Clone FI19008 Report

Search the DGRC for FI19008

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:190
Well:8
Vector:pOT2
Associated Gene/TranscriptAPC4-RA
Protein status:FI19008.pep: gold
Sequenced Size:2646

Clone Sequence Records

FI19008.complete Sequence

2646 bp assembled on 2012-03-08

GenBank Submission: BT133315.1

> FI19008.complete
ATCGATAGCAGGAATATTATTCGATAGACTGCAACAGGAGCCGGCAAAGT
GTAAACTAAAATTATTATATTGAAATATTTGATGCACAGTAGAGACGCCG
CGAGCCAATTCTAGCGTGGAAAGATGGCACAAACGAGCTCCATGAAGTTG
CTGGGCGCCCGCAACATGTCCTGCATTGTGGAGCGTATGGAGTGGAACAA
CAAGATGGATCTAATTGCCTACGGAACGGAAAAGGGTGAGGTGGTCATCC
AGCGTCTGAACTGGCAAAAGATTGTCACCTTTCCCACGCCCGGCGAGGAT
GTGCGGGTGCGTTCGCTCAGCTGGCAAATGGACGAGACACTCCTGGCGGT
TGGCTACAGCAACGGCAAGGTGGCGCTCCTGGACGCCGAGAGCGGAACGA
TAATATCAGGCCTCATTTACGAGGACGACATCAAGAAGGTCTACTTCAGC
AAGGCCATCAACTCGCAGGAGAACCTAGGAACTTACACATGTAATGTCAA
GGATAAACACCGAAGGTTCCTGCCCAAACTGCAGCCAATGACCAATATTG
ATCCGTGCCTGAAAACCCTGGACCAAAAGTCCTTTCCAAAGGGATCACCT
TGCTTTCTGGTGGTGATAATGCGCAGCGGCAAAGTGCACCTACTGCTCCT
AGGAGCCCTGCAGGCGGGCAGCATCGATCTCACACAGCACATTCTGCATC
CGCACGAGTTCGATGTGTACGATGTGAGGATGAACGGAGACTGTAATGCC
ATTTATGCTCTTTTGCGGGACGGTCAGGAGCTGATATTGCTGCACTTTCA
AAACCAGGTGCTGCAGGATTGCATGGCACCCATGCTGGAGCTGGCAACGC
ATTGTGCCCACATCCTAGAAACCAAAAACTATATTAATGACACGCAACAA
TGTTTGACGGAGGCCTGGGAGACCGTGCAGTTGGAAATGGACAATAAGCT
AACCAGGTACGCCAATTCCCAGCCGTACGGAGTGATATCTGCCCATTTTC
TGGAGCTGCACGTCTTTGGATTCGCTACCTTCGAGGTAGAGGAGTTTTTG
TTCGAGACTCTTTCCGAGAAGGGTTTCAAGAAGATTGCCAACTCGGTGGA
CCTTAGTTTAAGCAATCTGCAGAGCTTAGTTTTCAAGCAACTGAATGGAG
CAGCCATCAACATGTTCTATTTCCTCAACACAATCGCGGGTTTCGGTCGC
ATGTCGCACTTTTTTGAGTCCCTAATCTCTCCGGATGTGGCCAACGAAGC
GATGCGAGCCTGTGGAGGATTTGTGCTCAAAGTACACGAGCTGCAGCGAA
CAATCGACACGTTGGCGTACGACATGAAGCTCTTTCACGCCTGGATGATA
TTCACAATACTACGGCTGTCGCATCAGGAGATTCCCGATGACCTGGTGCT
CACCGAGGAGGAGAACATTGCCATGGCCGACTTCATCTGCGCCATGGAAC
CGGAATTGGACGATCGCAGCGATGATGAGGATGAACTGGATTCGCAATCC
CAAACGCCACCGCCTGCGCGCAGCAAATTCAATTTGGAACGAGTGGGCCA
GTATCTGGACAATGCCTACCTCACACAGCTCTATCCCAGGGATCCAGTCC
AGCTGTGGGAGGAGATGGTAACCGACAACGAATGCCTAAGCAACTGCAAA
CTTTTTGTGCCCCACGACGTGAACCTGTCGCTTGTGCAGCAGCGCGACAA
GATGTTCAATGCCATCGATGCCGTGTTCCATAAGCCAACGGAGAGCATAA
GCGGAAGTTTCAAGGTCTCCTCGACGGTGATATGCAACGACCTGCCGCCC
ATGGAGCCCGGCGAGGACCATAGGGACAGGGATCTCGTCACCTGCACCTA
TTACGTTAACGAAGCGTCCAGGACCGACATGTTGGCCTGCACCATCAGCG
GGCAGGAGGCCATGATACTCGAGTTTAGTCGAGCGGGCGATGAATGCGTG
CGCTGCACTAGAATTACACTGGAGCCAGGATTATTTACAACATCCGTGTC
CGAAGATTTCTGTTACCTACGCTTCGTCGACCTGCAGTTCTACAATGAAT
CTTCGCTATCGATACTGGCCCAGTCCATAAATGCGGGACCTGGCATGCGA
CCGCATAGCTTCTTTATACAATTCTCACTGACCGCGGCGCTGAATTACAG
CACACAGCACCGAATGGGACCGTTGGTCAAGCTGAGCGAAGCCACCGTGT
CGCAAAGCATCCATGACATTGCCGATGGTGCCGCCTTCAAGGGACTGGAC
GGATTTAGCGACATGTTGGCCGTCTCGGGCAGCAGGAAGGTGGCCACCGT
TCTCTCCGATCGCAAGCGCAAGATGACCATTTTTGAGATGGAAATCGAGG
AGGAGGAGGATGACACGGAAATGTCCCAGGCCTCGTTTCTGGACATCAGC
AAAGAGTCTGTGCTGGCTGGCGTTCCCGATGCGGAGAAACAGGAGGCGTA
GTCTTGAATCTATTGAATTTAAATTATATTGATTGTTGTGTGATAACTTA
AAATGTTTCCAATAATTTTATATTTTACAATTCGTAAAGGCATTGGTGGT
AGAAAAGAATGGTTAAAATTCTTGTTACTCACGATTTGTCCGTTAAAATA
GGGCTGAATAAATCAAATAATCTGTTAAAAAAAAAAAAAAAAAAAA

FI19008.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8976270..8977675 1217..2626 6955 99.7 Plus
chrX 22417052 chrX 8975341..8975744 475..878 2020 100 Plus
chrX 22417052 chrX 8975043..8975287 235..479 1225 100 Plus
chrX 22417052 chrX 8974734..8974973 1..240 1200 100 Plus
chrX 22417052 chrX 8975802..8975979 879..1056 890 100 Plus
chrX 22417052 chrX 8976040..8976202 1056..1218 815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9084467..9085859 1217..2613 6875 99.6 Plus
X 23542271 X 9083538..9083941 475..878 2020 100 Plus
X 23542271 X 9083240..9083484 235..479 1225 100 Plus
X 23542271 X 9082931..9083170 1..240 1200 100 Plus
X 23542271 X 9083999..9084176 879..1056 890 100 Plus
X 23542271 X 9084237..9084399 1056..1218 815 100 Plus
X 23542271 X 22157700..22157778 2553..2631 200 83.5 Plus
X 23542271 X 22177318..22177397 2553..2632 190 82.5 Plus
X 23542271 X 22246413..22246492 2553..2632 190 82.5 Plus
X 23542271 X 22201996..22202074 2553..2631 185 82.3 Plus
X 23542271 X 22212141..22212219 2553..2631 185 82.3 Plus
X 23542271 X 22217192..22217270 2553..2631 185 82.3 Plus
X 23542271 X 22226391..22226469 2553..2631 185 82.3 Plus
X 23542271 X 22231388..22231466 2553..2631 185 82.3 Plus
X 23542271 X 22236383..22236461 2553..2631 185 82.3 Plus
X 23542271 X 22241390..22241468 2553..2631 185 82.3 Plus
X 23542271 X 22251400..22251478 2553..2631 185 82.3 Plus
X 23542271 X 22182306..22182384 2553..2631 185 82.3 Plus
X 23542271 X 22187183..22187261 2553..2631 185 82.3 Plus
X 23542271 X 22196992..22197070 2553..2631 185 82.3 Plus
X 23542271 X 13791224..13791302 2631..2553 185 82.3 Minus
X 23542271 X 22142876..22142954 2553..2631 185 82.3 Plus
X 23542271 X 22147602..22147680 2553..2631 185 82.3 Plus
X 23542271 X 22152655..22152733 2553..2631 185 82.3 Plus
X 23542271 X 22162741..22162819 2553..2631 185 82.3 Plus
X 23542271 X 22167473..22167551 2553..2631 185 82.3 Plus
X 23542271 X 22172454..22172532 2553..2631 185 82.3 Plus
Blast to na_te.dros performed 2019-03-15 13:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
G4 3856 G4 G4_DM 3856bp 2434..2478 2554..2510 117 73.3 Minus

FI19008.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:03:36 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8974734..8974968 1..235 100 -> Plus
chrX 8975044..8975286 236..478 100 -> Plus
chrX 8975345..8975744 479..878 100 -> Plus
chrX 8975802..8975978 879..1055 100 -> Plus
chrX 8976040..8976202 1056..1218 100 -> Plus
chrX 8976272..8977675 1219..2626 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-08 10:56:32 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
APC4-RB 1..2328 124..2451 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:55:46 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
APC4-RA 1..2328 124..2451 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:19:11 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
APC4-RA 1..2328 124..2451 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 10:56:32 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
APC4-RA 1..2611 1..2616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:55:46 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
APC4-RA 1..2611 1..2616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:19:11 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
APC4-RA 1..2611 1..2616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:36 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
X 9084237..9084399 1056..1218 100 -> Plus
X 9083542..9083941 479..878 100 -> Plus
X 9082931..9083165 1..235 100 -> Plus
X 9083241..9083483 236..478 100 -> Plus
X 9083999..9084175 879..1055 100 -> Plus
X 9084469..9085861 1219..2616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:36 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
X 9084237..9084399 1056..1218 100 -> Plus
X 9083542..9083941 479..878 100 -> Plus
X 9082931..9083165 1..235 100 -> Plus
X 9083241..9083483 236..478 100 -> Plus
X 9083999..9084175 879..1055 100 -> Plus
X 9084469..9085861 1219..2616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:36 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
X 9084237..9084399 1056..1218 100 -> Plus
X 9083542..9083941 479..878 100 -> Plus
X 9082931..9083165 1..235 100 -> Plus
X 9083241..9083483 236..478 100 -> Plus
X 9083999..9084175 879..1055 100 -> Plus
X 9084469..9085861 1219..2616 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:55:46 Download gff for FI19008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8978270..8978432 1056..1218 100 -> Plus
arm_X 8976964..8977198 1..235 100 -> Plus
arm_X 8977274..8977516 236..478 100 -> Plus
arm_X 8977575..8977974 479..878 100 -> Plus
arm_X 8978032..8978208 879..1055 100 -> Plus
arm_X 8978502..8979894 1219..2616 99   Plus

FI19008.hyp Sequence

Translation from 123 to 2450

> FI19008.hyp
MAQTSSMKLLGARNMSCIVERMEWNNKMDLIAYGTEKGEVVIQRLNWQKI
VTFPTPGEDVRVRSLSWQMDETLLAVGYSNGKVALLDAESGTIISGLIYE
DDIKKVYFSKAINSQENLGTYTCNVKDKHRRFLPKLQPMTNIDPCLKTLD
QKSFPKGSPCFLVVIMRSGKVHLLLLGALQAGSIDLTQHILHPHEFDVYD
VRMNGDCNAIYALLRDGQELILLHFQNQVLQDCMAPMLELATHCAHILET
KNYINDTQQCLTEAWETVQLEMDNKLTRYANSQPYGVISAHFLELHVFGF
ATFEVEEFLFETLSEKGFKKIANSVDLSLSNLQSLVFKQLNGAAINMFYF
LNTIAGFGRMSHFFESLISPDVANEAMRACGGFVLKVHELQRTIDTLAYD
MKLFHAWMIFTILRLSHQEIPDDLVLTEEENIAMADFICAMEPELDDRSD
DEDELDSQSQTPPPARSKFNLERVGQYLDNAYLTQLYPRDPVQLWEEMVT
DNECLSNCKLFVPHDVNLSLVQQRDKMFNAIDAVFHKPTESISGSFKVSS
TVICNDLPPMEPGEDHRDRDLVTCTYYVNEASRTDMLACTISGQEAMILE
FSRAGDECVRCTRITLEPGLFTTSVSEDFCYLRFVDLQFYNESSLSILAQ
SINAGPGMRPHSFFIQFSLTAALNYSTQHRMGPLVKLSEATVSQSIHDIA
DGAAFKGLDGFSDMLAVSGSRKVATVLSDRKRKMTIFEMEIEEEEDDTEM
SQASFLDISKESVLAGVPDAEKQEA*

FI19008.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
APC4-PA 775 CG32707-PA 1..775 1..775 4020 100 Plus
APC4-PC 773 CG32707-PC 1..773 1..775 3996 99.7 Plus

FI19008.pep Sequence

Translation from 123 to 2450

> FI19008.pep
MAQTSSMKLLGARNMSCIVERMEWNNKMDLIAYGTEKGEVVIQRLNWQKI
VTFPTPGEDVRVRSLSWQMDETLLAVGYSNGKVALLDAESGTIISGLIYE
DDIKKVYFSKAINSQENLGTYTCNVKDKHRRFLPKLQPMTNIDPCLKTLD
QKSFPKGSPCFLVVIMRSGKVHLLLLGALQAGSIDLTQHILHPHEFDVYD
VRMNGDCNAIYALLRDGQELILLHFQNQVLQDCMAPMLELATHCAHILET
KNYINDTQQCLTEAWETVQLEMDNKLTRYANSQPYGVISAHFLELHVFGF
ATFEVEEFLFETLSEKGFKKIANSVDLSLSNLQSLVFKQLNGAAINMFYF
LNTIAGFGRMSHFFESLISPDVANEAMRACGGFVLKVHELQRTIDTLAYD
MKLFHAWMIFTILRLSHQEIPDDLVLTEEENIAMADFICAMEPELDDRSD
DEDELDSQSQTPPPARSKFNLERVGQYLDNAYLTQLYPRDPVQLWEEMVT
DNECLSNCKLFVPHDVNLSLVQQRDKMFNAIDAVFHKPTESISGSFKVSS
TVICNDLPPMEPGEDHRDRDLVTCTYYVNEASRTDMLACTISGQEAMILE
FSRAGDECVRCTRITLEPGLFTTSVSEDFCYLRFVDLQFYNESSLSILAQ
SINAGPGMRPHSFFIQFSLTAALNYSTQHRMGPLVKLSEATVSQSIHDIA
DGAAFKGLDGFSDMLAVSGSRKVATVLSDRKRKMTIFEMEIEEEEDDTEM
SQASFLDISKESVLAGVPDAEKQEA*

FI19008.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19190-PA 777 GF19190-PA 1..776 1..774 3466 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18284-PA 775 GG18284-PA 1..775 1..775 3615 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17803-PA 782 GH17803-PA 1..782 1..775 3088 77 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
APC4-PA 775 CG32707-PA 1..775 1..775 4020 100 Plus
APC4-PC 773 CG32707-PC 1..773 1..775 3996 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15143-PA 783 GI15143-PA 1..780 1..773 3115 78.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12977-PA 769 GL12977-PA 1..769 1..774 3280 81.8 Plus
Dper\GL23564-PA 700 GL23564-PA 1..669 1..670 2174 60.8 Plus
Dper\GL23565-PA 63 GL23565-PA 1..57 714..772 164 61 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17093-PA 769 GA17093-PA 1..769 1..774 3281 81.8 Plus
Dpse\GA26635-PA 776 GA26635-PA 1..770 1..772 2324 57 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13713-PA 775 GM13713-PA 1..775 1..775 4085 97.2 Plus
Dsec\GM17588-PA 76 GM17588-PA 1..44 714..757 179 84.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16927-PA 775 GD16927-PA 1..775 1..775 4076 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19003-PA 798 GJ19003-PA 1..787 1..765 3082 76.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25758-PA 779 GK25758-PA 1..776 1..773 3121 78 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15816-PA 775 GE15816-PA 1..775 1..775 3698 91.4 Plus