Clone FI19422 Report

Search the DGRC for FI19422

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:194
Well:22
Vector:pOT2
Associated Gene/TranscriptbetaTub56D-RA
Protein status:FI19422.pep: gold
Sequenced Size:1693

Clone Sequence Records

FI19422.complete Sequence

1693 bp assembled on 2012-02-08

GenBank Submission: BT133200.1

> FI19422.complete
CACGCCCGAAGATTCGAGTAAGATCGGTCGGCGGAACGCAATGACAGCTG
CGCCTCGAGATCCGAAACGAAAACCCACGCCAGATGACGTTATCGTTGGT
GTGGCGATGGTGCTGCTGGTCGTGGTGGTGGAAACGCACCAAAAATGGCA
GCGAATAAGTTATGTTAATCGGAGCTCGGCCCATACACAGAGTTTATGAT
GGCGTACATGGGTGGCCTAAACCACGTAGCCGAGCCCAGACATGTTTCTG
GGAGATCATCTCCGATGAGCATGGCATCGATGCCACCGGCGCCTACCACG
GTGACAGCGACCTGCAGCTGGAGCGCATCAATGTGTACTACAATGAGGCG
TCCGGTGGCAAGTACGTGCCCCGCGCTGTCCTTGTCGATCTGGAGCCCGG
CACCATGGACTCTGTGCGATCGGGACCTTTCGGCCAGATCTTCAGGCCCG
ACAACTTTGTGTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGT
CATTACACAGAGGGTGCTGAGCTGGTGGACTCAGTGCTCGATGTTGTCCG
CAAGGAGGCCGAATCCTGCGACTGCCTGCAAGGCTTCCAACTCACACACT
CCCTTGGCGGCGGCACTGGCTCCGGTATGGGAACCCTGCTGATTTCCAAG
ATCCGCGAGGAGTACCCCGACAGGATCATGAACACATACTCGGTTGTGCC
GTCGCCCAAGGTGTCGGACACCGTTGTGGAGCCCTACAACGCCACCCTGT
CGGTGCACCAGCTGGTCGAGAACACGGACGAGACCTACTGCATCGACAAC
GAGGCTCTCTACGATATCTGCTTCCGCACCCTCAAGCTGACGACACCCAC
ATACGGTGACCTGAACCATCTTGTCTCCCTGACCATGTCCGGCGTAACCA
CCTGCCTCCGATTCCCCGGCCAACTGAACGCTGATCTCCGCAAGCTGGCC
GTCAACATGGTGCCCTTCCCACGTCTTCACTTCTTCATGCCCGGCTTCGC
TCCCCTGACCTCCCGAGGATCCCAGCAGTACCGCGCCCTCACCGTGCCCG
AGCTGACCCAGCAGATGTTCGATGCCAAGAACATGATGGCCGCCTGCGAC
CCACGCCACGGACGCTACCTTACCGTCGCCGCCATCTTCCGTGGACGCAT
GTCCATGAAGGAGGTCGACGAGCAGATGCTGAACATCCAGAACAAGAACA
GCTCCTACTTCGTCGAATGGATCCCCAACAACGTGAAGACCGCCGTGTGC
GACATCCCGCCCCGTGGTCTGAAGATGTCCGCCACCTTCATCGGCAACTC
CACTGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACCGCTA
TGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACCGGCGAGGGCATGGAC
GAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGATCTGGTGTCCGA
GTACCAGCAGTACCAGGAGGCCACCGCCGACGAGGACGCCGAGTTCGAGG
AGGAGCAGGAGGCTGAGGTCGACGAGAACTAAATTCGAATCGGAAATCAA
TCGAATTCTCGATCAATGTTTTGCGAAAAAAAATGAAACGAGAACAAATG
AATTCAGTTGTAAAAGATTTGTTCTCTTAACAACGTAATCAATAAAGTCG
GATCCAATTTTGTTCACAAGTCTAAAAAAAAAAAAAAAAAAAA

FI19422.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15334484..15335911 1673..246 7140 100 Minus
chr2R 21145070 chr2R 20197179..20198080 582..1483 3040 89.1 Plus
chr3R 27901430 chr3R 5234517..5235433 1498..582 2605 85.6 Minus
chr2R 21145070 chr2R 15336492..15336736 245..1 1225 100 Minus
chr3R 27901430 chr3R 23790232..23790556 1467..1143 1100 89.2 Minus
chr3R 27901430 chr3R 23791891..23792147 1141..885 805 87.5 Minus
chr3R 27901430 chr3R 5235512..5235828 562..246 730 82 Minus
chr3R 27901430 chr3R 23795878..23796110 712..480 550 82.4 Minus
chr2R 21145070 chr2R 20196890..20197121 349..580 545 82.3 Plus
chr3R 27901430 chr3R 23792618..23792791 882..709 465 84.5 Minus
chr3R 27901430 chr3R 23797066..23797301 481..246 355 76.7 Minus
chr3R 27901430 chr3R 23792401..23792497 822..726 215 81.4 Minus
chr2R 21145070 chr2R 20196707..20196817 246..356 210 79.3 Plus
chr3L 24539361 chr3L 6524088..6524209 879..1000 190 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19447316..19448746 1676..246 7155 100 Minus
2R 25286936 2R 24311194..24312095 582..1483 3010 88.9 Plus
3R 32079331 3R 9408684..9409600 1498..582 2605 85.6 Minus
2R 25286936 2R 19449327..19449571 245..1 1225 100 Minus
3R 32079331 3R 27967268..27967592 1467..1143 1100 89.2 Minus
3R 32079331 3R 27968929..27969185 1141..885 805 87.5 Minus
3R 32079331 3R 9409679..9409995 562..246 730 82 Minus
3R 32079331 3R 27972919..27973151 712..480 565 82.8 Minus
2R 25286936 2R 24310905..24311136 349..580 545 82.3 Plus
3R 32079331 3R 27969656..27969829 882..709 465 84.5 Minus
3R 32079331 3R 27974107..27974342 481..246 355 76.7 Minus
3R 32079331 3R 27969439..27969535 822..726 215 81.4 Minus
2R 25286936 2R 24310722..24310832 246..356 210 79.3 Plus
3L 28110227 3L 6531600..6531723 877..1000 200 77.4 Plus
Blast to na_te.dros performed 2019-03-15 13:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 698..904 1052..1261 151 55.9 Plus

FI19422.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:14:39 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15334484..15335911 246..1673 100 <- Minus
chr2R 15336492..15336736 1..245 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-08 17:30:12 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RA 1..1371 162..1532 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:09:06 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RA 1..1371 162..1532 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:24:36 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RA 1..1371 162..1532 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 17:30:11 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RA 1..1673 1..1673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:06 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RA 29..1701 1..1673 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:24:36 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RA 29..1701 1..1673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:14:39 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19447319..19448746 246..1673 100 <- Minus
2R 19449327..19449571 1..245 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:14:39 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19447319..19448746 246..1673 100 <- Minus
2R 19449327..19449571 1..245 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:14:39 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19447319..19448746 246..1673 100 <- Minus
2R 19449327..19449571 1..245 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:06 Download gff for FI19422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15334824..15336251 246..1673 100 <- Minus
arm_2R 15336832..15337076 1..245 100   Minus

FI19422.pep Sequence

Translation from 161 to 1531

> FI19422.pep
MLIGARPIHRVYDGVHGWPKPRSRAQTCFWEIISDEHGIDATGAYHGDSD
LQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFV
FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG
GTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQ
LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLR
FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQ
QMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYF
VEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRR
KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQE
AEVDEN*

FI19422.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12605-PA 447 GF12605-PA 20..447 29..456 2324 100 Plus
Dana\GF17765-PA 446 GF17765-PA 20..430 29..439 2090 96.4 Plus
Dana\GF11391-PA 474 GF11391-PA 40..467 29..450 2052 90.4 Plus
Dana\GF16133-PA 513 GF16133-PA 20..509 29..456 1818 73.9 Plus
Dana\GF10957-PA 457 GF10957-PA 20..422 29..432 1218 55.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20906-PA 475 GG20906-PA 20..475 1..456 2470 99.6 Plus
Dere\betaTub85D-PA 446 GG17374-PA 20..430 29..439 2090 96.4 Plus
Dere\GG22960-PA 454 GG22960-PA 20..447 29..450 2052 90.4 Plus
Dere\GG12076-PA 513 GG12076-PA 20..509 29..456 1807 73.5 Plus
Dere\GG15348-PA 462 GG15348-PA 20..422 29..432 1219 55.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20203-PA 447 GH20203-PA 20..447 29..456 2324 100 Plus
Dgri\GH19142-PA 446 GH19142-PA 20..430 29..439 2090 96.4 Plus
Dgri\GH20987-PA 454 GH20987-PA 20..447 29..450 2050 90.4 Plus
Dgri\GH14021-PA 512 GH14021-PA 20..496 29..449 1825 75.3 Plus
Dgri\GH12373-PA 456 GH12373-PA 20..441 29..455 1194 52.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-PA 456 CG9277-PA 1..456 1..456 2417 100 Plus
betaTub56D-PB 447 CG9277-PB 20..447 29..456 2257 100 Plus
betaTub85D-PA 446 CG9359-PA 20..446 29..455 2152 94.6 Plus
betaTub60D-PB 453 CG3401-PB 20..446 29..450 2073 90.6 Plus
betaTub60D-PA 454 CG3401-PA 20..447 29..450 2072 90.4 Plus
betaTub97EF-PB 457 CG4869-PB 20..453 29..456 2037 87.3 Plus
betaTub97EF-PC 457 CG4869-PC 20..453 29..456 1987 84.8 Plus
CG32396-PA 462 CG32396-PA 20..426 29..436 1230 55.3 Plus
alphaTub84B-PA 450 CG1913-PA 21..449 30..448 905 39.6 Plus
alphaTub85E-PA 449 CG9476-PA 21..448 30..450 900 40.4 Plus
alphaTub84D-PA 450 CG2512-PA 21..449 30..448 896 39.6 Plus
alphaTub67C-PA 462 CG8308-PA 21..461 30..447 838 37.6 Plus
CG7794-PA 455 CG7794-PA 20..452 25..448 710 32.6 Plus
gammaTub23C-PA 475 CG3157-PA 21..451 29..445 676 32.6 Plus
gammaTub37C-PB 457 CG17566-PB 21..453 29..451 661 32.7 Plus
gammaTub37C-PA 457 CG17566-PA 21..453 29..451 661 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20729-PA 447 GI20729-PA 20..447 29..456 2324 100 Plus
Dmoj\GI23599-PA 446 GI23599-PA 20..430 29..439 2090 96.4 Plus
Dmoj\GI21321-PA 454 GI21321-PA 20..447 29..450 2049 90.4 Plus
Dmoj\GI24852-PA 512 GI24852-PA 20..496 29..449 1813 74.8 Plus
Dmoj\GI14752-PA 460 GI14752-PA 20..422 29..432 1232 55.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16725-PA 447 GL16725-PA 20..447 29..456 2324 100 Plus
Dper\GL13671-PA 445 GL13671-PA 20..429 29..439 2015 93.9 Plus
Dper\GL23875-PA 511 GL23875-PA 20..507 29..456 1803 73.4 Plus
Dper\GL19895-PA 469 GL19895-PA 20..426 29..436 1211 54.5 Plus
Dper\GL12416-PA 1216 GL12416-PA 787..1200 30..433 860 40.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27686-PA 447 GA27686-PA 20..447 29..456 2324 100 Plus
Dpse\GA21728-PA 446 GA21728-PA 20..430 29..439 2090 96.4 Plus
Dpse\GA17427-PA 454 GA17427-PA 20..447 29..450 2050 90.4 Plus
Dpse\GA27086-PB 455 GA27086-PB 20..451 29..456 1999 86.8 Plus
Dpse\GA27086-PA 511 GA27086-PA 20..507 29..456 1803 73.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19828-PA 447 GM19828-PA 20..447 29..456 2324 100 Plus
Dsec\GM26260-PA 446 GM26260-PA 20..430 29..439 2090 96.4 Plus
Dsec\GM11852-PA 454 GM11852-PA 20..447 29..450 2041 90.2 Plus
Dsec\GM16302-PA 513 GM16302-PA 20..509 29..456 1806 73.3 Plus
Dsec\GM14788-PA 462 GM14788-PA 20..422 29..432 1219 55.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25319-PA 447 GD25319-PA 20..447 29..456 2324 100 Plus
Dsim\GD20798-PA 446 GD20798-PA 20..430 29..439 2090 96.4 Plus
Dsim\GD13960-PA 462 GD13960-PA 20..422 29..432 1193 54.8 Plus
Dsim\GD20767-PA 449 GD20767-PA 21..448 30..450 866 40.4 Plus
Dsim\GD19909-PA 450 GD19909-PA 21..434 30..433 862 40.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20466-PA 447 GJ20466-PA 20..447 29..456 2324 100 Plus
Dvir\GJ23573-PA 446 GJ23573-PA 20..430 29..439 2090 96.4 Plus
Dvir\GJ21592-PA 454 GJ21592-PA 20..447 29..450 2051 90.4 Plus
Dvir\GJ24495-PA 523 GJ24495-PA 20..507 29..449 1780 72.7 Plus
Dvir\GJ19155-PA 461 GJ19155-PA 20..422 29..432 1228 55.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15706-PA 447 GK15706-PA 20..447 29..456 2324 100 Plus
Dwil\GK12133-PA 446 GK12133-PA 20..430 29..439 2090 96.4 Plus
Dwil\GK22203-PA 454 GK22203-PA 20..447 29..450 2056 90.7 Plus
Dwil\GK22527-PA 513 GK22527-PA 20..496 29..449 1818 75.1 Plus
Dwil\GK10221-PA 456 GK10221-PA 20..422 29..432 1229 55.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\betaTub56D-PA 447 GE13844-PA 20..447 29..456 2324 100 Plus
Dyak\GE24779-PA 446 GE24779-PA 20..430 29..439 2090 96.4 Plus
Dyak\GE14397-PA 454 GE14397-PA 20..447 29..450 2050 90.4 Plus
Dyak\GE10520-PA 513 GE10520-PA 20..509 29..456 1811 73.7 Plus
Dyak\GE21566-PA 462 GE21566-PA 20..422 29..432 1221 55.6 Plus

FI19422.hyp Sequence

Translation from 161 to 1531

> FI19422.hyp
MLIGARPIHRVYDGVHGWPKPRSRAQTCFWEIISDEHGIDATGAYHGDSD
LQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFV
FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG
GTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQ
LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLR
FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQ
QMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYF
VEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRR
KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQE
AEVDEN*

FI19422.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-PA 456 CG9277-PA 1..456 1..456 2417 100 Plus
betaTub56D-PB 447 CG9277-PB 20..447 29..456 2257 100 Plus
betaTub85D-PA 446 CG9359-PA 20..446 29..455 2152 94.6 Plus
betaTub60D-PB 453 CG3401-PB 20..446 29..450 2073 90.6 Plus
betaTub60D-PA 454 CG3401-PA 20..447 29..450 2072 90.4 Plus