Clone FI19821 Report

Search the DGRC for FI19821

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:198
Well:21
Vector:pOT2
Associated Gene/Transcriptrun-RB
Protein status:FI19821.pep: gold
Sequenced Size:2185

Clone Sequence Records

FI19821.complete Sequence

2185 bp assembled on 2012-03-22

GenBank Submission: BT133340.1

> FI19821.complete
CGACTTTAGCGTGTCGAGAACGCACAGAGAAATATATCGTTTTCGACTTT
GGAAAACAGAAACAGGCTCGAAAGAAGCAGAGTTCGAAATCGCGAAACAA
TCCAATAACAACAAACAAACGAATTTTTTCCAAGTGACCCCCGATAAAGT
GAAGTGCATACCGAGAATCCGCAATAGAAAACCGGCAATTGTCGACAGCC
CCAGGATTACGGCTACGATTTCCACATTCGGATACGAGATGCATCTGCCA
GCGGGTCCAACGATGGTGGCCAACAACACACAGGTCCTGGCCGCTGCCGC
CGCCGCAGCAGCCGCCGCAGCGGCCGCGGTAGCCCAGGGTCCTGGGCCGC
AGCAGAGTAGCAATGCCACCACCGCCTCCGCAATCGCCATCAATCCCGCC
CAGAGTCTGGCCAACACGAGCACCCACTCGGCCAGCAGCACGGGCAGCTC
CACACCAGATCTCAGCACGAACAACACCAGCTCGAGCAGCAACGCCACCA
CCAGTCCGCAGAACTCCGCCAAGATGCCCAGCTCGATGACCGACATGTTC
GCCAGCCTGCACGAGATGCTGCAGGAGTATCACGGCGAGCTGGCCCAGAC
CGGATCGCCCTCGATCCTCTGCAGCGCCCTGCCCAATCACTGGCGGTCGA
ACAAGTCGCTGCCCGGAGCCTTCAAGGTGATCGCCCTGGACGACGTGCCC
GATGGCACCCTGGTGTCCATCAAGTGCGGCAACGACGAAAACTACTGCGG
CGAGCTGAGGAACTGCACCACGACCATGAAGAACCAGGTGGCCAAGTTCA
ACGATCTGCGCTTCGTGGGACGATCGGGACGCGGCAAGTCCTTCACGCTG
ACCATCACCATTGCCACCTATCCGGTGCAGATCGCCAGCTACAGCAAAGC
CATCAAGGTGACCGTCGACGGGCCACGGGAGCCAAGAAGCTATGGCTATC
CCCATCCCGGCGCGTTTAACCCGTTCATGCTGAATCCCGCTTGGCTGGAT
GCGGCGTACATGACCTACGGCTATGCGGACTACTTCCGCCACCAGGCAGC
CGCCCAGGCGGCCCAGGTGCATCATCCGGCACTGGCCAAGTCCTCGGCTT
CCTCGGTGTCGCCAAATCCCAATCCATCGGTGGCCACCAGCTCCTCGTCG
GCGGTTCAGCCATCTGAGTATCCCCATCCGGCGGCAGCAGTGGCAGCGGC
GGCGGGACAACCGGCGGCCATGATGCCATCGCCACCGGGAGCGGCGCCTG
CCACGCCCTATGCCATTCCGCAGTTCCCATTCAACCATGTGGCCGCCGCA
GCCGCCGCCAAGGCAGCCACGCCACACGCCTTCCATCCGTATAACTTTGC
CGCGGCAGCTGGCTTGCGGGCCCGCAATGCTGCCCTGCACCACCAGAGCG
AGCCGGTCCACGTCAGCCCCGCCTCCTCCAGGCCCTCCAGCTCCTCGCCC
ACCCAGCAACACGTCCTGCTGAAGCTAAACACCTCCATCGAGACGAGCTC
CATCCACGAGCAGTCCGCCAGTGACGGCGACTCCGACGACGAGCAGATCG
ACGTGGTCAAATCGGAGTTCGACCTGGACAAGAGCCTGGATGTGGCGCCA
CTTCGCATGCGCTGCGACCTGAAGGCGCCCTCGGCCATGAAGCCGCTCTA
CCACGAGAGCGGTCCTGGAGCGGTAGCCAACAGCCGCCAGCCGTCGCCGG
AAACGACCACCAAGATCAAGAGCGCCGCCGTGCAGCAGAAGACCGTGTGG
CGGCCCTACTAGGGCATCTGATCCCCAAAAATCTGGAGGAATGAAGAAAA
CAAAGTGATATAACAGCGGCGACGCAGAGCGGCAAGCGGGCAAAAATTAT
AATTGTGATATAGTGTTATAAGTTACGACGCCTCCGGCCGGCAAACGGAG
CAGCCTCATCAGTGGGATAGAAGGATAAACGGCAGCGGGAGCAGCAGCAT
CAACTAGCTGAGCAAAAGTTATGGATAGAGGATAATGGATAATGGATATA
GGACAAAGGACCCCAATCCTGGAAATCAGACTCCGGCGAAGTTTTATGCT
CGGACTCATAAAATCGTGCGACGAGTTTGAATCACAGGCCCTCGATTTTC
ACCAGGATTTTTTACAAATCCCAGCAGAAAACACGAAAACTCAAAAACTC
AGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI19821.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20561194..20562410 939..2155 5965 99.3 Plus
chrX 22417052 chrX 20559838..20560776 1..939 4665 99.8 Plus
chrX 22417052 chrX 9180163..9180370 615..822 290 76 Plus
chrX 22417052 chrX 20407344..20407436 727..819 210 81.7 Plus
chrX 22417052 chrX 20469547..20469620 801..728 190 83.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20695811..20697037 939..2165 6120 99.9 Plus
X 23542271 X 20694455..20695393 1..939 4695 100 Plus
X 23542271 X 9288353..9288560 615..822 290 76 Plus
X 23542271 X 20541938..20542030 727..819 210 81.7 Plus
X 23542271 X 20604130..20604203 801..728 190 83.8 Minus
Blast to na_te.dros performed 2019-03-15 13:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6789..6855 1899..1964 115 69.1 Plus

FI19821.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:11:09 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20559838..20560775 1..938 95 -> Plus
chrX 20561194..20562410 939..2155 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-22 17:00:27 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
run-RB 1..1524 239..1762 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:58:31 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
run-RB 1..1524 239..1762 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:23:29 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
run-RB 1..1524 239..1762 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-22 17:00:27 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
run-RB 15..2169 1..2155 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:58:31 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
run-RB 15..2169 1..2155 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:23:29 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
run-RB 17..2171 1..2155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:09 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
X 20694455..20695392 1..938 100 -> Plus
X 20695811..20697027 939..2155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:09 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
X 20694455..20695392 1..938 100 -> Plus
X 20695811..20697027 939..2155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:09 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
X 20694455..20695392 1..938 100 -> Plus
X 20695811..20697027 939..2155 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:58:31 Download gff for FI19821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20565482..20566419 1..938 100 -> Plus
arm_X 20566838..20568054 939..2155 100   Plus

FI19821.hyp Sequence

Translation from 0 to 1761

> FI19821.hyp
DFSVSRTHREIYRFRLWKTETGSKEAEFEIAKQSNNNKQTNFFQVTPDKV
KCIPRIRNRKPAIVDSPRITATISTFGYEMHLPAGPTMVANNTQVLAAAA
AAAAAAAAAVAQGPGPQQSSNATTASAIAINPAQSLANTSTHSASSTGSS
TPDLSTNNTSSSSNATTSPQNSAKMPSSMTDMFASLHEMLQEYHGELAQT
GSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGTLVSIKCGNDENYCG
ELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQIASYSKA
IKVTVDGPREPRSYGYPHPGAFNPFMLNPAWLDAAYMTYGYADYFRHQAA
AQAAQVHHPALAKSSASSVSPNPNPSVATSSSSAVQPSEYPHPAAAVAAA
AGQPAAMMPSPPGAAPATPYAIPQFPFNHVAAAAAAKAATPHAFHPYNFA
AAAGLRARNAALHHQSEPVHVSPASSRPSSSSPTQQHVLLKLNTSIETSS
IHEQSASDGDSDDEQIDVVKSEFDLDKSLDVAPLRMRCDLKAPSAMKPLY
HESGPGAVANSRQPSPETTTKIKSAAVQQKTVWRPY*

FI19821.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
run-PB 507 CG1849-PB 1..507 80..586 2615 100 Plus
run-PC 510 CG1849-PC 1..510 80..586 2601 99.4 Plus
run-PA 510 CG1849-PA 1..510 80..586 2601 99.4 Plus
RunxB-PC 663 CG42267-PC 34..370 117..387 576 41.1 Plus
lz-PA 826 CG1689-PA 153..583 61..480 574 37.2 Plus

FI19821.pep Sequence

Translation from 1 to 1761

> FI19821.pep
DFSVSRTHREIYRFRLWKTETGSKEAEFEIAKQSNNNKQTNFFQVTPDKV
KCIPRIRNRKPAIVDSPRITATISTFGYEMHLPAGPTMVANNTQVLAAAA
AAAAAAAAAVAQGPGPQQSSNATTASAIAINPAQSLANTSTHSASSTGSS
TPDLSTNNTSSSSNATTSPQNSAKMPSSMTDMFASLHEMLQEYHGELAQT
GSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGTLVSIKCGNDENYCG
ELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQIASYSKA
IKVTVDGPREPRSYGYPHPGAFNPFMLNPAWLDAAYMTYGYADYFRHQAA
AQAAQVHHPALAKSSASSVSPNPNPSVATSSSSAVQPSEYPHPAAAVAAA
AGQPAAMMPSPPGAAPATPYAIPQFPFNHVAAAAAAKAATPHAFHPYNFA
AAAGLRARNAALHHQSEPVHVSPASSRPSSSSPTQQHVLLKLNTSIETSS
IHEQSASDGDSDDEQIDVVKSEFDLDKSLDVAPLRMRCDLKAPSAMKPLY
HESGPGAVANSRQPSPETTTKIKSAAVQQKTVWRPY*

FI19821.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15970-PA 552 GF15970-PA 1..552 80..586 1640 74.1 Plus
Dana\GF15967-PA 684 GF15967-PA 129..300 189..359 562 61 Plus
Dana\GF15983-PA 666 GF15983-PA 90..225 180..313 524 68.4 Plus
Dana\GF21771-PA 832 GF21771-PA 276..398 191..313 519 75.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\run-PA 514 GG19696-PA 1..514 80..586 2592 97.5 Plus
Dere\GG19691-PA 671 GG19691-PA 126..297 189..359 562 61 Plus
Dere\GG17578-PA 757 GG17578-PA 191..326 180..313 525 68.4 Plus
Dere\GG18309-PA 837 GG18309-PA 299..421 191..313 510 75.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17740-PA 563 GH17740-PA 1..563 80..586 1431 64.5 Plus
Dgri\GH17737-PA 268 GH17737-PA 111..261 189..336 558 67.8 Plus
Dgri\GH17774-PA 232 GH17774-PA 91..226 180..313 522 68.4 Plus
Dgri\GH11831-PA 344 GH11831-PA 96..183 186..273 324 67 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
run-PB 507 CG1849-PB 1..507 80..586 2615 100 Plus
run-PC 510 CG1849-PC 1..510 80..586 2601 99.4 Plus
run-PA 510 CG1849-PA 1..510 80..586 2601 99.4 Plus
RunxB-PC 663 CG42267-PC 34..370 117..387 576 41.1 Plus
lz-PA 826 CG1689-PA 153..583 61..480 574 37.2 Plus
RunxA-PB 646 CG34145-PB 6..215 119..313 550 54.3 Plus
RunxA-PC 651 CG34145-PC 6..215 119..313 550 54.3 Plus
RunxA-PD 663 CG34145-PD 6..215 119..313 550 54.3 Plus
lz-PB 705 CG1689-PB 153..465 61..385 545 42.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15491-PA 578 GI15491-PA 1..578 80..586 1445 63.2 Plus
Dmoj\GI15119-PA 513 GI15119-PA 87..222 180..313 522 68.4 Plus
Dmoj\GI14398-PA 752 GI14398-PA 182..314 188..320 520 72.9 Plus
Dmoj\GI15484-PA 199 GI15484-PA 105..195 189..279 393 72.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15806-PA 561 GL15806-PA 1..561 80..586 1517 65.4 Plus
Dper\GL15800-PA 290 GL15800-PA 111..261 189..336 558 67.8 Plus
Dper\GL15927-PA 635 GL15927-PA 69..204 180..313 525 68.4 Plus
Dper\GL16499-PA 867 GL16499-PA 266..388 191..313 516 75.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\run-PA 558 GA14956-PA 1..558 80..586 1542 69.1 Plus
Dpse\GA13742-PA 301 GA13742-PA 126..276 189..336 559 67.8 Plus
Dpse\GA25684-PA 569 GA25684-PA 3..138 180..313 524 68.4 Plus
Dpse\GA22609-PA 868 GA22609-PA 275..397 191..313 516 75.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23050-PA 510 GM23050-PA 1..510 80..586 2636 98.8 Plus
Dsec\GM23044-PA 293 GM23044-PA 99..242 189..329 561 69.7 Plus
Dsec\GM22662-PA 535 GM22662-PA 361..516 180..325 523 62.2 Plus
Dsec\GM22478-PA 816 GM22478-PA 278..400 191..313 512 75.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\run-PA 510 GD17500-PA 1..510 80..586 2632 98.6 Plus
Dsim\GD17495-PA 657 GD17495-PA 113..284 189..359 564 61 Plus
Dsim\GD16951-PA 331 GD16951-PA 74..196 198..320 485 73.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\run-PA 542 GJ19252-PA 1..542 80..586 1480 66.8 Plus
Dvir\GJ19245-PA 307 GJ19245-PA 120..270 189..336 560 67.8 Plus
Dvir\GJ18917-PA 531 GJ18917-PA 83..218 180..313 526 68.4 Plus
Dvir\GJ18742-PA 655 GJ18742-PA 104..229 188..313 521 75.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19815-PA 510 GK19815-PA 122..416 173..431 984 70 Plus
Dwil\GK19810-PA 259 GK19810-PA 102..252 189..336 560 67.8 Plus
Dwil\GK20052-PA 277 GK20052-PA 88..223 180..313 523 68.4 Plus
Dwil\GK25373-PA 689 GK25373-PA 135..272 192..329 522 71 Plus
Dwil\GK19815-PA 510 GK19815-PA 415..510 508..586 277 63.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\run-PA 520 GE17894-PA 1..520 80..586 2593 96.7 Plus
Dyak\GE17890-PA 699 GE17890-PA 119..290 189..359 563 61 Plus
Dyak\GE15340-PA 378 GE15340-PA 205..340 180..313 517 68.4 Plus
Dyak\GE17788-PA 832 GE17788-PA 283..405 191..313 509 75.6 Plus