Clone FI19009 Report

Search the DGRC for FI19009

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:190
Well:9
Vector:pOT2
Associated Gene/TranscriptNtR-RA
Protein status:FI19009.pep: gold
Sequenced Size:1873

Clone Sequence Records

FI19009.complete Sequence

1873 bp assembled on 2012-03-08

GenBank Submission: BT133311.1

> FI19009.complete
AGGAGTAGAAGTCCAGGTCGATACGATGTACAACCTTATCAAGGGCTCCT
TGGCAACATACTGCTGCCTGTGCCTGCTACTGATATTGATTGACCCAGCG
GAATCGGGACAACTGTCAACGAGATTCAACGTGAGCTTCGCCCAGCTGGA
TTCCTGCGAAACCTACTCCGTTCCGAATACGGGCTATGGCTACCGGAGGT
TCTACATGCTGCGCGAGCTGAGCAACAACAACAGGAAGGCCGGAGAGCGG
CTGCACTTGAAATTCTACGTCCTGACCGCCATGGATGCGCACATCCTGCT
CTCGGTGACGAATCACCCGCGCCCAAATGATCGCGTTTACGAGATCGTGA
TAGGAGCCGGCGGAAATACGTTTTCCGCAATCCGGAATGCTATGGGAATG
AGGCGGGTGGCCACGAATCAAGAGCCGAACTTGGTATCGCTGTACGACCC
GACGCCAATTGAGATTGTCCAAAACCAGAATGGCGAGCTGTTTGTTTACA
TACCCGGCTTCAAGAAGGAGCCCCTGCTGCAGTTCATCGATGAAGCACCG
CTGGTCATCAACTATCTGAGTTTCAGCTCCTTTGGTTCCAATACGGCGCG
GTGGTTTTACGACTGTGGCTTCGATGGTTATGGGTCGGAAATTGCACCGA
TAGTGAAGGAGGAAACGAAGACGGAAAAACTGCTAAGCCATCTGAATATC
CAGGCGGAAAATGCAAGCATGCCGGCTAATCTCAGCTCCATATCGTTCCA
CTTCCAAACGCGCTCCCTCGCCTACGAGCAAACCAGTTCCTTGCTTCAGA
CCCGCATGCACATGATGATGCACTGGAGGGATAGTCGTCTTGTCTGGAAA
CCCGAGGACTTCGGCTCGCTGGAATCTTTCGAACATCCTGACCTTCGTAT
ATGGAAGCCGCATATGAACGTCCTCAACGGCGCCCTGCAATCCATGGGTC
AGGTCCTCCAATCCTATGAGCTGATGGTCTACGCCAACGGAAGCATCACC
CTGTACGCTCAAAACCTCCAGCTGGCCAGTTGGTGTGTGGACAGTGCCCG
AAACTGGCCAAGCGAGCGAGTGACTTGCGACATCGAGCTGGGTCTCAATG
GCCAGGAGGGGCAGGAGAATGTGGCGCTAATCTACGATGATCAGCGCAAG
CCGATTGCGCCCAATGAGCACGTGAACACGCCATCCGGCTGGTCGTTCAC
GCAAATGTCCGTGGTGCTGGTGGAGAACGATTCGCAAAGGCGATACAACC
CCAAGGGAATGATGCAGAAAATGACCGGCGATGTGGCAATTGAGTTCACG
CTGCAAAGGAATCGGAGCTTCTACATGACCGTCTTCTATTTGCCGTTGAT
TGCCTGCCAGATGTTCCTGATTTTGTCCTTTGTACTGCGTTCTACTCGTA
GGAGTTCCCTCATTCTCATCGCCTTGCTGATTGCCGCCTGGGGTTTAATG
TACATGACGCGCTACGCCTCTCCGCATTATGTGCCGCCCATGATGACTGC
ATATAAAGTCATCATGATGACCACCACCTATTGCTACATTCTGCACATCT
GCATTATATGGCTGGATCTATATCCACCCAGATCGAAGGCTCCTGGCTGG
CTGGTTAGGGTGATTAACTCCAATGTTCTGCGATGCATTCTGGGATTGAG
ATTTTCGGATTCTACCGACTATTGCGACATTCAGGAGAATCCCTGGCACC
ATATGGCCAAGATCCTGAACAACCTGAGTTCAATCTTGGTCATTATAACC
TTTGCCATCGTAGATATTACGAGTGGGTTTTGAAAAACAGAATTTTTCTT
TATTGTGCATTTGAGAGAATATTAATGGTTCTTAAATAAATAAGAAGTAA
ACAGAAAAAAAAAAAAAAAAAAA

FI19009.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18015387..18015919 820..1352 2635 99.6 Plus
chr2R 21145070 chr2R 18014250..18014596 1..347 1630 98 Plus
chr2R 21145070 chr2R 18016421..18016614 1661..1854 955 99.5 Plus
chr2R 21145070 chr2R 18015127..18015315 632..820 945 100 Plus
chr2R 21145070 chr2R 18016194..18016360 1494..1660 820 99.4 Plus
chr2R 21145070 chr2R 18014893..18015046 480..633 770 100 Plus
chr2R 21145070 chr2R 18015980..18016121 1352..1493 680 98.6 Plus
chr2R 21145070 chr2R 18014701..18014833 347..479 650 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22128953..22129485 820..1352 2665 100 Plus
2R 25286936 2R 22127830..22128176 1..347 1735 100 Plus
2R 25286936 2R 22129991..22130185 1661..1855 975 100 Plus
2R 25286936 2R 22128693..22128881 632..820 945 100 Plus
2R 25286936 2R 22129764..22129930 1494..1660 835 100 Plus
2R 25286936 2R 22128473..22128626 480..633 770 100 Plus
2R 25286936 2R 22129550..22129691 1352..1493 710 100 Plus
2R 25286936 2R 22128281..22128413 347..479 665 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:02:33 has no hits.

FI19009.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:03:43 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18014250..18014596 1..347 97 -> Plus
chr2R 18014702..18014833 348..479 99 -> Plus
chr2R 18014893..18015045 480..632 100 -> Plus
chr2R 18015128..18015315 633..820 100 -> Plus
chr2R 18015388..18015919 821..1352 99 -> Plus
chr2R 18015981..18016121 1353..1493 98 -> Plus
chr2R 18016194..18016360 1494..1660 99 -> Plus
chr2R 18016421..18016614 1661..1854 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-08 10:56:33 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
NtR-RA 1..1758 26..1783 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:55:54 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
NtR-RA 1..1758 26..1783 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:19:25 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
NtR-RA 1..1758 26..1783 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 10:56:33 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
NtR-RA 23..1876 1..1854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:55:54 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
NtR-RA 23..1876 1..1854 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:19:25 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
NtR-RA 23..1876 1..1854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:43 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22127830..22128176 1..347 100 -> Plus
2R 22128282..22128413 348..479 100 -> Plus
2R 22128473..22128625 480..632 100 -> Plus
2R 22128694..22128881 633..820 100 -> Plus
2R 22128954..22129485 821..1352 100 -> Plus
2R 22129551..22129691 1353..1493 100 -> Plus
2R 22129764..22129930 1494..1660 100 -> Plus
2R 22129991..22130184 1661..1854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:43 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22127830..22128176 1..347 100 -> Plus
2R 22128282..22128413 348..479 100 -> Plus
2R 22128473..22128625 480..632 100 -> Plus
2R 22128694..22128881 633..820 100 -> Plus
2R 22128954..22129485 821..1352 100 -> Plus
2R 22129551..22129691 1353..1493 100 -> Plus
2R 22129764..22129930 1494..1660 100 -> Plus
2R 22129991..22130184 1661..1854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:43 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22127830..22128176 1..347 100 -> Plus
2R 22128282..22128413 348..479 100 -> Plus
2R 22128473..22128625 480..632 100 -> Plus
2R 22128694..22128881 633..820 100 -> Plus
2R 22128954..22129485 821..1352 100 -> Plus
2R 22129551..22129691 1353..1493 100 -> Plus
2R 22129764..22129930 1494..1660 100 -> Plus
2R 22129991..22130184 1661..1854 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:55:54 Download gff for FI19009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18016199..18016386 633..820 100 -> Plus
arm_2R 18015335..18015681 1..347 100 -> Plus
arm_2R 18015787..18015918 348..479 100 -> Plus
arm_2R 18015978..18016130 480..632 100 -> Plus
arm_2R 18016459..18016990 821..1352 100 -> Plus
arm_2R 18017056..18017196 1353..1493 100 -> Plus
arm_2R 18017269..18017435 1494..1660 100 -> Plus
arm_2R 18017496..18017689 1661..1854 100   Plus

FI19009.hyp Sequence

Translation from 0 to 1782

> FI19009.hyp
GVEVQVDTMYNLIKGSLATYCCLCLLLILIDPAESGQLSTRFNVSFAQLD
SCETYSVPNTGYGYRRFYMLRELSNNNRKAGERLHLKFYVLTAMDAHILL
SVTNHPRPNDRVYEIVIGAGGNTFSAIRNAMGMRRVATNQEPNLVSLYDP
TPIEIVQNQNGELFVYIPGFKKEPLLQFIDEAPLVINYLSFSSFGSNTAR
WFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFH
FQTRSLAYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRI
WKPHMNVLNGALQSMGQVLQSYELMVYANGSITLYAQNLQLASWCVDSAR
NWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSFT
QMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLI
ACQMFLILSFVLRSTRRSSLILIALLIAAWGLMYMTRYASPHYVPPMMTA
YKVIMMTTTYCYILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLR
FSDSTDYCDIQENPWHHMAKILNNLSSILVIITFAIVDITSGF*

FI19009.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
NtR-PA 585 CG6698-PA 1..585 9..593 3085 100 Plus
NtR-PB 578 CG6698-PB 1..578 9..593 3033 98.8 Plus

FI19009.pep Sequence

Translation from 1 to 1782

> FI19009.pep
GVEVQVDTMYNLIKGSLATYCCLCLLLILIDPAESGQLSTRFNVSFAQLD
SCETYSVPNTGYGYRRFYMLRELSNNNRKAGERLHLKFYVLTAMDAHILL
SVTNHPRPNDRVYEIVIGAGGNTFSAIRNAMGMRRVATNQEPNLVSLYDP
TPIEIVQNQNGELFVYIPGFKKEPLLQFIDEAPLVINYLSFSSFGSNTAR
WFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFH
FQTRSLAYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRI
WKPHMNVLNGALQSMGQVLQSYELMVYANGSITLYAQNLQLASWCVDSAR
NWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSFT
QMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLI
ACQMFLILSFVLRSTRRSSLILIALLIAAWGLMYMTRYASPHYVPPMMTA
YKVIMMTTTYCYILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLR
FSDSTDYCDIQENPWHHMAKILNNLSSILVIITFAIVDITSGF*

FI19009.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13290-PA 587 GF13290-PA 10..586 22..591 2000 62.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22164-PA 585 GG22164-PA 5..584 9..592 2675 85.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20553-PA 584 GH20553-PA 29..561 41..574 1833 58.7 Plus
Dgri\GH12959-PA 176 GH12959-PA 1..153 422..574 515 58.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
NtR-PA 585 CG6698-PA 1..585 9..593 3085 100 Plus
NtR-PB 578 CG6698-PB 1..578 9..593 3033 98.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18822-PA 463 GI18822-PA 1..459 131..591 1510 56.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11779-PA 582 GL11779-PA 23..581 32..592 2031 65.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19791-PA 582 GA19791-PA 23..581 32..592 2034 65.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15885-PA 585 GM15885-PA 1..585 9..593 2909 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11647-PA 585 GD11647-PA 1..585 9..593 2929 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21849-PA 580 GJ21849-PA 27..574 41..589 1933 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19635-PA 579 GK19635-PA 6..575 20..589 1931 60.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12244-PA 581 GE12244-PA 1..581 9..593 2808 89.8 Plus