Clone FI19442 Report

Search the DGRC for FI19442

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:194
Well:42
Vector:pOT2
Associated Gene/TranscriptCG6785-RA
Protein status:FI19442.pep: gold
Sequenced Size:4013

Clone Sequence Records

FI19442.complete Sequence

4013 bp assembled on 2012-02-08

GenBank Submission: BT133206.1

> FI19442.complete
CAAAAGCAGTTGCAGTCGACTTTTTTCTTTGTTTACAGCGATCGACCAAA
AAGAGAACATGTATGAACATATTTATTTGTGTATGTAATGTATGTATGTT
AGTTTGCAAACGGAAATATTCCCGAGACCTTCCATTGAAAGTTCACCAGT
TACACAGGTAATTAAACTTGCACACACATATTCCTGCATCATTTCTTCCG
GTTTAAATTTGCGTGTAAGGTTGCATTTATGAATATTGCGCCGCTTTTAT
TGACTTTCAATACTAAACGATATTTTTACATTAGGTGTCCAAAATTACAA
AAGCTATGTTATTTTCCACTCACAAACAAACAAGCACACGTACAAAAATA
AACCGAACAAACTTTTCCAGAAAGGTCCACTCTAATGGAATTCTCTCCTC
TCTCTCGCTCTCTCTCTCTCTATAAACGCCATTTGCCGGCTTTTTGAATT
GCGTTGTTGATATTTGGTAAACAATAAAACAGACTCTCGATCAGGTGGTT
TTGCTATAATGCATATTAATGAAATTGTTCGAACATATTGACAATTAAAA
TTCCAAGACTCTTATGTATGTTTAAATTCGCATTTTGGTTAGTCATAAAT
ATTCCTTATCTTCATTAAATAGCATTTCGTCTGAATCATTGATCTATCTA
AAAATGTGGTGTTCCAAACTTCAAACAAATAGAAGGTGATGAAAAACCTG
TTTTTTTATAAAATTAAACATTGCAATATATTGCGTGTTAAAAGTGCCTT
AGAATCGGTTTTTTATTTTTATTAAATGTATTTCTAAATTAAAGATTCGT
TAAACTCGCATTACAAAAGTAAAACAAAATCGATAGATAAACATTATCGC
CGCGGTTTCAAACAAAGCAATATCAACAAATAAAATTTACAATCGAGCTT
TTTAGAGGAAAACAAGCAAGAGGTCTAAAAAACGAGTAAACAATTTTGGG
GGTAACGAAACTAGTTTGCCACGCTGCGTTTCGCCGGTAAACATATGACG
CATTAATAGTTCAGTAAAGTCTAGAAATCGATAGAAGTTGAGGTCTATAC
ATATTTACATACATACATACATTCATATTTATGTGTATGTAAGATTTGAA
GGTAAGATAGTACATCGAATATACATACATACATATGTATACATATGTAC
ATATGTACATATGTACTTCGTGATTGCACTTTTCTAGTTGCGCTCTTAAG
ATTAAATACTAACTTCATAACATGAGCAATTTTCATTTCATTTCAATTCG
CATTAAAGAATAAAATTGTTAACATCGCTTTCTTTTCTAAGATATGAGTT
TTAATAGGTGGCTACCTATATGTATCTATATAATAAACTATGATAAGCTC
ATATGTGTATACAATATTCTAATACGATATCCTTTCTTTTTGGTTACTTT
GTGTAGTATACCAATTTCCCAAAAAAAACTGTGTATTAGCATTTTTAAAA
TGGTGTTGTCTTCAAATTTCGAATCGTTAAGGCGATCTCACCAATGTACA
AACACCCCATTGATGTTGACTTAACGTATCTTAATTGTAGAAATAGATTT
CTTTTCAACCCCATTAATGAAAGTCGCACGCTTGCCACGATTTGTGTCTA
AATATGGGCATGTATGCAGCTTCCTAGATCGTGATCTTCGCCTGGCACAC
GACCGACGACGGACCTCGATGGCGGCCACTCCACAGGCGTGGATCTTTGT
GCTCCAACGGCACAAAGCCATTCCAATTACGATTTCCTAAATTCCATAGT
CCATCTTCTGGAAAGAGAATCATATTGCACACTTTCACCGCGAAAAAAAA
AAACGAATTTGTGGCGAACAACAAAATCGGGAATTATGCATAACTGAATG
GAGAATGGAAGTTAGCATCGGATGGGATGGGATCGTAGTACTGGCTACAT
TGGTGATATGGATGGTGCTAATTGCCGCGGCACTTGGTGGCTTGGATGAA
CCGTTAAATCGAAACTGGAGCACTGGCCCAATAACGATGATGCACGCGGC
CCGCGGATTAGCACCTTTCAACGAGCCACTACGGATGGATGTTCTAGATA
CCCAAAAACCCGCCATTAGCACCATTGCCGGGCGGAGTTTTTCTGGCTCA
GCATTGGGACATCTTCGGTTAGTTGTCGACTTAACTCCGAGCCAACTGGC
CGTGCGGTGTGTGCTGAACCAGGATTCGAAACAATAGAATCAATAGTGAC
AAACGGATAATGTCTGCCTACGAGAAAATGCCGGCGAAGGCGCCACGACG
CCTCTCACCCATATGGTTTCTGGTGGTCACGTTTCTTCTCTTTGCCACCA
CCTTAACGGCGCTGGCCGTGATCGAAGCTGGACGGGCACAGAGCAACGCG
GGCGGAGAAAGCGATCTCCTAATCCTTACGCGCATGTGGAATCATTTCAA
GTCCGGTGCCGATAATGATACAGAAATTGCCACGGTGGAGCGAATTGCTA
GGGATGCCGGAAATGCAAGCAATCCGAGTGCATCCGCATCGCAGCAGGGC
AGAAACTTCTACGAGGAGCAGCAGGCGGTGGTGGTGAATGCAGAGAGCAT
GGATTCTCCCGTGTTGGGACAACGCCAGGATGCCTACGGTCCGCCGCAGA
GTCGCGAGGATTCCTACGAGCAGGATCCGTACTACGATGTGGCCGATGAC
TACGGACCTGAACGATATCCCAGTGCAGAGTCCAAGCAGGAGTCGGAAGA
GGATGAGCGTTTCTATGATAAGGAATACACCGGTGAGGGCAGGTCACAGC
AGGCACGTCCCTACGATTCCTTCTACGCTCCGTGGTCATATAAACAGCAG
CCAGCTCCAGTCGCTACTCATCCCGCTGCCGAGGGCAATAATAGAAAGCT
TCAGGCGTCTTTAGCTCCTAGCAGATCGCCTTATCCCGCCTACGATGAGA
TGTACGACTATCCCATGGGCTTCCAGCCGCGCCCACATCCGGAAACAGCG
ATGGCCAAACAATCTCAGCCCACGTCCGACAATGCAGTAGTCCAAATCCA
AAGTGAATCCACACTGGTCACCGTGCTGAAGAGCCTCAAGCAGATCTGGG
ATCTGTATCAGGCACTGATGAGTGCCTGGAACGCGGTCAGCGAACGCCAT
CAGCAGAGCACTGAGAAGTTCCGCCAAGAGCAGGCGGCGAAGAAAGCCGA
GAAGGAGCAACTGCGTCAGCAGCAGCAGCAGAAGAACAGGATAAACTCCA
AAAAACCGCCGCGCATCGAGGGAAACAAAAAGAACCAGAACAAGAGGCCG
GCTACAACGACAACTAAGGCAACCACGACGACGACGACGACAGCTGCTCC
AGATGTCTCTGATGAGGAGGAGGAGGAAGCGGAGGAGGAGGAACAGTCGC
AGAAGACAGTGGAGAAAGTTGAGACAGTCACACCATCGGCACCCGCCACC
AAAGTCTCGGCACTAAAGGGGGAAAAGGGAAATCTGAGATCGGTGCGTGG
ACTGCGCCAAAGACGCGATGCCGAGGCGGAGGACAAGGCCGACACGGATG
TGGGCGAGGGTCGCTATATCAAGGGTGATCCTCTCAAAGGATACTACGAT
TTCGTCATCACGGAGGGCTCCTACAAGTTCTGGGCCGTCTTTCAGGTGGG
CACAGCACTGCTGATTATCTACTCGACGTTCGCTGCCATTTACTACTCCA
AGGTGAATCCGCTGACCAGTGATTACGACTACACGGATTACCTGGGTGGA
GTTCGTTCGTTGTCCGGCGGAGATGCGGATTTCGTGGATGACGGCGATGC
AGCGACACCGCCCGTCTCGACCACCTCTCGTATCATGGAGTGGCTGCCAC
GGACGGCGCATTCCATCCAGTTTATACTGGATGCCATCGACAAGGTGCCA
GTGGATCATGATAAGGACAAGGAGCTCGGCTGGTCCACGGCGCAAAAGGA
CACGCCGGCGCTGGGAATGAGATAGGGAACTGACTACCATATGCGATATT
TGTTAAGGAAAATATAATTATGTTGAAGATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

FI19442.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12041012..12043884 2874..1 14260 99.9 Minus
chr2L 23010047 chr2L 12040199..12040925 3598..2872 3560 99.3 Minus
chr2L 23010047 chr2L 12039742..12040128 3980..3594 1905 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12042327..12045200 2874..1 14370 100 Minus
2L 23513712 2L 12041511..12042237 3598..2872 3635 100 Minus
2L 23513712 2L 12041051..12041440 3983..3594 1950 100 Minus
Blast to na_te.dros performed 2019-03-15 13:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 546..765 1275..1061 222 60.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2491 3123..3301 205 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6924 3097..3295 177 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6915 3125..3301 175 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6883 3139..3302 161 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6968 3088..3292 141 59.9 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 598..704 1167..1056 140 65.5 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3246..3328 3122..3200 125 66.3 Plus
roo 9092 roo DM_ROO 9092bp 1065..1161 3150..3242 123 62.9 Plus
roo 9092 roo DM_ROO 9092bp 1060..1164 3097..3197 118 61 Plus

FI19442.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:16:19 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12039742..12040126 3596..3980 99 <- Minus
chr2L 12040202..12040922 2875..3595 89 <- Minus
chr2L 12041012..12043884 1..2874 93   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-08 19:32:44 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
CG6785-RA 1..1716 2210..3925 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:09:42 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
CG6785-RA 1..1716 2210..3925 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:26:03 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
CG6785-RA 1..1716 2210..3925 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 19:32:43 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
CG6785-RA 1..3980 1..3980 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:42 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
CG6785-RA 1..3980 1..3980 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:26:03 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
CG6785-RA 1..3980 1..3980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:19 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12041054..12041438 3596..3980 100 <- Minus
2L 12041514..12042234 2875..3595 100 <- Minus
2L 12042327..12045200 1..2874 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:19 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12041054..12041438 3596..3980 100 <- Minus
2L 12041514..12042234 2875..3595 100 <- Minus
2L 12042327..12045200 1..2874 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:19 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12041054..12041438 3596..3980 100 <- Minus
2L 12041514..12042234 2875..3595 100 <- Minus
2L 12042327..12045200 1..2874 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:42 Download gff for FI19442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12041054..12041438 3596..3980 100 <- Minus
arm_2L 12041514..12042234 2875..3595 100 <- Minus
arm_2L 12042327..12045200 1..2874 100   Minus

FI19442.pep Sequence

Translation from 2209 to 3924

> FI19442.pep
MSAYEKMPAKAPRRLSPIWFLVVTFLLFATTLTALAVIEAGRAQSNAGGE
SDLLILTRMWNHFKSGADNDTEIATVERIARDAGNASNPSASASQQGRNF
YEEQQAVVVNAESMDSPVLGQRQDAYGPPQSREDSYEQDPYYDVADDYGP
ERYPSAESKQESEEDERFYDKEYTGEGRSQQARPYDSFYAPWSYKQQPAP
VATHPAAEGNNRKLQASLAPSRSPYPAYDEMYDYPMGFQPRPHPETAMAK
QSQPTSDNAVVQIQSESTLVTVLKSLKQIWDLYQALMSAWNAVSERHQQS
TEKFRQEQAAKKAEKEQLRQQQQQKNRINSKKPPRIEGNKKNQNKRPATT
TTKATTTTTTTAAPDVSDEEEEEAEEEEQSQKTVEKVETVTPSAPATKVS
ALKGEKGNLRSVRGLRQRRDAEAEDKADTDVGEGRYIKGDPLKGYYDFVI
TEGSYKFWAVFQVGTALLIIYSTFAAIYYSKVNPLTSDYDYTDYLGGVRS
LSGGDADFVDDGDAATPPVSTTSRIMEWLPRTAHSIQFILDAIDKVPVDH
DKDKELGWSTAQKDTPALGMR*

FI19442.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15493-PA 554 GF15493-PA 1..546 1..562 2040 74 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10282-PA 567 GG10282-PA 1..567 1..571 2628 89.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10201-PA 545 GH10201-PA 1..532 1..561 1203 52 Plus
Dgri\GH24954-PA 200 GH24954-PA 1..194 1..215 334 43 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6785-PC 571 CG6785-PC 1..571 1..571 2965 100 Plus
CG6785-PB 571 CG6785-PB 1..571 1..571 2965 100 Plus
CG6785-PA 571 CG6785-PA 1..571 1..571 2965 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14896-PA 530 GI14896-PA 1..523 1..565 1290 52.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14146-PA 556 GL14146-PA 1..551 1..565 1584 62.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19861-PA 554 GA19861-PA 1..549 1..565 1671 64.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26406-PA 571 GM26406-PA 1..571 1..571 2641 93.5 Plus
Dsec\GM13634-PA 502 GM13634-PA 1..502 70..571 2283 93.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22139-PA 485 GD22139-PA 1..448 1..448 2010 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24039-PA 552 GJ24039-PA 1..543 1..567 1194 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14828-PA 543 GK14828-PA 1..543 1..571 1515 59.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12501-PA 576 GE12501-PA 1..576 1..571 2661 88.7 Plus

FI19442.hyp Sequence

Translation from 2209 to 3924

> FI19442.hyp
MSAYEKMPAKAPRRLSPIWFLVVTFLLFATTLTALAVIEAGRAQSNAGGE
SDLLILTRMWNHFKSGADNDTEIATVERIARDAGNASNPSASASQQGRNF
YEEQQAVVVNAESMDSPVLGQRQDAYGPPQSREDSYEQDPYYDVADDYGP
ERYPSAESKQESEEDERFYDKEYTGEGRSQQARPYDSFYAPWSYKQQPAP
VATHPAAEGNNRKLQASLAPSRSPYPAYDEMYDYPMGFQPRPHPETAMAK
QSQPTSDNAVVQIQSESTLVTVLKSLKQIWDLYQALMSAWNAVSERHQQS
TEKFRQEQAAKKAEKEQLRQQQQQKNRINSKKPPRIEGNKKNQNKRPATT
TTKATTTTTTTAAPDVSDEEEEEAEEEEQSQKTVEKVETVTPSAPATKVS
ALKGEKGNLRSVRGLRQRRDAEAEDKADTDVGEGRYIKGDPLKGYYDFVI
TEGSYKFWAVFQVGTALLIIYSTFAAIYYSKVNPLTSDYDYTDYLGGVRS
LSGGDADFVDDGDAATPPVSTTSRIMEWLPRTAHSIQFILDAIDKVPVDH
DKDKELGWSTAQKDTPALGMR*

FI19442.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6785-PC 571 CG6785-PC 1..571 1..571 2965 100 Plus
CG6785-PB 571 CG6785-PB 1..571 1..571 2965 100 Plus
CG6785-PA 571 CG6785-PA 1..571 1..571 2965 100 Plus