plus
Nop17l-PB 834 CG1553-PB 1..834 1..834 4338 100 Plus
Nop17l-PC 834 CG1553-PC 1..834 1..834 4338 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19552-PA 885 GI19552-PA 1..874 1..834 2495 60 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11241-PA 846 GL11241-PA 3..841 2..834 2897 68.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13787-PA 846 GA13787-PA 3..841 2..834 2902 68.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20755-PA 838 GM20755-PA 1..838 1..834 4108 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15299-PA 394 GD15299-PA 1..394 1..394 2070 96.7 Plus
Dsim\GD15300-PA 148 GD15300-PA 1..148 687..834 753 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21124-PA 906 GJ21124-PA 1..890 1..827 2439 58.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21583-PA 1204 GK21583-PA 28..769 16..787 2412 65.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23618-PA 846 GE23618-PA 4..846 2..834 3975 90.2 Plus