Clone FI19430 Report

Search the DGRC for FI19430

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:194
Well:30
Vector:pOT2
Associated Gene/TranscriptPink1-RE
Protein status:FI19430.pep: gold
Sequenced Size:2876

Clone Sequence Records

FI19430.complete Sequence

2876 bp assembled on 2012-02-08

GenBank Submission: BT133188.1

> FI19430.complete
CTGTTTCTAAATTATTCCGTTGTTTTTATCGTAAATTCTTGCACACTTAG
CTATTATTTTATAGCGAAATATAAGCAAAGCAAGCTTTTAAACAAGTGTT
TATTGCGGCGCACATTTTCCGTGACAAATGAAAAGATCCAGCTGACCAGC
GATTATCTAACGACCAAATCGAATCGAAACGAAACGTTGAAGTAGGCGCA
TTACATTAAAAATTGGCTGCCAGTCTAGCCCACACAGATATCGAAAAAGG
CGATATATCTTTGGATAATCATTGCAAAAATAAACCCTTTCGATTCGACG
ATTTCGCCTTGTAGTTCTGCCACCACCGCCCCCACACTTCGCCCCGCAGC
TGCACCACAACCACCACCACCCACAAACAGAAAATTTATTTGCGACGCAA
AAACAAAACAATCGAATCGAAACGAACCGAACCGAAACGAAACGACAGCA
GCTGTTTGGTTATAAATCGGCGCTATCGATCGCACACATGAGCAAAATTG
GCGGAGAAGAAGAGGAAGCAGCAGCAAGAGTTAAGCACCACAAATCTTAA
AGAATAGGCACTAGGAGCCGAGGTCTTTGCGGGCCGAAAGATGTCTGTGA
GACTGCTGACCGTGCGACTGATCAAACATGGTCGCTACATTTTGCGCAGC
TATTGTAAACGTGATATACACGCCAACATTTTGGACCAGAATCAATTGAA
GACAAGAAGCAAGCGAGGCTTTCCCCTACCCTCCACCGCTGCCAATGTGC
TGCGGACAACGCCCCAGCAGGCGGCCAAATCGGTGGTCAATGTAGTGCCC
CGCACCATCAACTCCCCGTCGGGATCACCGTTTAATGGCAGCGGCAGTAG
CCCCACCAGCAGCAGTGGAATCTTCCGAGTGGGCCAGCATGCGCGCAAAT
TGTTCATCGACAACATCCTCAGCCGGGTGACCACCACCTACTCGGAGGAT
CTGCGCCAGCGCGCTACCCGCAAGCTATTCTTTGGCGATTCAGCGCCCTT
CTTCGCCCTGATTGGCGTTAGTCTGGCCTCCGGATCGGGTGTGCTCAGCA
AGGAGGATGAACTGGAGGGCGTGTGCTGGGAGATTCGGGAGGCAGCTAGC
CGGCTGCAGAACGCCTGGAATCACGACGAGATCTCCGATACGCTAGACAG
CAAGTTCACCATCGATGACTTGGAAATCGGTCCGCCCATAGCCAAAGGTT
GTGCCGCTGTCGTCTATGCAGCGGATTTCAAGAAAGATGTTGCCTCGGAT
GGTGCATCCCTGCATACCGATGCGCAGCCGCAGGCAACGCCAGCCTTTGC
GCCGAATAGCTGGAGTACCCACGAGATGATGTCGCCGCTGCAGAACATGT
CGCGCTTTGTTCACAACTTTGGCGGCTCTGTGGACAACGTCTTCCACTAC
AGCCAGCCATCTGCGGCCAGTGATTTCGTGGGCGCCCAGTCGAGGGAACA
GGACCAGCGGCACCACGAGCAACAGCAGCATCAGAATCAGGAACAAGAGC
AGCATCAGAACCAGGAGCCCAGCAGCAGTGCCTTCAATGTGACTTCTCCA
GCGAATTCAAACATCAACAGCTCTGTGGACAGTTATCCACTGGCACTCAA
AATGATGTTCAACTACGACATCCAGAGCAACGCTCTGTCCATACTGCGTG
CCATGTACAAGGAGACGGTACCGGCACGCCAGCGCGGCATGAATGAGGCC
GCCGATGAGTGGGAACGTTTGCTGCAGAATCAAACTGTTCACCTGCCGCG
GCATCCGAACATTGTCTGTATGTTTGGCTTCTTTTGCGACGAGGTGCGCA
ACTTTCCCGATGGCCATCTCCTGTATCCGGTGGCGCAGCCGCAACGCATC
AATCCACAGGGCTATGGCCGCAATATGTCGCTGTATCTGCTGATGAAACG
CTACGATCACAGTCTTCGCGGCCTGCTCGATAGCCAGGATCTGAGCACGC
GCAATCGCATCCTGCTGCTGGCTCAAATGCTCGAGGCTGTCAACCATTTG
AGCCGTCACGGCGTTGCCCATCGTGACCTAAAGTCTGATAATGTGCTAAT
CGAGCTGCAGGACGATGCGGCGCCGGTGCTAGTGCTCTCCGACTTTGGCT
GTTGTCTGGCGGACAAGGTGCATGGCCTGCGCCTGCCGTACGTTTCGCAC
GACGTCGACAAGGGCGGCAATGCGGCGTTGATGGCGCCAGAGATCTTCAA
TACGATGCCCGGTCCGTTTGCCGTACTCAATTATGGCAAGGCCGATCTGT
GGGCTTGCGGTGCCCTGGCTTACGAAATCTTTGGCAACCGCAATCCGTTC
TATTCGAGCAGCGGTGGGATGGCGCGCGAACGCGGTGAGATGACGCTTTC
GCTGAGGAACAGCGATTACCGACAGGACCAATTGCCGCCAATGAGCGATG
CTTGCCCGCCGCTGCTGCAACAGCTGGTCTACAACATCCTCAATCCCAAC
CCGTCCAAGCGGGTCAGTCCGGATATTGCGGCAAATGTGGTGCAGCTGTT
CCTCTGGGCCCCATCCAATTGGCTTAAGGCGGGCGGCATGCCCAACAGTC
CGGAGATCCTACAGTGGCTCCTTTCGCTGACCACTAAGATTATGTGCGAG
GGTCGTCCACAGATGGGCGCCGGATTGATGCCAGTGGCCAGCTGTGGCAA
TAGGCGCGCCTATGTGGAGTACCTGCTCATATGCAGCTTTCTGGCACGCG
CCCGGCTGCGTCGCATTCGCGGCGCCCTCAACTGGATCCAGAATGTGGTG
GCGTAGGAGAAAAGCCTTCTACTTGTTACTCTGAGAAAATCAAATGGAAA
AGCGTGTGATACCTATATTTTACATATGTATTTATAAATGAAATCAAAAT
TAACGCCAAAAAAAAAAAAAAAAAAA

FI19430.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6577807..6578821 1541..2555 4970 99.3 Plus
chrX 22417052 chrX 6576957..6577743 755..1541 3890 99.6 Plus
chrX 22417052 chrX 6576297..6576634 221..558 1630 98.8 Plus
chrX 22417052 chrX 6578885..6579188 2554..2857 1505 99.7 Plus
chrX 22417052 chrX 6576020..6576242 1..223 1040 97.8 Plus
chrX 22417052 chrX 6576694..6576893 556..755 985 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6685634..6686648 1541..2555 5075 100 Plus
X 23542271 X 6684785..6685571 755..1541 3935 100 Plus
X 23542271 X 6684125..6684462 221..558 1690 100 Plus
X 23542271 X 6686711..6687018 2554..2861 1540 100 Plus
X 23542271 X 6683848..6684070 1..223 1115 100 Plus
X 23542271 X 6684522..6684721 556..755 1000 100 Plus
Blast to na_te.dros performed 2019-03-15 13:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2460 1447..1571 216 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6858 1445..1527 203 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..6936 1447..1536 191 69.2 Plus
roo 9092 roo DM_ROO 9092bp 1062..1250 1453..1645 190 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6811 1445..1528 188 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2270..2395 1396..1527 187 63.9 Plus
roo 9092 roo DM_ROO 9092bp 1067..1148 1437..1518 185 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2424 1455..1571 182 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6875 1445..1571 177 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6900 1437..1524 171 68.5 Plus
roo 9092 roo DM_ROO 9092bp 1087..1163 1445..1523 165 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2463 1469..1631 162 59.8 Plus
roo 9092 roo DM_ROO 9092bp 1091..1162 1437..1508 162 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2508 1445..1571 160 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2759..2900 1442..1582 158 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6790 1461..1528 153 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2853 1445..1518 137 68.9 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 970..1033 1465..1526 134 71.9 Plus
roo 9092 roo DM_ROO 9092bp 1108..1179 1445..1516 126 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2819..2938 1384..1504 116 58.5 Plus

FI19430.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:15:06 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6576020..6576242 1..223 97 -> Plus
chrX 6576300..6576633 224..557 85 -> Plus
chrX 6576696..6576893 558..755 99 -> Plus
chrX 6576958..6577648 756..1446 99 == Plus
chrX 6577731..6577743 1529..1541 100 -> Plus
chrX 6577808..6578821 1542..2555 99 -> Plus
chrX 6578887..6579188 2556..2857 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-08 19:01:53 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RC 1..2166 591..2756 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:09:34 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RF 1..2166 591..2756 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:25:39 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RG 1..2166 591..2756 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 19:01:52 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RE 33..2889 1..2857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:34 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RE 8..2864 1..2857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:25:39 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RE 8..2864 1..2857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:15:06 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
X 6683848..6684070 1..223 100 -> Plus
X 6684128..6684461 224..557 100 -> Plus
X 6684524..6684721 558..755 100 -> Plus
X 6684786..6685571 756..1541 100 -> Plus
X 6685635..6686648 1542..2555 100 -> Plus
X 6686713..6687014 2556..2857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:15:06 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
X 6683848..6684070 1..223 100 -> Plus
X 6684128..6684461 224..557 100 -> Plus
X 6684524..6684721 558..755 100 -> Plus
X 6684786..6685571 756..1541 100 -> Plus
X 6685635..6686648 1542..2555 100 -> Plus
X 6686713..6687014 2556..2857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:15:06 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
X 6683848..6684070 1..223 100 -> Plus
X 6684128..6684461 224..557 100 -> Plus
X 6684524..6684721 558..755 100 -> Plus
X 6684786..6685571 756..1541 100 -> Plus
X 6685635..6686648 1542..2555 100 -> Plus
X 6686713..6687014 2556..2857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:34 Download gff for FI19430.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6577881..6578103 1..223 100 -> Plus
arm_X 6578161..6578494 224..557 100 -> Plus
arm_X 6578557..6578754 558..755 100 -> Plus
arm_X 6578819..6579604 756..1541 100 -> Plus
arm_X 6579668..6580681 1542..2555 100 -> Plus
arm_X 6580746..6581047 2556..2857 100   Plus

FI19430.hyp Sequence

Translation from 590 to 2755

> FI19430.hyp
MSVRLLTVRLIKHGRYILRSYCKRDIHANILDQNQLKTRSKRGFPLPSTA
ANVLRTTPQQAAKSVVNVVPRTINSPSGSPFNGSGSSPTSSSGIFRVGQH
ARKLFIDNILSRVTTTYSEDLRQRATRKLFFGDSAPFFALIGVSLASGSG
VLSKEDELEGVCWEIREAASRLQNAWNHDEISDTLDSKFTIDDLEIGPPI
AKGCAAVVYAADFKKDVASDGASLHTDAQPQATPAFAPNSWSTHEMMSPL
QNMSRFVHNFGGSVDNVFHYSQPSAASDFVGAQSREQDQRHHEQQQHQNQ
EQEQHQNQEPSSSAFNVTSPANSNINSSVDSYPLALKMMFNYDIQSNALS
ILRAMYKETVPARQRGMNEAADEWERLLQNQTVHLPRHPNIVCMFGFFCD
EVRNFPDGHLLYPVAQPQRINPQGYGRNMSLYLLMKRYDHSLRGLLDSQD
LSTRNRILLLAQMLEAVNHLSRHGVAHRDLKSDNVLIELQDDAAPVLVLS
DFGCCLADKVHGLRLPYVSHDVDKGGNAALMAPEIFNTMPGPFAVLNYGK
ADLWACGALAYEIFGNRNPFYSSSGGMARERGEMTLSLRNSDYRQDQLPP
MSDACPPLLQQLVYNILNPNPSKRVSPDIAANVVQLFLWAPSNWLKAGGM
PNSPEILQWLLSLTTKIMCEGRPQMGAGLMPVASCGNRRAYVEYLLICSF
LARARLRRIRGALNWIQNVVA*

FI19430.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Pink1-PI 721 CG4523-PI 1..721 1..721 3775 100 Plus
Pink1-PH 721 CG4523-PH 1..721 1..721 3775 100 Plus
Pink1-PG 721 CG4523-PG 1..721 1..721 3775 100 Plus
Pink1-PF 721 CG4523-PF 1..721 1..721 3775 100 Plus
Pink1-PE 721 CG4523-PE 1..721 1..721 3775 100 Plus

FI19430.pep Sequence

Translation from 590 to 2755

> FI19430.pep
MSVRLLTVRLIKHGRYILRSYCKRDIHANILDQNQLKTRSKRGFPLPSTA
ANVLRTTPQQAAKSVVNVVPRTINSPSGSPFNGSGSSPTSSSGIFRVGQH
ARKLFIDNILSRVTTTYSEDLRQRATRKLFFGDSAPFFALIGVSLASGSG
VLSKEDELEGVCWEIREAASRLQNAWNHDEISDTLDSKFTIDDLEIGPPI
AKGCAAVVYAADFKKDVASDGASLHTDAQPQATPAFAPNSWSTHEMMSPL
QNMSRFVHNFGGSVDNVFHYSQPSAASDFVGAQSREQDQRHHEQQQHQNQ
EQEQHQNQEPSSSAFNVTSPANSNINSSVDSYPLALKMMFNYDIQSNALS
ILRAMYKETVPARQRGMNEAADEWERLLQNQTVHLPRHPNIVCMFGFFCD
EVRNFPDGHLLYPVAQPQRINPQGYGRNMSLYLLMKRYDHSLRGLLDSQD
LSTRNRILLLAQMLEAVNHLSRHGVAHRDLKSDNVLIELQDDAAPVLVLS
DFGCCLADKVHGLRLPYVSHDVDKGGNAALMAPEIFNTMPGPFAVLNYGK
ADLWACGALAYEIFGNRNPFYSSSGGMARERGEMTLSLRNSDYRQDQLPP
MSDACPPLLQQLVYNILNPNPSKRVSPDIAANVVQLFLWAPSNWLKAGGM
PNSPEILQWLLSLTTKIMCEGRPQMGAGLMPVASCGNRRAYVEYLLICSF
LARARLRRIRGALNWIQNVVA*

FI19430.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21424-PA 703 GF21424-PA 1..703 1..721 2997 81.4 Plus
Dana\GF22825-PA 531 GF22825-PA 117..262 460..626 180 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19606-PA 706 GG19606-PA 1..706 1..721 3353 91.8 Plus
Dere\GG16421-PA 531 GG16421-PA 117..262 460..626 180 30.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24718-PA 707 GH24718-PA 1..705 1..721 2787 73.9 Plus
Dgri\GH23972-PA 530 GH23972-PA 117..262 460..626 179 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pink1-PI 721 CG4523-PI 1..721 1..721 3775 100 Plus
Pink1-PH 721 CG4523-PH 1..721 1..721 3775 100 Plus
Pink1-PG 721 CG4523-PG 1..721 1..721 3775 100 Plus
Pink1-PF 721 CG4523-PF 1..721 1..721 3775 100 Plus
Pink1-PE 721 CG4523-PE 1..721 1..721 3775 100 Plus
Pink1-PD 721 CG4523-PD 1..721 1..721 3775 100 Plus
Pink1-PC 721 CG4523-PC 1..721 1..721 3775 100 Plus
Pink1-PA 721 CG4523-PA 1..721 1..721 3775 100 Plus
Pink1-PB 721 CG4523-PB 1..721 1..721 3775 100 Plus
CaMKII-PK 482 CG18069-PK 117..262 460..626 170 30.4 Plus
CaMKII-PH 490 CG18069-PH 117..262 460..626 170 30.4 Plus
CaMKII-PC 490 CG18069-PC 117..262 460..626 170 30.4 Plus
CaMKII-PA 490 CG18069-PA 117..262 460..626 170 30.4 Plus
CaMKII-PM 504 CG18069-PM 117..262 460..626 170 30.4 Plus
CaMKII-PB 509 CG18069-PB 117..262 460..626 170 30.4 Plus
CaMKII-PE 509 CG18069-PE 117..262 460..626 170 30.4 Plus
CaMKII-PG 516 CG18069-PG 117..262 460..626 170 30.4 Plus
CaMKII-PL 522 CG18069-PL 117..262 460..626 170 30.4 Plus
CaMKII-PI 530 CG18069-PI 117..262 460..626 170 30.4 Plus
CaMKII-PD 530 CG18069-PD 117..262 460..626 170 30.4 Plus
CaMKII-PJ 531 CG18069-PJ 117..262 460..626 170 30.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\Tes31-PA 738 GI21816-PA 1..737 1..721 2736 71.8 Plus
Dmoj\GI14101-PA 531 GI14101-PA 117..262 460..626 180 30.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13349-PA 474 GL13349-PA 1..473 246..721 2057 82.4 Plus
Dper\GL18383-PA 530 GL18383-PA 117..262 460..626 180 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18232-PA 712 GA18232-PA 1..711 1..721 2919 77.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12513-PA 701 GM12513-PA 1..701 1..721 3377 92.5 Plus
Dsec\GM13012-PA 530 GM13012-PA 117..262 460..626 179 30.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24757-PA 308 GD24757-PA 96..308 509..721 1127 96.7 Plus
Dsim\GD24757-PA 308 GD24757-PA 1..97 1..97 484 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16989-PA 714 GJ16989-PA 1..713 1..721 2794 73.1 Plus
Dvir\GJ20463-PA 530 GJ20463-PA 117..262 460..626 180 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17835-PA 701 GK17835-PA 1..687 1..720 2608 70.6 Plus
Dwil\GK13605-PA 530 GK13605-PA 117..262 460..626 180 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16766-PA 706 GE16766-PA 1..706 1..721 3418 91.6 Plus
Dyak\GE14490-PA 451 GE14490-PA 117..262 460..626 180 30.4 Plus