Clone FI19336 Report

Search the DGRC for FI19336

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:193
Well:36
Vector:pOTB7
Associated Gene/TranscriptCG4712-RB
Protein status:FI19336.pep: gold
Sequenced Size:2103

Clone Sequence Records

FI19336.complete Sequence

2103 bp assembled on 2012-01-13

GenBank Submission: BT133017.1

> FI19336.complete
GTAAATATATACATACACGATGGAAACGGAGAATAATGAAGAACCTCAGA
TTGATTTGTTGGAGGAAAACGAAGCGGTACGAAGCTTGGCTGATGAAGTT
CTCTCGAGATTTTCAGGCGATAGTAAAAAGTCTGTTTCGGTGAATATTTC
AATGGTTTCTATGTCATCAAATGAAAACAGTGAAGAAAGACTGAAAATCA
TTAGAAAGGAGGAAAGAAAATTGGCAATAAAGGACATCATGAATCGACTA
AAGGAGCGTGACGCGGAGGAGATGAAAATGAAGAAGTCCGGCGAACAGGA
GGGGGACCAAAGGGAAGACGAAATGGCCAGCAAGTCACAAGACAGTATTC
AACGGCACATGTCCATTTCACAAGTGGAGGAGCAGGACGATGAAACATTG
CTGTGGACCAAGCTGGGTGAGGATATCGACAGTGACAACAGAAGAACCAC
GGATATTGCTCCCGCAGCAGACACTTTGGACGCAGTTAATGCCGAGGACG
AAGACATGCTCGATCTCATCGAAACCCCATCGGAATCTGATTCAGAAGCA
CCAGTGACCGAGAGGTCCAAGAGCATAGATCCCATGAAAGTGGCCGTTAA
ATCTTTAATGCTGGTGCCCAGTCTGTCGGATATTTCGCTGCCAAGTGCGC
CGCCCACGTCAAGAAAGTCTTCCCATTCTATTAAATCGAACAGATCATTA
ATTTTTAAAAGTTCCCCAACCGATGGCAATTCAAGCTTCGATACCGAAGA
GTCGGAAGAAGAATCCACCATTGGCCCCATTGATCCGCGTACTCCAATGG
ATCAATTGTACGACTCACTATCGATTTGCGAGTCTTTGGCACCCATAAAA
GACGAATTTTCAAGAACAACAGCTTTGGAAAAAGAAAGAAATGATTACAT
GGGCTTTGAACAGTTGTTTACAGTAACAACGGAACACCTTGAAACGGACG
AAATCGATGTGGCAGCCCAACTGAGGACTATAGAGACAAGCCAGGTTATT
TCTGAATTTATAAACCATTTGATACATAAGGTAGTCATGCCAGAGCATCG
GGGTACTGAGGAATATATTCGGGTGCGACTGGACAAAGAAAAGCTGCTGG
TCGCTCTGCAGAATGAGGTGCATGATTACACAAGTGTAAGGGATCATAAC
AAACAGCTGGAGGAGCGAATGGTAGATTACTTCCGACGCACGAAAAACTT
CCGATACTTTGACCGCCTAACGCCGAACGCCGAGTCAACCTACTCCCGTC
GCCTTGATCACGCCCTGACCTATCTGTCCTATGGTCAAGAGCGCCTCATC
AGGGTAAGGGAGAAATATGGCATTCTAATGACCACTGCGTTTTTGGACCT
CGCCAACGCCATGAACATCGTTCTCAGCACGGAGCATCATCTCGAGCAGA
CGTTAAAACGCATCCTGGTTCGTCCGGACGCCGAGACCGATTTCCTCAAG
CGCCTGGTTGCCCGCGAACTCCGACTTATGGCCGACCATCGGAATCAAAT
TAGCGATGCCCGGCTGTTGCTCATGTCGCAGAAACACACCTTGGCCCGCA
TCTTAGAAAAAATAAGAGATGTAGAAACGGTTTGCGACGGTGTGAGCTTG
AATGACTTTATTTCCGTGCAAAACAAAACGATCGGCCTAGAAAAGAAGAT
TGAAGAGCGAAATATTGAATTAAAAAGACAGCGCAGGCTCTACCACACCG
AACTGCATATGACTAAGCACAATCGAGAGAAGTCCCACGAGCTTAAGAAC
AAAATTCACGTTCTTAAAGATAACCTGCTGGAAAAGCACAAGTTGAAAAA
TAAACTAAAATCCGAGCTGTGTCGCCGAAAACTGGAGCACAAGGCTATTA
GGCGCCGGATGAGAGATTTGACATGCCAGGGTGGTATCCTGGCTATGCCC
GCATTGATGTATGACTACGATCGAACTGTCGCCTATGTTCGTGAAAAGGA
GAAAATGGTCTCGAGTCTCCGGGAAACCCTAAAATCACTTACCAATCAGC
TGCAAAGTTTGATGTCACCTCGAAAAAAGAGCTCGATTATTTAATAGGGC
TATTACCACTTTTCAACCAAATACATTTTTCCACAAAAAAAAAAAAAAAA
AAA

FI19336.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9137370..9138927 1558..1 7775 99.9 Minus
chr2R 21145070 chr2R 9136264..9136694 2084..1654 2140 99.8 Minus
chr2R 21145070 chr2R 9136762..9136858 1655..1559 485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13250009..13251566 1558..1 7790 100 Minus
2R 25286936 2R 13248898..13249333 2089..1654 2180 100 Minus
2R 25286936 2R 13249401..13249497 1655..1559 485 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:24:24 has no hits.

FI19336.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:25:26 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9136264..9136692 1656..2084 99 <- Minus
chr2R 9136762..9136858 1559..1655 100 <- Minus
chr2R 9137370..9138927 1..1558 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-01-13 11:26:34 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4712-RB 1..2025 20..2044 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:57:59 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4712-RB 1..2025 20..2044 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 19:58:15 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4712-RB 1..2025 20..2044 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-13 11:26:33 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4712-RB 144..2227 1..2084 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:57:59 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4712-RB 144..2227 1..2084 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 19:58:15 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4712-RB 159..2242 1..2084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:26 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13248903..13249331 1656..2084 100 <- Minus
2R 13249401..13249497 1559..1655 100 <- Minus
2R 13250009..13251566 1..1558 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:26 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13248903..13249331 1656..2084 100 <- Minus
2R 13249401..13249497 1559..1655 100 <- Minus
2R 13250009..13251566 1..1558 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:25:26 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13248903..13249331 1656..2084 100 <- Minus
2R 13249401..13249497 1559..1655 100 <- Minus
2R 13250009..13251566 1..1558 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:57:59 Download gff for FI19336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9136408..9136836 1656..2084 100 <- Minus
arm_2R 9136906..9137002 1559..1655 100 <- Minus
arm_2R 9137514..9139071 1..1558 100   Minus

FI19336.hyp Sequence

Translation from 19 to 2043

> FI19336.hyp
METENNEEPQIDLLEENEAVRSLADEVLSRFSGDSKKSVSVNISMVSMSS
NENSEERLKIIRKEERKLAIKDIMNRLKERDAEEMKMKKSGEQEGDQRED
EMASKSQDSIQRHMSISQVEEQDDETLLWTKLGEDIDSDNRRTTDIAPAA
DTLDAVNAEDEDMLDLIETPSESDSEAPVTERSKSIDPMKVAVKSLMLVP
SLSDISLPSAPPTSRKSSHSIKSNRSLIFKSSPTDGNSSFDTEESEEEST
IGPIDPRTPMDQLYDSLSICESLAPIKDEFSRTTALEKERNDYMGFEQLF
TVTTEHLETDEIDVAAQLRTIETSQVISEFINHLIHKVVMPEHRGTEEYI
RVRLDKEKLLVALQNEVHDYTSVRDHNKQLEERMVDYFRRTKNFRYFDRL
TPNAESTYSRRLDHALTYLSYGQERLIRVREKYGILMTTAFLDLANAMNI
VLSTEHHLEQTLKRILVRPDAETDFLKRLVARELRLMADHRNQISDARLL
LMSQKHTLARILEKIRDVETVCDGVSLNDFISVQNKTIGLEKKIEERNIE
LKRQRRLYHTELHMTKHNREKSHELKNKIHVLKDNLLEKHKLKNKLKSEL
CRRKLEHKAIRRRMRDLTCQGGILAMPALMYDYDRTVAYVREKEKMVSSL
RETLKSLTNQLQSLMSPRKKSSII*

FI19336.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4712-PB 674 CG4712-PB 1..674 1..674 3379 100 Plus
CG4712-PA 647 CG4712-PA 33..647 60..674 3090 99.7 Plus
CG4714-PA 732 CG4714-PA 104..724 49..661 715 32.2 Plus
CG31231-PA 679 CG31231-PA 51..672 28..672 428 25 Plus
CG31784-PC 763 CG31784-PC 212..728 134..664 319 25.4 Plus

FI19336.pep Sequence

Translation from 19 to 2043

> FI19336.pep
METENNEEPQIDLLEENEAVRSLADEVLSRFSGDSKKSVSVNISMVSMSS
NENSEERLKIIRKEERKLAIKDIMNRLKERDAEEMKMKKSGEQEGDQRED
EMASKSQDSIQRHMSISQVEEQDDETLLWTKLGEDIDSDNRRTTDIAPAA
DTLDAVNAEDEDMLDLIETPSESDSEAPVTERSKSIDPMKVAVKSLMLVP
SLSDISLPSAPPTSRKSSHSIKSNRSLIFKSSPTDGNSSFDTEESEEEST
IGPIDPRTPMDQLYDSLSICESLAPIKDEFSRTTALEKERNDYMGFEQLF
TVTTEHLETDEIDVAAQLRTIETSQVISEFINHLIHKVVMPEHRGTEEYI
RVRLDKEKLLVALQNEVHDYTSVRDHNKQLEERMVDYFRRTKNFRYFDRL
TPNAESTYSRRLDHALTYLSYGQERLIRVREKYGILMTTAFLDLANAMNI
VLSTEHHLEQTLKRILVRPDAETDFLKRLVARELRLMADHRNQISDARLL
LMSQKHTLARILEKIRDVETVCDGVSLNDFISVQNKTIGLEKKIEERNIE
LKRQRRLYHTELHMTKHNREKSHELKNKIHVLKDNLLEKHKLKNKLKSEL
CRRKLEHKAIRRRMRDLTCQGGILAMPALMYDYDRTVAYVREKEKMVSSL
RETLKSLTNQLQSLMSPRKKSSII*

FI19336.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11197-PA 673 GF11197-PA 78..662 61..670 792 35.9 Plus
Dana\GF11196-PA 713 GF11196-PA 361..702 319..661 589 36.6 Plus
Dana\GF16914-PA 679 GF16914-PA 338..666 329..661 294 27.6 Plus
Dana\GF15112-PA 683 GF15112-PA 313..639 321..651 201 24.9 Plus
Dana\GF14563-PA 251 GF14563-PA 28..220 458..650 176 25.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22507-PA 655 GG22507-PA 1..654 1..674 2215 68.7 Plus
Dere\GG22506-PA 733 GG22506-PA 249..731 187..668 632 36 Plus
Dere\GG23013-PA 674 GG23013-PA 328..660 329..664 353 29 Plus
Dere\GG21756-PA 807 GG21756-PA 397..723 321..651 206 28.4 Plus
Dere\GG13080-PA 196 GG13080-PA 1..165 487..651 155 27.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20278-PA 681 GH20278-PA 335..676 322..664 587 41 Plus
Dgri\GH11502-PA 713 GH11502-PA 353..691 322..661 429 31.1 Plus
Dgri\GH22180-PA 546 GH22180-PA 353..543 322..513 275 34.2 Plus
Dgri\GH10087-PA 570 GH10087-PA 207..541 330..661 203 25.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4712-PB 674 CG4712-PB 1..674 1..674 3379 100 Plus
CG4712-PA 647 CG4712-PA 33..647 60..674 3090 99.7 Plus
CG4714-PA 732 CG4714-PA 104..724 49..661 715 32.2 Plus
CG31231-PA 679 CG31231-PA 51..672 28..672 428 25 Plus
CG31784-PC 763 CG31784-PC 212..728 134..664 319 25.4 Plus
CG4970-PB 690 CG4970-PB 299..673 294..664 300 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19448-PA 609 GI19448-PA 116..601 176..661 552 30.8 Plus
Dmoj\GI19447-PA 632 GI19447-PA 286..629 322..666 501 34 Plus
Dmoj\GI16997-PA 700 GI16997-PA 336..684 325..674 382 29.1 Plus
Dmoj\GI14274-PA 754 GI14274-PA 377..715 320..661 252 26.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11104-PA 776 GL11104-PA 294..666 291..664 590 37.9 Plus
Dper\GL11523-PA 731 GL11523-PA 381..719 321..664 325 30.1 Plus
Dper\GL22403-PA 767 GL22403-PA 414..733 329..651 200 25.2 Plus
Dper\GL18820-PA 506 GL18820-PA 95..463 291..651 188 24.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18378-PA 753 GA18378-PA 294..666 291..664 593 37.9 Plus
Dpse\GA24757-PA 731 GA24757-PA 381..719 321..664 321 30.1 Plus
Dpse\GA16474-PA 767 GA16474-PA 409..733 324..651 206 25.1 Plus
Dpse\GA25814-PA 506 GA25814-PA 95..463 291..651 180 24.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20293-PA 620 GM20293-PA 1..620 1..631 2581 82.6 Plus
Dsec\GM20292-PA 289 GM20292-PA 5..284 383..664 547 43.3 Plus
Dsec\GM17879-PA 678 GM17879-PA 331..672 329..673 364 29 Plus
Dsec\GM17138-PA 776 GM17138-PA 387..709 326..652 215 27.7 Plus
Dsec\GM19094-PA 506 GM19094-PA 159..483 320..665 214 25.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25773-PA 646 GD25773-PA 31..645 60..674 2806 88 Plus
Dsim\GD25772-PA 732 GD25772-PA 248..727 187..664 619 35.1 Plus
Dsim\GD19239-PA 679 GD19239-PA 332..673 329..673 364 29 Plus
Dsim\GD23780-PA 580 GD23780-PA 240..564 320..665 212 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21198-PA 694 GJ21198-PA 342..689 316..664 638 39.4 Plus
Dvir\GJ24226-PA 691 GJ24226-PA 323..657 322..657 421 32 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17830-PA 765 GK17830-PA 292..754 199..658 562 31.9 Plus
Dwil\GK17829-PA 665 GK17829-PA 320..658 322..661 517 35.5 Plus
Dwil\GK23875-PA 697 GK23875-PA 356..695 326..668 260 26.9 Plus
Dwil\GK23739-PA 696 GK23739-PA 336..678 321..664 243 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13376-PA 673 GE13376-PA 1..671 1..674 2253 69.8 Plus
Dyak\GE13375-PA 727 GE13375-PA 239..722 187..664 652 36.3 Plus
Dyak\GE25549-PA 676 GE25549-PA 329..670 329..673 348 28.8 Plus
Dyak\GE18528-PA 701 GE18528-PA 340..671 320..651 220 25.7 Plus