Clone FI19835 Report

Search the DGRC for FI19835

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:198
Well:35
Vector:pOT2
Associated Gene/Transcriptdyl-RA
Protein status:FI19835.pep: gold
Sequenced Size:2621

Clone Sequence Records

FI19835.complete Sequence

2621 bp assembled on 2012-04-06

GenBank Submission: BT133367.1

> FI19835.complete
TTAGCCAGGCCAAGACGCTTTTGGGCCACTGTTAAGCCGATGGCCGAGTA
ATGCTAGAGTGCGACTGTTAAACACGCCACACCAAAAATCAAACAGCAGC
ACACCAGCAGCAGCGAAGAAGAAAGCCGCAGAGCGAGGCCGAGTAGCGAA
ATCCAAAAATCCACATTTTTGGTTTCCAGGGCGTCAATTTGGAATTTCAA
TTTCAAGCCAACCACCACACACACACACACACACACAACCAGATCAAAAT
GGGACACCTGACGCGACGCAGCAGCCTAATGGCCATAGTCCTGTGCCTGG
TACTCAACACACAGCACCTGTCGGTGCATGGCGATGCCTCGCACATTGAG
TCCGCCGCCCTGCCACTCGAACACAGGGCCGGCTACGGTCCACCGGCGCC
CATTTACGGTGCGCCCCAGGGACCACTGAGCACCGGAGCCACCAACGATG
TGTCCGAGGAGGCATGGCCCCTCGCCAGCACCAACGACAGTCCGCAGATC
AAGCACCTGCAGGTGCAGTGCGAGAAGACCCACATGCGGGTGAACATCGA
GTTCGACCGACCTTTCTACGGCATGATCTTCTCCAAGGGATTCTACAGTG
ATCCACACTGCGTGCACCTGAAGCCCGGCACCGGCCACCTGAGCGCCACC
TTTGAGATCTTCCTGAATAGCTGCGGCATGACCAGCTCGGCCAACCACAA
TGCCGCCGGCTATGGAGCGCCCACGCCATCGGGCAGCTATGTGGAGAACA
CGATCATCATCCAGTACGATCCCTATGTGCAGGAGGTGTGGGATCAGGCC
AGGAAGCTGCGCTGCACCTGGTACGATTTCTACGAGAAGGCCGTCACCTT
CAGGCCCTTCCAGGTGGACATGCTGCATGCGGTGACCGCTAACTTCCTGG
GCGACAACCTGCAGTGCTGGATGCAAATCCAGGTGGGCAAGGGACCCTGG
GCCTCCGAGGTTTCGGGCATTGTCAAGATCGGACAGACGATGACCATGGT
GCTGGCCATCAAGGATGATGAAAACAAATTCGATATGCTAGTGCGCAACT
GTGTGGCCCACGACGGCAAGCGGGCTCCCATCCAGCTGGTGGATCAGAAT
GGCTGCGTTGTCAGGCCCAAGATCATGAGCAAGTTCCAGAAGATCAAGAA
CTTCGGACCCTCCGCATCGGTGGTTAGCTTCGCCTACTTCCAGGCCTTCA
AGTTCCCCGACTCGATGAATGTGCACTTCCAGTGCGTCATCCAGGTGTGC
CGCTACAACTGTCCCGAGCCCAAGTGCGGTCCCGGTTTGCCGGGTGGCGA
GTACGGTCTGCCCCAGATTGGAGCCAACGGTCTGTCCGAGGAGTATGGTC
CCCCAGAGGCATATGAGCGCAACGATTTCGCCCTGGGCGGGCCCGGAGTT
CTGCCACCAGCAGCCTATCCTGATCCACGTCACCCTGCCTCCGATGCCAC
TGGAGCGTACTCTGAGAACCAACCGGATGTGGTGCCCTCGCCCCAGGCTC
AGACATCGGCGGCAGTGCCCACTGCTGACTCGGGAACCGTTTCCGGACCT
GCCAGCTCCCAGTCGCCACAGCCTCAGCCCACTGGCAGCAACGAACTGGG
TCTGCCGCCACCACCACTGCCAGGACAGAGCGGTCAGTACAGCACGGTGA
AGCGCAAGGATGACCTGAGTGCCGGTGGCAACCTGGTTTCCTTGGGCGGA
CGCCCACGCTCCGTGGAGGGACTGGACGATCTGCGCGGCGTGCGAAGGCG
CAGAGACACCATGGACATTGTGGTGAAGCCACAGAGGATCTACAAGAGGA
ACGCGCAGGAGATGACCGATGTGAACACCAGCCGAATTATCCAGGTGGTG
GCGCCCGGAGACGTTAACTTTGCGCTGAACAGCAATGCCAGCAACGAGAC
GGTGGTCATCCAGTCGGCCAGGTCCGCGGATGCGGAGACCATCTGCATGT
CGGTGCCCAGCTTTGTGGGCGGATTGGTGATGCTGCTGCTCGTCCTGGCC
GTCGCCTCTCTAGTCGCCGCCTTCCTCTTCGTCCGCGTGCGTCACTTCGA
TCGCAAGGGAGCGGGCATGGCCTATGTGAACTAAGGATCTGAAATCGGGC
CAGAGGACCGGACCATCATCACCATCAACAGCGACCGATCGGCGTGAACA
GAAAACCAAATCAGTTTTATGTGCACTTCAGAAACACTCATTCCAAACCC
ATTCCCCATAGGCACCCCCCATCCCATAACTATTTATTCTTTGGTTATTT
ATTGAGATCCCACAATCCGCCACTTTCAAATGGTTTCCTACTTTACCACT
ACGCTCTATCCTTCATATGTTTCCCTAGTTTTAGGCAAAGCGAAATTGAA
TTGTCAGACTTGTTAAGTTTCAGTTATACCTACGCGGGATTTGAGGCCAT
CTGAACGAACAGATTAGCCTCGAATGTTACAATATGCAAGTTAATAATAT
CGAGAAAATAAACACAAACGAAGTAATGAAGCGGCAAACATGGAAAGGCA
GAAAATCGTTTACAATAAGTTAATATAGCAAATGTATATATTAAATTATT
TATTTATTACTTTATTTGATAGCTGCGAAATAATAAAAAGTTTACTTTTA
TTAAAAAAAAAAAAAAAAAAA

FI19835.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4293390..4295682 2602..310 11405 99.8 Minus
chr3L 24539361 chr3L 4297915..4298146 314..74 1035 96.3 Minus
chrX 22417052 chrX 11662710..11663235 1269..744 920 78.3 Minus
chr3L 24539361 chr3L 4298720..4298792 73..1 365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4294002..4296296 2604..310 11475 100 Minus
3L 28110227 3L 4298530..4298770 314..74 1205 100 Minus
X 23542271 X 11771523..11772048 1269..744 920 78.3 Minus
3L 28110227 3L 4299344..4299416 73..1 365 100 Minus
Blast to na_te.dros performed 2019-03-15 13:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 8363..8530 2423..2590 147 62.4 Plus
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 5237..5313 2602..2524 137 67.1 Minus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1037..1103 2600..2533 121 68.1 Minus

FI19835.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:23:41 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4293390..4295677 315..2602 98 <- Minus
chr3L 4297915..4298146 74..314 87 <- Minus
chr3L 4298720..4298792 1..73 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-06 12:50:43 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
dyl-RC 1..1836 249..2084 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:22 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
dyl-RB 1..1836 249..2084 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:28:38 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
dyl-RB 1..1836 249..2084 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 12:50:43 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
dyl-RA 88..2689 1..2602 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:22 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
dyl-RA 89..2690 1..2602 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:28:38 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
dyl-RA 89..2690 1..2602 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:41 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4294004..4296291 315..2602 100 <- Minus
3L 4298530..4298770 74..314 100 <- Minus
3L 4299344..4299416 1..73 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:41 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4294004..4296291 315..2602 100 <- Minus
3L 4298530..4298770 74..314 100 <- Minus
3L 4299344..4299416 1..73 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:41 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4294004..4296291 315..2602 100 <- Minus
3L 4298530..4298770 74..314 100 <- Minus
3L 4299344..4299416 1..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:22 Download gff for FI19835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4298530..4298770 74..314 100 <- Minus
arm_3L 4299344..4299416 1..73 100   Minus
arm_3L 4294004..4296291 315..2602 100 <- Minus

FI19835.hyp Sequence

Translation from 248 to 2083

> FI19835.hyp
MGHLTRRSSLMAIVLCLVLNTQHLSVHGDASHIESAALPLEHRAGYGPPA
PIYGAPQGPLSTGATNDVSEEAWPLASTNDSPQIKHLQVQCEKTHMRVNI
EFDRPFYGMIFSKGFYSDPHCVHLKPGTGHLSATFEIFLNSCGMTSSANH
NAAGYGAPTPSGSYVENTIIIQYDPYVQEVWDQARKLRCTWYDFYEKAVT
FRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWASEVSGIVKIGQTMTM
VLAIKDDENKFDMLVRNCVAHDGKRAPIQLVDQNGCVVRPKIMSKFQKIK
NFGPSASVVSFAYFQAFKFPDSMNVHFQCVIQVCRYNCPEPKCGPGLPGG
EYGLPQIGANGLSEEYGPPEAYERNDFALGGPGVLPPAAYPDPRHPASDA
TGAYSENQPDVVPSPQAQTSAAVPTADSGTVSGPASSQSPQPQPTGSNEL
GLPPPPLPGQSGQYSTVKRKDDLSAGGNLVSLGGRPRSVEGLDDLRGVRR
RRDTMDIVVKPQRIYKRNAQEMTDVNTSRIIQVVAPGDVNFALNSNASNE
TVVIQSARSADAETICMSVPSFVGGLVMLLLVLAVASLVAAFLFVRVRHF
DRKGAGMAYVN*

FI19835.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
dyl-PC 611 CG15013-PC 1..611 1..611 3239 100 Plus
dyl-PA 611 CG15013-PA 1..611 1..611 3239 100 Plus
dyl-PB 611 CG15013-PB 1..611 1..611 3239 100 Plus
dy-PA 699 CG9355-PA 227..532 60..369 1031 63.3 Plus
m-PA 682 CG9369-PA 35..326 71..376 672 41.8 Plus

FI19835.pep Sequence

Translation from 248 to 2083

> FI19835.pep
MGHLTRRSSLMAIVLCLVLNTQHLSVHGDASHIESAALPLEHRAGYGPPA
PIYGAPQGPLSTGATNDVSEEAWPLASTNDSPQIKHLQVQCEKTHMRVNI
EFDRPFYGMIFSKGFYSDPHCVHLKPGTGHLSATFEIFLNSCGMTSSANH
NAAGYGAPTPSGSYVENTIIIQYDPYVQEVWDQARKLRCTWYDFYEKAVT
FRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWASEVSGIVKIGQTMTM
VLAIKDDENKFDMLVRNCVAHDGKRAPIQLVDQNGCVVRPKIMSKFQKIK
NFGPSASVVSFAYFQAFKFPDSMNVHFQCVIQVCRYNCPEPKCGPGLPGG
EYGLPQIGANGLSEEYGPPEAYERNDFALGGPGVLPPAAYPDPRHPASDA
TGAYSENQPDVVPSPQAQTSAAVPTADSGTVSGPASSQSPQPQPTGSNEL
GLPPPPLPGQSGQYSTVKRKDDLSAGGNLVSLGGRPRSVEGLDDLRGVRR
RRDTMDIVVKPQRIYKRNAQEMTDVNTSRIIQVVAPGDVNFALNSNASNE
TVVIQSARSADAETICMSVPSFVGGLVMLLLVLAVASLVAAFLFVRVRHF
DRKGAGMAYVN*

FI19835.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24738-PA 612 GF24738-PA 1..612 1..611 3201 97.1 Plus
Dana\GF20249-PA 709 GF20249-PA 232..537 60..369 1050 63.3 Plus
Dana\GF20431-PA 679 GF20431-PA 35..301 71..349 668 42.7 Plus
Dana\GF25071-PA 596 GF25071-PA 169..463 54..343 412 29.7 Plus
Dana\GF25319-PB 940 GF25319-PB 57..306 84..338 389 31.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14194-PA 611 GG14194-PA 1..611 1..611 3280 99.7 Plus
Dere\GG18833-PA 693 GG18833-PA 221..526 60..369 1053 63.3 Plus
Dere\GG18442-PA 681 GG18442-PA 35..290 71..338 662 43.3 Plus
Dere\GG15228-PA 613 GG15228-PA 221..481 79..343 404 29.7 Plus
Dere\GG16112-PA 1581 GG16112-PA 55..304 84..338 392 31.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15425-PA 611 GH15425-PA 1..611 1..611 2833 93 Plus
Dgri\GH24587-PA 707 GH24587-PA 233..540 60..369 1036 62.2 Plus
Dgri\GH24389-PA 711 GH24389-PA 35..329 71..380 666 41 Plus
Dgri\GH14786-PA 2192 GH14786-PA 56..305 84..338 416 31.3 Plus
Dgri\GH15681-PA 600 GH15681-PA 178..472 54..343 413 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
dyl-PC 611 CG15013-PC 1..611 1..611 3239 100 Plus
dyl-PA 611 CG15013-PA 1..611 1..611 3239 100 Plus
dyl-PB 611 CG15013-PB 1..611 1..611 3239 100 Plus
dy-PA 699 CG9355-PA 227..532 60..369 1031 63.3 Plus
m-PA 682 CG9369-PA 35..326 71..376 672 41.8 Plus
CG15020-PA 604 CG15020-PA 144..472 27..343 400 28 Plus
zye-PA 2284 CG5847-PA 27..401 64..455 377 27.3 Plus
neo-PB 744 CG7802-PB 365..624 74..352 183 25.4 Plus
neo-PA 744 CG7802-PA 365..624 74..352 183 25.4 Plus
dpy-PM 8579 CG33196-PM 8204..8441 89..344 181 28.4 Plus
dpy-PX 14825 CG33196-PX 14450..14687 89..344 181 28.4 Plus
dpy-PJ 15105 CG33196-PJ 14730..14967 89..344 181 28.4 Plus
dpy-PI 15638 CG33196-PI 15263..15500 89..344 181 28.4 Plus
dpy-PZ 15998 CG33196-PZ 15623..15860 89..344 181 28.4 Plus
dpy-PW 18014 CG33196-PW 17639..17876 89..344 181 28.4 Plus
dpy-PY 18095 CG33196-PY 17720..17957 89..344 181 28.4 Plus
dpy-PS 18641 CG33196-PS 18266..18503 89..344 181 28.4 Plus
dpy-PAA 19560 CG33196-PAA 19185..19422 89..344 181 28.4 Plus
dpy-PV 20404 CG33196-PV 20029..20266 89..344 181 28.4 Plus
dpy-PP 20710 CG33196-PP 20335..20572 89..344 181 28.4 Plus
dpy-PU 21657 CG33196-PU 21282..21519 89..344 181 28.4 Plus
dpy-PT 22300 CG33196-PT 21925..22162 89..344 181 28.4 Plus
dpy-PO 22743 CG33196-PO 22368..22605 89..344 181 28.4 Plus
dpy-PR 22830 CG33196-PR 22455..22692 89..344 181 28.4 Plus
dpy-PQ 22949 CG33196-PQ 22574..22811 89..344 181 28.4 Plus
mey-PB 774 CG12063-PB 376..641 61..343 160 24.2 Plus
mey-PA 774 CG12063-PA 376..641 61..343 160 24.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13026-PA 613 GI13026-PA 1..613 1..611 2716 90.6 Plus
Dmoj\GI15258-PA 719 GI15258-PA 248..554 60..369 1048 62.4 Plus
Dmoj\GI15329-PA 664 GI15329-PA 35..319 71..380 668 41 Plus
Dmoj\GI11840-PA 2351 GI11840-PA 56..305 84..338 419 31.7 Plus
Dmoj\GI12727-PA 600 GI12727-PA 175..469 54..343 411 29.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16287-PA 611 GL16287-PA 4..611 3..611 3148 96.2 Plus
Dper\GL15227-PA 491 GL15227-PA 15..337 60..398 1059 59.2 Plus
Dper\GL15150-PA 559 GL15150-PA 35..290 71..338 658 43.3 Plus
Dper\GL17896-PA 606 GL17896-PA 177..471 54..343 412 29.7 Plus
Dper\GL11883-PA 304 GL11883-PA 29..284 66..321 343 31.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13432-PA 611 GA13432-PA 4..611 3..611 3148 96.2 Plus
Dpse\GA21724-PA 852 GA21724-PA 376..685 60..369 1057 62.8 Plus
Dpse\GA22785-PA 698 GA22785-PA 35..290 71..338 664 43.3 Plus
Dpse\GA13439-PA 606 GA13439-PA 177..471 54..343 412 29.7 Plus
Dpse\GA23353-PA 2214 GA23353-PA 50..301 84..338 400 30.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13985-PA 611 GM13985-PA 1..611 1..611 3286 100 Plus
Dsec\GM13046-PA 856 GM13046-PA 384..689 60..369 1055 63.3 Plus
Dsec\GM13107-PA 664 GM13107-PA 35..290 71..338 666 43.7 Plus
Dsec\GM14659-PA 604 GM14659-PA 144..472 27..343 410 27.7 Plus
Dsec\GM22290-PA 612 GM22290-PA 54..304 83..338 390 31.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13266-PA 611 GD13266-PA 1..611 1..611 3286 100 Plus
Dsim\dy-PA 699 GD15971-PA 227..532 60..369 1022 61 Plus
Dsim\GD17048-PA 678 GD17048-PA 35..290 71..338 665 43.7 Plus
Dsim\GD13844-PA 602 GD13844-PA 144..470 27..343 412 27.8 Plus
Dsim\GD14884-PA 1004 GD14884-PA 54..304 83..338 393 31.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12122-PA 611 GJ12122-PA 1..611 1..611 2760 92.7 Plus
Dvir\GJ14830-PA 741 GJ14830-PA 264..583 60..398 1023 58.9 Plus
Dvir\GJ14767-PA 673 GJ14767-PA 35..319 71..380 669 41.3 Plus
Dvir\GJ12714-PA 598 GJ12714-PA 173..467 54..343 416 30 Plus
Dvir\GJ13539-PA 933 GJ13539-PA 56..305 84..338 416 31.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10912-PA 612 GK10912-PA 1..612 1..611 2947 95.6 Plus
Dwil\GK16283-PA 687 GK16283-PA 198..509 60..369 1010 60.9 Plus
Dwil\GK16317-PA 672 GK16317-PA 35..290 71..338 667 43.7 Plus
Dwil\GK16582-PA 590 GK16582-PA 161..455 54..343 404 29 Plus
Dwil\GK16962-PA 2396 GK16962-PA 53..304 84..338 399 32.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20624-PA 611 GE20624-PA 1..611 1..611 3280 99.7 Plus
Dyak\GE17598-PA 725 GE17598-PA 251..556 60..369 1058 63.6 Plus
Dyak\GE15664-PA 685 GE15664-PA 35..290 71..338 662 43.3 Plus
Dyak\GE21447-PA 605 GE21447-PA 217..473 83..343 404 30.2 Plus
Dyak\GE19679-PA 1042 GE19679-PA 54..304 83..338 399 32.2 Plus