Clone FI19410 Report

Search the DGRC for FI19410

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:194
Well:10
Vector:pOT2
Associated Gene/TranscriptGAA1-RA
Protein status:FI19410.pep: gold
Sequenced Size:2311

Clone Sequence Records

FI19410.complete Sequence

2311 bp assembled on 2012-02-08

GenBank Submission: BT133213.1

> FI19410.complete
CCAAAATGGGCCTGCTGTCCGATCCGTCGATATCGACGCAAAGCAAGCTG
GTGGACGGACTGGCGCGTCATGTTCGCAAGGTGTGCTACGCCCTTTATGT
GGCGGGTGTGGCCTGGTTCTTCTGTTTGGCGCTGCCGGAGTTCAACCACG
GGACATATCTCTCCGAGAATGCTCTTTCGCCAGGCTTGGTCTATCCGGAG
ATCCGCATCGATGCGAATCGTCTGGCCATCCAGTTGCTGGAGGAGCTGCA
GCGGGAGCGAAAGGATCATCTGTCCACCACGCCGCACGCCTGGATTGCGG
CCAAGATGAACGAGTTCGGCCTGGAGACGCACACGCACAACTACACGTTG
CGCTACCCATTTGGCGGCGGTAAAGAGTATCACGGCAAGAATATCTACGG
CATATTGAGGGCCCCAAGAATTGCCTCCACGGAGGGCATCGTTTTTGCGG
CTCCATATCGCGCTGCCAGTTCCGTGCACACGGACATTTCCGCCAGCGTG
CCGCTTCTGCTGGCCTTCGCCGATTTTGCCCGGCGCAAGAACTACTGGGC
GAAGGATCTGATCTTCCTGATCACCGAACAGGAGCAGCTGGGCATGCAGG
CCTGGCTGGAGGCTTATCACGATGGCGACCGGGAACTGGACTTGAGCAAG
GCGTACCTGCGTCCTGGCAATTTGCCCGCTCGCGCTGGTTCGCTGCAAGC
GGCTCTGAATATTGAAGTTCAGGATCTGGAGATTGACCATGTGGATGTGC
GAATAGAGGGCTTGAACGGCAAGCTGCCCAATCTGGATATGTTCAATCTG
GTGCAGAGAATTATGGCCCGCGAGGGCATCGCCTCTGGCTATAAACAAGC
GCCACGCAAGAAGCGTCGTCACAGCCAGTCGCACTTCGAGCAGAACTTCC
GCCAGATGCTGACCATGCTGGCCAGCCAGTCGTCGGGCGTACCCACTGGC
AATCATGGGCTGTTCCACCGTTATCGGATCGATGCTTTGACCATAGCTGC
CAATCGAAGGGCCACCCATGCCACACTGAAGGGCAGCCCAGGATCGGCAG
CGGTGCCTTTGCTGAAGGCCATCGAGGGAATAGCCAGGAGTCTGAACAAC
CTTCTGGAGCGCTTCCATCAAAGCTTTTTCTTCTATGTGATCGTAAGCAA
CGATCGCTACATCTCCATTGGGGATTATATGCCCGCTTTGGTGGCTCTGG
TAGCTTGTGCCTTCCTTAAGGCCTATCTAACGTGGTCCACGCTCCCGGCG
ACCAACGCTGAGCTGGAAAAGGCCGCTGGCTGGCTTAGGGAGCACGAACA
GGAGGCGGAACTGGAGGAGAACCTAGAGCCGGATAAGTTCGAGCTGCCGT
ATGGTTCGGTATTGATTTACCTTACTGCCACCCTGTTGATTGGTTTCCTG
TGCAACGTGCTGCCCCTGCAGCAATATTTCCTAGAGATTCCTATGGGCGC
CGCACCACTGACCACCTCAGTACTGAGTTTTCTTTCTCTGATCGGTTTCG
TTCTGCCCTTTGTGGTGGTTTTGCCGCCCGGAGGATTGGAGCTGCTGCAT
GTGGCCTTTCTGCTAATCTATGGCTGCGCTTTAATAGTCATCGGGCTCCT
CAACTTTGCCCTGGGCTTATTTGCGGCCGTGCTGACTGTACCGCTGGTCA
TCGCGCTGGAGACCAAGGAGGAGAACTCGCGCAGCACGCTGAGGAACACG
ATCCGCTTGGCCACGCTGGTCATGAATCCCATGATGGTCGTTTATGTGAT
CGTGCTGGCCATGACATTCTACCAGTTCCCGGAGCTGCCGGTGCAGAAGA
TCATGCTGAGGGCGGCCACCGCGGCCATGGATGCCTCGGCTTATGGACTT
ATCGATTCCGTGATTTATGGCAACTGGCTGTACTTTGTCATCTGCACGAT
TTTCCTGCCGCTGTGGATCATCTGCTGGACCTTGTCGCTGTCCAAGCGAC
GCGACTACGCAGATTACCTGGACTTCGATGAGTCGCCATCAACGTCGCCG
CAGCCGCAGTCAAAGGTGAAAACGAATTGAGGAGACGAACAGCACGGATT
GCCATTCACTGGCTACATATATCAACTGGAAATGATCCTAAGATGAAGTG
TGATAAACCCAACAAAACTGTGTGTGATGGCGGTAAGAGATTGCACATGC
AGAGAAAATTCCATTTAAATGTTATGCATTTGATTAAATGTCTAAATAAA
AGAAGCCTATTTATTAGTTGGAATAACTAAGTGTAAATGTAATCCAAAAA
ATATTAAATATACCACGGCATTTTCGATGTTGATTCCCAGTTAAAAAAAA
AAAAAAAAAAA

FI19410.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5763691..5765371 1862..182 8270 99.5 Minus
chrX 22417052 chrX 5763192..5763622 2292..1862 2140 99.8 Minus
chrX 22417052 chrX 5765429..5765612 184..1 905 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5871340..5873020 1862..182 8405 100 Minus
X 23542271 X 5870839..5871271 2294..1862 2165 100 Minus
X 23542271 X 5873078..5873261 184..1 920 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:10:51 has no hits.

FI19410.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:11:35 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5763192..5763621 1863..2292 99 <- Minus
chrX 5763691..5765369 184..1862 99 <- Minus
chrX 5765430..5765612 1..183 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-08 16:11:05 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3033-RA 1..2025 6..2030 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:08:56 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
GAA1-RA 1..2025 6..2030 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:24:16 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
GAA1-RA 1..2025 6..2030 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 16:11:05 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3033-RA 104..2395 1..2292 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:08:56 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
GAA1-RA 97..2388 1..2292 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:24:16 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
GAA1-RA 97..2388 1..2292 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:35 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
X 5870841..5871270 1863..2292 100 <- Minus
X 5871340..5873018 184..1862 100 <- Minus
X 5873079..5873261 1..183 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:35 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
X 5870841..5871270 1863..2292 100 <- Minus
X 5871340..5873018 184..1862 100 <- Minus
X 5873079..5873261 1..183 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:35 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
X 5870841..5871270 1863..2292 100 <- Minus
X 5871340..5873018 184..1862 100 <- Minus
X 5873079..5873261 1..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:08:56 Download gff for FI19410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5767112..5767294 1..183 100   Minus
arm_X 5764874..5765303 1863..2292 100 <- Minus
arm_X 5765373..5767051 184..1862 100 <- Minus

FI19410.hyp Sequence

Translation from 2 to 2029

> FI19410.hyp
KMGLLSDPSISTQSKLVDGLARHVRKVCYALYVAGVAWFFCLALPEFNHG
TYLSENALSPGLVYPEIRIDANRLAIQLLEELQRERKDHLSTTPHAWIAA
KMNEFGLETHTHNYTLRYPFGGGKEYHGKNIYGILRAPRIASTEGIVFAA
PYRAASSVHTDISASVPLLLAFADFARRKNYWAKDLIFLITEQEQLGMQA
WLEAYHDGDRELDLSKAYLRPGNLPARAGSLQAALNIEVQDLEIDHVDVR
IEGLNGKLPNLDMFNLVQRIMAREGIASGYKQAPRKKRRHSQSHFEQNFR
QMLTMLASQSSGVPTGNHGLFHRYRIDALTIAANRRATHATLKGSPGSAA
VPLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYISIGDYMPALVALV
ACAFLKAYLTWSTLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPY
GSVLIYLTATLLIGFLCNVLPLQQYFLEIPMGAAPLTTSVLSFLSLIGFV
LPFVVVLPPGGLELLHVAFLLIYGCALIVIGLLNFALGLFAAVLTVPLVI
ALETKEENSRSTLRNTIRLATLVMNPMMVVYVIVLAMTFYQFPELPVQKI
MLRAATAAMDASAYGLIDSVIYGNWLYFVICTIFLPLWIICWTLSLSKRR
DYADYLDFDESPSTSPQPQSKVKTN*

FI19410.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
GAA1-PA 674 CG3033-PA 1..674 2..675 3466 100 Plus

FI19410.pep Sequence

Translation from 2 to 2029

> FI19410.pep
KMGLLSDPSISTQSKLVDGLARHVRKVCYALYVAGVAWFFCLALPEFNHG
TYLSENALSPGLVYPEIRIDANRLAIQLLEELQRERKDHLSTTPHAWIAA
KMNEFGLETHTHNYTLRYPFGGGKEYHGKNIYGILRAPRIASTEGIVFAA
PYRAASSVHTDISASVPLLLAFADFARRKNYWAKDLIFLITEQEQLGMQA
WLEAYHDGDRELDLSKAYLRPGNLPARAGSLQAALNIEVQDLEIDHVDVR
IEGLNGKLPNLDMFNLVQRIMAREGIASGYKQAPRKKRRHSQSHFEQNFR
QMLTMLASQSSGVPTGNHGLFHRYRIDALTIAANRRATHATLKGSPGSAA
VPLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYISIGDYMPALVALV
ACAFLKAYLTWSTLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPY
GSVLIYLTATLLIGFLCNVLPLQQYFLEIPMGAAPLTTSVLSFLSLIGFV
LPFVVVLPPGGLELLHVAFLLIYGCALIVIGLLNFALGLFAAVLTVPLVI
ALETKEENSRSTLRNTIRLATLVMNPMMVVYVIVLAMTFYQFPELPVQKI
MLRAATAAMDASAYGLIDSVIYGNWLYFVICTIFLPLWIICWTLSLSKRR
DYADYLDFDESPSTSPQPQSKVKTN*

FI19410.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21062-PA 681 GF21062-PA 1..661 2..660 2993 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18464-PA 677 GG18464-PA 1..677 2..675 3416 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11981-PA 650 GH11981-PA 1..638 2..650 2616 77.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
GAA1-PA 674 CG3033-PA 1..674 2..675 3466 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15359-PA 652 GI15359-PA 1..652 2..675 2452 69.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15212-PA 672 GL15212-PA 1..672 2..675 2837 81.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15765-PA 672 GA15765-PA 1..672 2..675 2820 80.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12612-PA 674 GM12612-PA 1..674 2..675 3557 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16225-PA 577 GD16225-PA 27..577 125..675 2900 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16787-PA 652 GJ16787-PA 1..652 2..675 2673 74.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25197-PA 657 GK25197-PA 1..657 2..675 2347 68.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15687-PA 680 GE15687-PA 1..680 2..675 3515 96.9 Plus