Clone FI19816 Report

Search the DGRC for FI19816

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:198
Well:16
Vector:pOT2
Associated Gene/TranscriptCG13409-RA
Protein status:FI19816.pep: gold
Sequenced Size:2139

Clone Sequence Records

FI19816.complete Sequence

2139 bp assembled on 2012-04-06

GenBank Submission: BT133377.1

> FI19816.complete
CGAGTAGTGCTGGCCAAAATCGATATTTTCCACGAAAGTCGCACAAACGT
CGGACGGATTGTGGAAGACTTGTCAATAATCTGTAAAAAAAACGCGAAAA
AAAAAGAGTTCTACGGCGTAGAGGAGATGCAGTAAAAGGCGACGGCTAGG
TGGACACCGAGCATCAGCTAGACACCCGTAATTCCTGCCAGCGGCCATGG
CCAAGCCCCACTCGGATGCGGATGCCTCTGGCCTGGGCTACGCCTACCAG
CTGCCGTCCGGCGGCCTCCTGCTGCGCCTCAAATCTTCCCTCTCACAGTT
CAGCGATTTGTTCAGCGACTTCAGCAGGTACATCTCGCCCGCCTATCATC
ACGATCGCTGCGAGCGATCCGTCCATATGCGACTCTACTCGATGCACAAG
CGCGAGTTTGTCATGGTCTTCCTGGGATTCTTCACCTGCTTCGGTCTGGG
CATAGTCATCGGGCTGACGGGACCGCCCATAACCAGCACATCATCGCTGA
CCGCCCAGCAGATTCTGGCGAACACCTCGCTGGCGCATAGCCCAACGGTC
CTGGGGAAGGGACCCTTCGCCATGAAGTCGCCGCTGACCACCACATATTC
GCAGCAAATGTGGCTGATAGCCAAGCTGGTGACGGACAACAATGATGACG
AGCGGTACGACAAGAGTTTCCAAGTGAGCGTCTCAATCGATGGCATAAAC
GAGCAGCACAAGCCCCAAAGTGTCCTCGGATCCGGAGTGGCTCACAACCG
GACGCGGCACTTGGTCTGCGTACGGAACGACTGCGAGGAGTTCACGGTGA
TGCATCTGGGATTCCTCGACTATGCCCACTATATTATCACTGTGCGCTTT
TACGGCTTGGAGTCATTCCATCAGAAGTATAATATACGCAGCATAACATT
TTACTTCAAGACTTACAGTCCGGACTTCACGCAGATTGAAATCTGGTTTA
GGTGCATCTTTCTGCTGTTCACCTTCATTGTCATATGCTGGTATGCCCAC
ACCTTGCGCAAGTATCCAATCTATGATTGGTCCATTGAGCAGCGATGGTT
GTCGGTACTCCTGCCCCTGCTCCTTTTGTACGACAATCCCTTCTTCCCGC
TGATATTCCTGATGAACTCCTGGCTGCCTGGAATGCTGGACGCCATTCTG
CAAGCGACGTTCCTTTGTGCTCTACTCATGTTTTGGCTGTGCATCTACCA
TGGACTGCGACAGAACGAGCGCAGCTTCGTGCGATTTTACCTGGTCAAGG
TGATCGTCGTCCTGCCCATTTGGCTGTGCGCCATCGTTTTGGCCACGTGG
GAGAAATGCAACGAGCTGAGGGATCCCACATACAGTCACTTTGTGGATAC
GAAAAACTACAATGGCTTCAAGATGTTCTTCTACATCGCCTGCTGCATGT
ATGTGCTCTATCTGGTGCTGTTGCTACTGCGGGCGTACACCGAGCTGCGC
TCCATGCCGTACTTTGATATGCGCTTGAAGTTTCTCACGCTGCTCATGCT
GTTCGTCCTGTCCATATCCATCACGGTGACGACGTGTCGCTTTGGCTTCG
GCATCCTGGAGGATAACTTTGTCGCCTCACTTAACACCACCTATCGCAGT
TCGGCGCAGTTTATGTGCTTCTACGGACTGCTTAACTTTTACCTGTACAC
CATGGCGTATGTGTACTCGCCAGATGGACGGTTCGCCCAGGCGGAGCTGG
CTGTCACCAAGGATAATCCGGCTATTTCCATGATCGACGATTCCGACGAG
GATGTTGTCTACGGTTCCGACGAGGAGTCACGGCGACCGCTCACCTCTGT
GGGCGGCGGTGCTGGAAAGAACGATTACGACAGCGATTGATCGGCGATTA
AGAAGTATCCGCGGCAGAACGAATACCCAAATGTTCCATAGCGCAATTGA
AGTTTTAGTGCTAAATGTGTACAAAGTATTCCCTAATATAATGCATAAAT
TAACTTAAAATTTCAAAAAAATTAATCTCTGGTTGATCAATGAAACTGGA
GAGGATCGAAATATGTTTGGGTATTCATGATTAAGCTGAATTCGAAATTT
ATGTTAAAAAAAAAGTATAAATAAACCCAATAGTTCGAGTTTTGTTGTAT
GAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI19816.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17855037..17855683 647..1 3175 99.4 Minus
chr3R 27901430 chr3R 17853203..17853844 2107..1466 3100 99.5 Minus
chr3R 27901430 chr3R 17854069..17854347 1364..1086 1350 98.9 Minus
chr3R 27901430 chr3R 17854714..17854971 904..647 1260 99.2 Minus
chr3R 27901430 chr3R 17853910..17854012 1466..1364 515 100 Minus
chr3R 27901430 chr3R 17854405..17854504 1085..986 485 99 Minus
chr3R 27901430 chr3R 17854580..17854660 985..905 390 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22031273..22031919 647..1 3235 100 Minus
3R 32079331 3R 22029439..22030080 2108..1466 3165 99.8 Minus
3R 32079331 3R 22030305..22030583 1364..1086 1395 100 Minus
3R 32079331 3R 22030950..22031207 904..647 1290 100 Minus
3R 32079331 3R 22030146..22030248 1466..1364 515 100 Minus
3R 32079331 3R 22030641..22030740 1085..986 500 100 Minus
3R 32079331 3R 22030816..22030896 985..905 405 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:19:54 has no hits.

FI19816.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:20:33 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17853203..17853843 1467..2107 99 <- Minus
chr3R 17853910..17854012 1364..1466 100 <- Minus
chr3R 17854070..17854347 1086..1363 98 <- Minus
chr3R 17854405..17854504 986..1085 99 <- Minus
chr3R 17854580..17854660 905..985 98 <- Minus
chr3R 17854714..17854970 648..904 99 <- Minus
chr3R 17855037..17855683 1..647 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-06 12:50:42 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
CG13409-RA 1..1644 197..1840 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:06 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
CG13409-RA 1..1644 197..1840 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:28:21 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
CG13409-RA 1..1644 197..1840 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 12:50:42 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
CG13409-RA 1..2088 10..2098 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:06 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
CG13409-RA 1..2087 20..2107 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:28:21 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
CG13409-RA 1..2087 20..2107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:33 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22029440..22030079 1467..2107 99 <- Minus
3R 22030146..22030248 1364..1466 100 <- Minus
3R 22030306..22030583 1086..1363 100 <- Minus
3R 22030641..22030740 986..1085 100 <- Minus
3R 22030816..22030896 905..985 100 <- Minus
3R 22030950..22031206 648..904 100 <- Minus
3R 22031273..22031919 1..647 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:33 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22029440..22030079 1467..2107 99 <- Minus
3R 22030146..22030248 1364..1466 100 <- Minus
3R 22030306..22030583 1086..1363 100 <- Minus
3R 22030641..22030740 986..1085 100 <- Minus
3R 22030816..22030896 905..985 100 <- Minus
3R 22030950..22031206 648..904 100 <- Minus
3R 22031273..22031919 1..647 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:33 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22029440..22030079 1467..2107 99 <- Minus
3R 22030146..22030248 1364..1466 100 <- Minus
3R 22030306..22030583 1086..1363 100 <- Minus
3R 22030641..22030740 986..1085 100 <- Minus
3R 22030816..22030896 905..985 100 <- Minus
3R 22030950..22031206 648..904 100 <- Minus
3R 22031273..22031919 1..647 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:06 Download gff for FI19816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17855162..17855801 1467..2107 99 <- Minus
arm_3R 17855868..17855970 1364..1466 100 <- Minus
arm_3R 17856028..17856305 1086..1363 100 <- Minus
arm_3R 17856363..17856462 986..1085 100 <- Minus
arm_3R 17856538..17856618 905..985 100 <- Minus
arm_3R 17856672..17856928 648..904 100 <- Minus
arm_3R 17856995..17857641 1..647 100   Minus

FI19816.pep Sequence

Translation from 196 to 1839

> FI19816.pep
MAKPHSDADASGLGYAYQLPSGGLLLRLKSSLSQFSDLFSDFSRYISPAY
HHDRCERSVHMRLYSMHKREFVMVFLGFFTCFGLGIVIGLTGPPITSTSS
LTAQQILANTSLAHSPTVLGKGPFAMKSPLTTTYSQQMWLIAKLVTDNND
DERYDKSFQVSVSIDGINEQHKPQSVLGSGVAHNRTRHLVCVRNDCEEFT
VMHLGFLDYAHYIITVRFYGLESFHQKYNIRSITFYFKTYSPDFTQIEIW
FRCIFLLFTFIVICWYAHTLRKYPIYDWSIEQRWLSVLLPLLLLYDNPFF
PLIFLMNSWLPGMLDAILQATFLCALLMFWLCIYHGLRQNERSFVRFYLV
KVIVVLPIWLCAIVLATWEKCNELRDPTYSHFVDTKNYNGFKMFFYIACC
MYVLYLVLLLLRAYTELRSMPYFDMRLKFLTLLMLFVLSISITVTTCRFG
FGILEDNFVASLNTTYRSSAQFMCFYGLLNFYLYTMAYVYSPDGRFAQAE
LAVTKDNPAISMIDDSDEDVVYGSDEESRRPLTSVGGGAGKNDYDSD*

FI19816.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16949-PA 547 GF16949-PA 1..547 1..547 2876 97.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12542-PA 547 GG12542-PA 1..547 1..547 2919 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19826-PA 544 GH19826-PA 1..544 1..547 2647 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13409-PA 547 CG13409-PA 1..547 1..547 2912 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22294-PA 544 GI22294-PA 1..544 1..547 2632 91.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24010-PA 547 GL24010-PA 1..547 1..547 2690 95.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12265-PA 547 GA12265-PA 1..547 1..547 2695 96 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23671-PA 547 GM23671-PA 1..547 1..547 2924 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18481-PA 547 GD18481-PA 1..547 1..547 2929 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24086-PA 544 GJ24086-PA 1..544 1..547 2641 90.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13003-PA 545 GK13003-PA 1..545 1..547 2689 93.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24062-PA 547 GE24062-PA 1..547 1..547 2935 99.8 Plus

FI19816.hyp Sequence

Translation from 196 to 1839

> FI19816.hyp
MAKPHSDADASGLGYAYQLPSGGLLLRLKSSLSQFSDLFSDFSRYISPAY
HHDRCERSVHMRLYSMHKREFVMVFLGFFTCFGLGIVIGLTGPPITSTSS
LTAQQILANTSLAHSPTVLGKGPFAMKSPLTTTYSQQMWLIAKLVTDNND
DERYDKSFQVSVSIDGINEQHKPQSVLGSGVAHNRTRHLVCVRNDCEEFT
VMHLGFLDYAHYIITVRFYGLESFHQKYNIRSITFYFKTYSPDFTQIEIW
FRCIFLLFTFIVICWYAHTLRKYPIYDWSIEQRWLSVLLPLLLLYDNPFF
PLIFLMNSWLPGMLDAILQATFLCALLMFWLCIYHGLRQNERSFVRFYLV
KVIVVLPIWLCAIVLATWEKCNELRDPTYSHFVDTKNYNGFKMFFYIACC
MYVLYLVLLLLRAYTELRSMPYFDMRLKFLTLLMLFVLSISITVTTCRFG
FGILEDNFVASLNTTYRSSAQFMCFYGLLNFYLYTMAYVYSPDGRFAQAE
LAVTKDNPAISMIDDSDEDVVYGSDEESRRPLTSVGGGAGKNDYDSD*

FI19816.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13409-PA 547 CG13409-PA 1..547 1..547 2912 100 Plus