Clone FI19317 Report

Search the DGRC for FI19317

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:193
Well:17
Vector:pOTB7
Associated Gene/TranscriptAxn-RD
Protein status:FI19317.pep: gold
Sequenced Size:2823

Clone Sequence Records

FI19317.complete Sequence

2823 bp assembled on 2012-01-30

GenBank Submission: BT133166.1

> FI19317.complete
CCGAGAACACGTTCGTTGATCGTAACTGGTAACTTAAGCGTAATATTAGG
TAAATATTTAGCAGCGATCGCTTGTCGTGGGAAGCCAATTTAGAGTGGCA
TGAGTGGCCATCCATCGGGAATCCGGAAACATGATGATAATGAGTGTAGT
GGCCCACGACCACCAGTACCCGGAGAAGAGAGCCGTGTTAAAAAGATGAC
CGAAGGGGTAGCAGATACCTCGAAGAATTCGTCGCCATCCTACCTGAACT
GGGCCCGGACGCTGAACCACCTGCTGGAGGACCGCGATGGGGTCGAGCTC
TTCAAGAAGTACGTGGAGGAGGAGGCGCCCGCCTACAACGACCACCTCAA
CTTCTACTTCGCCTGCGAGGGCCTCAAGCAGCAGACGGATCCGGAGAAGA
TCAAGCAGATAATCGGAGCCATCTACAGATTCCTGCGCAAGAGTCAGCTG
TCCATCTCCGATGACCTGCGCGCCCAGATCAAGGCCATCAAGACGAATCC
CGAGATCCCGCTCAGCCCACACATATTCGATCCCATGCAGCGCCATGTGG
AGGTCACCATCCGCGACAACATCTACCCCACGTTTCTCTGCTCCGAGATG
TACATCCTCTACATCCAGCAGATGTCCGCCCAGCAGGAGCGCTGCACCAG
CAGCGGCGCCACGGGATCGGGAAGTGCCGGGAGTAGTGGCAGCGGCGGCA
GCAGCCTAGCGGGCGCCTGTGCCCTGCCACCGACCACCGCGTCCGGCAAG
CAGCAGCTCCCGCAGCTGGTGCCGCCCGGTGCCTTCATCAACCTGCCGGT
GAGCAGCGTGAGCGGCCCGCCAGCTGGCACGTGCAGTGCCAGCGGCAGTG
TGTACGGTCCCTCGACTTCGGCCAGCTCCAGCGGCTCAATAAGCGCCACC
GACACACTGCCCCGCAGCTCCACGCTGCCCACGCTGCACGAGGACTCGGT
GCTGTCGCTCTGCGACGACTTCGAGAAGGTGCAGATGCAGGAAGGCGGCG
GATCCCTCGGCTCTGGATCTGTGGGCGCGGGTGCGCGAGCGCCCGACTAC
CCGATTCGCCTCACGCGGGACCTACTAATAGCAACTCAGAAAAGAAGACT
GGAAATCCGACCTCCTGGGGACGGTCGCCCGTACATCCAACGCAGACACA
GCTCCACGGAGAGCAAGGCGATCCGCCAGAGCGCGATGGCAAACAAGGAG
ACCAACACCTTTCAGGTGATACCTCGCACACAACGACTACATTCGAACGA
GCACAGACCACTGAAGGAAGAGGAGCTGGTGTCCTTGCTGATACCCAAGT
TGGAGGAAGTGAAGCGAAAGCGAGACCTGGAGGAAAGAGCTCGCGAGAGA
AATCCCGGTGCTGCTCTGCTTACCAACGAAAGATCCAGTGCCAGCGATCG
AGCCTTCGCCGAGGCGATACGAGAGAAGTTTGCACTGGACGAAGACAACG
ACCAAGACATTCTGGACCAGCATGTGTCGCGGGTGTGGAAGGACCAAACG
CCGCACCGCTCGCCGGGAACGATGTCGCCCTGCCCACCCATACCGTCGCG
CCGACGTACAGCCACCCACGATTCCGGAATGGTCAGCGATGGCGCCATGA
GTCTAAGCGGACACTCAATGAAGCACTCAAAGTCCATGCCGGATCACAGT
TCCTGCTCGAGGAAGTTGACAAACAAATGGCCTTCCATGAACACAGACAG
TGGCATTAGCATGTTCTCGGCCGACACTGTTACCAAGTACAAAGATGCGA
GTTCTCGATCTGGCTCTAGCACGGCCTCGAAACTGGAGGAGGCGAAACGA
AGACTGGAAGACGAGCCGCGGCGCTCTCGTCGATACGCCCAACCGCCGAT
GCAGCACCTGTCGCAACAGCCACTGGCCTCCTTCAGCAGCAGCAGCAGTG
GCGGCAGCATCAGCCTGCCACACCAGCCACCGCCTCTGCCGGCCAAGCCG
CCGGAGACGATCGTGGTGTTCTCGTTCTGCGAGGAGCCAGTGCCGTACAG
GATAAAAATACCCGGTACTCAGCCAACCCTGCGTCAGTTTAAGGACTATC
TGCCCAGAAGAGGTCACTTTAGGTTCTTCTTCAAGACGCACTGCGAGGAC
CCGGACAGTCCAGTGATTCAGGAAGAGATTGTTAACGACTCCGACATACT
GCCGCTATTCGGAGACAAAGCGATGGGTCTTGTCAAGCCATCCGATTAAT
ATTAAGCATTTAGCGTAGATTTTGTATTAAGGCAAATCGTGAGTGTGGCT
TGGTGCACTGTTGCACTCGGCAAGATACGAATACGATAACGAACGCACCA
AGTGTACGCATCTTAGAGCTAGCAACTGGAGAAGCTATTTCCGACAAATC
AAAAGCTATATATGTACGGGCGACCGGCTTTTGTAAGCATCACAAACTAC
TCTCTGCGGGGGCAATGTATTTTTCTGTACAACAAAAACTGATCTATTCA
CCAGCCACCCAAACAAAGGTGGTGGTTGGTTCTACGTTTGTAAATCCATA
ACGAGAATATTCGGAGCTATTGGTAGGAGAGAACGATCCTCTTTATGTTC
ACACCTTGGCGGCCGTACGTTCAGAGTCCGAAAAGCGTTTCAGTCCCGCA
GCCAGGGACTGAGATCTTTAGGAACTACTGCACAAAATCACATTATTAGG
AAGATTTATGGGTTTACCTCGATTGGGATTTGTTTGTTACCTTTTACTAA
CTACGGACTGCCTGCAATAAATTTTGTTAATATTTTTGTAATGTGCATTT
TATGATGATGATATGATGATATTAACAAAGTTCTATTCAACTCGACAAAA
AATCAAAAAAAAAAAAAAAAAAA

FI19317.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25856600..25857334 2070..2804 3660 99.9 Plus
chr3R 27901430 chr3R 25853832..25854528 423..1119 3410 99.3 Plus
chr3R 27901430 chr3R 25856218..25856542 1750..2074 1625 100 Plus
chr3R 27901430 chr3R 25855694..25855955 1346..1607 1310 100 Plus
chr3R 27901430 chr3R 25853525..25853759 194..428 1145 99.1 Plus
chr3R 27901430 chr3R 25853267..25853461 1..195 975 100 Plus
chr3R 27901430 chr3R 25856014..25856158 1607..1751 725 100 Plus
chr3R 27901430 chr3R 25855497..25855631 1213..1347 675 100 Plus
chr3R 27901430 chr3R 25855345..25855444 1118..1217 500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30034185..30034923 2070..2808 3680 99.9 Plus
3R 32079331 3R 30031417..30032113 423..1119 3410 99.3 Plus
3R 32079331 3R 30033803..30034127 1750..2074 1625 100 Plus
3R 32079331 3R 30033279..30033540 1346..1607 1310 100 Plus
3R 32079331 3R 30031110..30031344 194..428 1145 99.1 Plus
3R 32079331 3R 30030852..30031046 1..195 975 100 Plus
3R 32079331 3R 30033599..30033743 1607..1751 725 100 Plus
3R 32079331 3R 30033082..30033216 1213..1347 675 100 Plus
3R 32079331 3R 30032930..30033029 1118..1217 500 100 Plus
Blast to na_te.dros performed 2019-03-15 12:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2242..2397 1769..1930 183 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6814 1851..1941 140 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6824 1840..1914 134 65.8 Plus
gypsy10 6006 gypsy10 GYPSY10 6006bp 4388..4486 1988..2080 130 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6824 1840..1933 129 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6853 1840..1941 124 60.8 Plus

FI19317.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:58:28 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25856220..25856540 1752..2072 90 -> Plus
chr3R 25853267..25853461 1..195 100 -> Plus
chr3R 25853527..25853759 196..428 99 -> Plus
chr3R 25853838..25854527 429..1118 99 -> Plus
chr3R 25855346..25855442 1119..1215 100 -> Plus
chr3R 25855500..25855631 1216..1347 100 -> Plus
chr3R 25855696..25855954 1348..1606 100 -> Plus
chr3R 25856014..25856158 1607..1751 100 -> Plus
chr3R 25856603..25857334 2073..2804 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-30 12:38:01 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
Axn-RD 1..2100 100..2199 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:06:02 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
Axn-RD 1..2100 100..2199 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:17:25 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
Axn-RD 1..2100 100..2199 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 12:38:01 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
Axn-RD 1356..4159 1..2804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:06:02 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
Axn-RD 1358..4161 1..2804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:17:25 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
Axn-RD 1358..4161 1..2804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:58:28 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30033805..30034125 1752..2072 100 -> Plus
3R 30030852..30031046 1..195 100 -> Plus
3R 30031112..30031344 196..428 99 -> Plus
3R 30031423..30032112 429..1118 99 -> Plus
3R 30032931..30033027 1119..1215 100 -> Plus
3R 30033085..30033216 1216..1347 100 -> Plus
3R 30033281..30033539 1348..1606 100 -> Plus
3R 30033599..30033743 1607..1751 100 -> Plus
3R 30034188..30034919 2073..2804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:58:28 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30033805..30034125 1752..2072 100 -> Plus
3R 30030852..30031046 1..195 100 -> Plus
3R 30031112..30031344 196..428 99 -> Plus
3R 30031423..30032112 429..1118 99 -> Plus
3R 30032931..30033027 1119..1215 100 -> Plus
3R 30033085..30033216 1216..1347 100 -> Plus
3R 30033281..30033539 1348..1606 100 -> Plus
3R 30033599..30033743 1607..1751 100 -> Plus
3R 30034188..30034919 2073..2804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:58:28 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30033805..30034125 1752..2072 100 -> Plus
3R 30030852..30031046 1..195 100 -> Plus
3R 30031112..30031344 196..428 99 -> Plus
3R 30031423..30032112 429..1118 99 -> Plus
3R 30032931..30033027 1119..1215 100 -> Plus
3R 30033085..30033216 1216..1347 100 -> Plus
3R 30033281..30033539 1348..1606 100 -> Plus
3R 30033599..30033743 1607..1751 100 -> Plus
3R 30034188..30034919 2073..2804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:06:02 Download gff for FI19317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25859527..25859847 1752..2072 100 -> Plus
arm_3R 25856574..25856768 1..195 100 -> Plus
arm_3R 25856834..25857066 196..428 99 -> Plus
arm_3R 25857145..25857834 429..1118 99 -> Plus
arm_3R 25858653..25858749 1119..1215 100 -> Plus
arm_3R 25858807..25858938 1216..1347 100 -> Plus
arm_3R 25859003..25859261 1348..1606 100 -> Plus
arm_3R 25859321..25859465 1607..1751 100 -> Plus
arm_3R 25859910..25860641 2073..2804 99   Plus

FI19317.hyp Sequence

Translation from 99 to 2198

> FI19317.hyp
MSGHPSGIRKHDDNECSGPRPPVPGEESRVKKMTEGVADTSKNSSPSYLN
WARTLNHLLEDRDGVELFKKYVEEEAPAYNDHLNFYFACEGLKQQTDPEK
IKQIIGAIYRFLRKSQLSISDDLRAQIKAIKTNPEIPLSPHIFDPMQRHV
EVTIRDNIYPTFLCSEMYILYIQQMSAQQERCTSSGATGSGSAGSSGSGG
SSLAGACALPPTTASGKQQLPQLVPPGAFINLPVSSVSGPPAGTCSASGS
VYGPSTSASSSGSISATDTLPRSSTLPTLHEDSVLSLCDDFEKVQMQEGG
GSLGSGSVGAGARAPDYPIRLTRDLLIATQKRRLEIRPPGDGRPYIQRRH
SSTESKAIRQSAMANKETNTFQVIPRTQRLHSNEHRPLKEEELVSLLIPK
LEEVKRKRDLEERARERNPGAALLTNERSSASDRAFAEAIREKFALDEDN
DQDILDQHVSRVWKDQTPHRSPGTMSPCPPIPSRRRTATHDSGMVSDGAM
SLSGHSMKHSKSMPDHSSCSRKLTNKWPSMNTDSGISMFSADTVTKYKDA
SSRSGSSTASKLEEAKRRLEDEPRRSRRYAQPPMQHLSQQPLASFSSSSS
GGSISLPHQPPPLPAKPPETIVVFSFCEEPVPYRIKIPGTQPTLRQFKDY
LPRRGHFRFFFKTHCEDPDSPVIQEEIVNDSDILPLFGDKAMGLVKPSD*

FI19317.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Axn-PD 699 CG7926-PD 1..699 1..699 3644 100 Plus
Axn-PF 693 CG7926-PF 1..693 1..699 3600 99.1 Plus
Axn-PB 745 CG7926-PB 1..745 1..699 3587 93.8 Plus
Axn-PA 745 CG7926-PA 1..745 1..699 3587 93.8 Plus
Axn-PG 739 CG7926-PG 1..739 1..699 3543 93 Plus

FI19317.pep Sequence

Translation from 99 to 2198

> FI19317.pep
MSGHPSGIRKHDDNECSGPRPPVPGEESRVKKMTEGVADTSKNSSPSYLN
WARTLNHLLEDRDGVELFKKYVEEEAPAYNDHLNFYFACEGLKQQTDPEK
IKQIIGAIYRFLRKSQLSISDDLRAQIKAIKTNPEIPLSPHIFDPMQRHV
EVTIRDNIYPTFLCSEMYILYIQQMSAQQERCTSSGATGSGSAGSSGSGG
SSLAGACALPPTTASGKQQLPQLVPPGAFINLPVSSVSGPPAGTCSASGS
VYGPSTSASSSGSISATDTLPRSSTLPTLHEDSVLSLCDDFEKVQMQEGG
GSLGSGSVGAGARAPDYPIRLTRDLLIATQKRRLEIRPPGDGRPYIQRRH
SSTESKAIRQSAMANKETNTFQVIPRTQRLHSNEHRPLKEEELVSLLIPK
LEEVKRKRDLEERARERNPGAALLTNERSSASDRAFAEAIREKFALDEDN
DQDILDQHVSRVWKDQTPHRSPGTMSPCPPIPSRRRTATHDSGMVSDGAM
SLSGHSMKHSKSMPDHSSCSRKLTNKWPSMNTDSGISMFSADTVTKYKDA
SSRSGSSTASKLEEAKRRLEDEPRRSRRYAQPPMQHLSQQPLASFSSSSS
GGSISLPHQPPPLPAKPPETIVVFSFCEEPVPYRIKIPGTQPTLRQFKDY
LPRRGHFRFFFKTHCEDPDSPVIQEEIVNDSDILPLFGDKAMGLVKPSD*

FI19317.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22991-PA 749 GF22991-PA 1..749 1..699 2978 84.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11721-PA 739 GG11721-PA 1..739 1..699 3224 92.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19169-PA 750 GH19169-PA 3..750 4..699 2763 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Axn-PD 699 CG7926-PD 1..699 1..699 3644 100 Plus
Axn-PF 693 CG7926-PF 1..693 1..699 3600 99.1 Plus
Axn-PB 745 CG7926-PB 1..745 1..699 3587 93.8 Plus
Axn-PA 745 CG7926-PA 1..745 1..699 3587 93.8 Plus
Axn-PG 739 CG7926-PG 1..739 1..699 3543 93 Plus
Axn-PC 739 CG7926-PC 1..739 1..699 3543 93 Plus
Axn-PE 110 CG7926-PE 1..110 1..110 595 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24204-PA 756 GI24204-PA 3..756 4..699 2732 77.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14019-PA 765 GL14019-PA 1..765 1..699 2846 80.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20694-PA 762 GA20694-PA 1..762 1..699 2853 80.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12852-PA 745 GM12852-PA 1..745 1..699 3207 93.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Axn-PA 367 GD21494-PA 157..366 341..550 1114 99.5 Plus
Dsim\Axn-PA 367 GD21494-PA 1..109 1..109 614 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10774-PA 746 GJ10774-PA 3..746 4..699 2732 77.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13864-PA 748 GK13864-PA 1..748 1..699 2720 77.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10849-PA 747 GE10849-PA 1..747 1..699 3182 92.4 Plus