Clone FI19875 Report

Search the DGRC for FI19875

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:198
Well:75
Vector:pOT2
Associated Gene/TranscriptPpD5-RA
Protein status:FI19875.pep: gold
Sequenced Size:1236

Clone Sequence Records

FI19875.complete Sequence

1236 bp assembled on 2012-03-21

GenBank Submission: BT133328.1

> FI19875.complete
TCCATCCGTAATTCAGAAATAAGAAAACGATGTCTCGTCGTTCGACCGTT
TTATCAACTGGTAAGGAGAGCTCCAAGGAGGAAAAGAATCGAATGTCCCA
ATTGGACGTTATTATCGGTCAACTGAAGACGATGGCGGTTGGAAACCGGA
GGGCCGGAAATCTATCCGAGGCCACCATCACATATATATGCCAGGCGAGC
CGAGAGCTGTTTCTATCCCAGCCGATGCTCCTCGAACTGAGTGCTCCGGT
AAAGATCTGCGGGGATCTGCACGGTCAGTTCAAGGATCTATTGAGGATAT
TCCAGCAGTGCGGTGTGCCACCGCTTTCAAACTACCTATTCCTTGGGGAT
TACGTGGATCGGGGTCACTGCTCCATCGAGACTTTATCGCTGCTGTTGAC
CTATAAGCTTCGCTATCCGGAGACTTTCTTCCTGCTGCGCGGCAATCATG
AATCGGCGGATTTGAATCGGGTATATGGGTTTTTCGACGAGTGCAAGCGA
CGATATAGCATCAAGTTGTGGCGCTCCTTTGTCGATTGCTATGACTGCAT
GCCAGTGGCCGCCATCATAGCCGATCGCATCTTTTGCGTCCACGGCGGAC
TGAGTCCGGATCTGAATAACCTGGATGACATCCGGCGGCTGAATCGCCCC
ACCGATGTGCCCAGCGATGGGCTGCTGTGCGATTTGCTTTGGTCGGATCC
GGATGAGACCACCGGAACGTGGGCGTCCAACGATCGAGGTGTCAGCTTCA
CCTTTGGAGCCAACATAGTGGAGGGCTTCCTCATGCAGCACAAGTTTAAC
CTGATTGTCCGCGCCCACCAAGTGGTCGAGGATGGCTACGAGTTCTTCGC
CGACCGCCAGTTGGTCACCATTTTCTCGGCCCCGAACTACTGCGACATCT
TTGATAACTGCGGAGCTGTTCTGGTGGTGGACGCCAAACTGGTCTGCCAC
TTTGTCATCATCCGTCCGAGACCGTTTTCGCGACCCACGGGCTTTGAGTC
GGATAGTGGATCTACAGCTACGGCGACCAATGGACCACCGCCGTCCATGA
GGGAGAAGAGGCTTTATTAGGTTTGTTCGTTCAATATTTTATATTTTATA
TTTTATTGCTCTTGTTTTTGAATCGATTATTTTGCTTTCAATTGCGGCTT
AATCGAAGGACAATTGAAGGTCGGGCAGACCCCAAAGAAAAGTGTAATAA
ATCTTCATTTAAATTTAAAAAAAAAAAAAAAAAAAA

FI19875.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17928048..17929263 1216..1 6080 100 Minus
chr3R 27901430 chr3R 8250263..8250739 894..418 345 71.5 Minus
chr2L 23010047 chr2L 3109830..3110015 431..616 345 79 Plus
chr2R 21145070 chr2R 17767983..17768061 894..816 290 91.1 Minus
chrX 22417052 chrX 15249460..15249940 894..414 245 70.1 Minus
chr2L 23010047 chr2L 3110212..3110288 813..889 220 85.7 Plus
chr2R 21145070 chr2R 13842876..13842960 894..810 215 83.5 Minus
chr2R 21145070 chr2R 17768263..17768392 614..485 185 76.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22041665..22042882 1218..1 6090 100 Minus
3R 32079331 3R 12424875..12425351 894..418 345 71.5 Minus
2L 23513712 2L 3110142..3110327 431..616 345 79 Plus
2R 25286936 2R 21881590..21881668 894..816 290 91.1 Minus
X 23542271 X 15359524..15359944 894..474 245 70.5 Minus
2L 23513712 2L 3110524..3110600 813..889 220 85.7 Plus
2R 25286936 2R 17955681..17955765 894..810 215 83.5 Minus
2R 25286936 2R 21881870..21881999 614..485 185 76.2 Minus
Blast to na_te.dros performed 2019-03-15 13:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 767..816 423..372 111 71.2 Minus

FI19875.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:09:04 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17928048..17929263 1..1216 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-21 19:51:07 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
PpD5-RA 1..1041 30..1070 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:57:26 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
PpD5-RA 1..1041 30..1070 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:21:46 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
PpD5-RA 1..1041 30..1070 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-21 19:51:07 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
PpD5-RA 1..1216 1..1216 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:57:26 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
PpD5-RA 64..1279 1..1216 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:21:46 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
PpD5-RA 64..1279 1..1216 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:04 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22041667..22042882 1..1216 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:04 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22041667..22042882 1..1216 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:04 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22041667..22042882 1..1216 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:57:26 Download gff for FI19875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17929172..17930387 1..1216 100   Minus

FI19875.hyp Sequence

Translation from 29 to 1069

> FI19875.hyp
MSRRSTVLSTGKESSKEEKNRMSQLDVIIGQLKTMAVGNRRAGNLSEATI
TYICQASRELFLSQPMLLELSAPVKICGDLHGQFKDLLRIFQQCGVPPLS
NYLFLGDYVDRGHCSIETLSLLLTYKLRYPETFFLLRGNHESADLNRVYG
FFDECKRRYSIKLWRSFVDCYDCMPVAAIIADRIFCVHGGLSPDLNNLDD
IRRLNRPTDVPSDGLLCDLLWSDPDETTGTWASNDRGVSFTFGANIVEGF
LMQHKFNLIVRAHQVVEDGYEFFADRQLVTIFSAPNYCDIFDNCGAVLVV
DAKLVCHFVIIRPRPFSRPTGFESDSGSTATATNGPPPSMREKRLY*

FI19875.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
PpD5-PA 346 CG10138-PA 1..346 1..346 1834 100 Plus
Pp1-Y2-PC 313 CG40448-PC 14..300 29..313 1051 67.6 Plus
Pp1alpha-96A-PB 327 CG6593-PB 7..296 25..313 1039 65.1 Plus
Pp1alpha-96A-PA 327 CG6593-PA 7..296 25..313 1039 65.1 Plus
Pp1-87B-PA 302 CG5650-PA 7..296 25..313 1035 65.1 Plus

FI19875.pep Sequence

Translation from 29 to 1069

> FI19875.pep
MSRRSTVLSTGKESSKEEKNRMSQLDVIIGQLKTMAVGNRRAGNLSEATI
TYICQASRELFLSQPMLLELSAPVKICGDLHGQFKDLLRIFQQCGVPPLS
NYLFLGDYVDRGHCSIETLSLLLTYKLRYPETFFLLRGNHESADLNRVYG
FFDECKRRYSIKLWRSFVDCYDCMPVAAIIADRIFCVHGGLSPDLNNLDD
IRRLNRPTDVPSDGLLCDLLWSDPDETTGTWASNDRGVSFTFGANIVEGF
LMQHKFNLIVRAHQVVEDGYEFFADRQLVTIFSAPNYCDIFDNCGAVLVV
DAKLVCHFVIIRPRPFSRPTGFESDSGSTATATNGPPPSMREKRLY*

FI19875.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11601-PA 354 GF11601-PA 1..333 1..328 1431 78.1 Plus
Dana\GF17044-PA 302 GF17044-PA 4..296 22..313 1052 64.7 Plus
Dana\GF20754-PA 327 GF20754-PA 6..296 24..313 1048 64.8 Plus
Dana\GF21042-PA 302 GF21042-PA 7..296 25..313 1027 64 Plus
Dana\GF19336-PA 330 GF19336-PA 28..297 44..313 1022 65.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20728-PA 346 GG20728-PA 1..346 1..346 1708 90.2 Plus
Dere\GG12985-PA 313 GG12985-PA 14..300 29..313 1067 67.9 Plus
Dere\GG11298-PA 327 GG11298-PA 6..296 24..313 1049 64.8 Plus
Dere\GG17127-PA 302 GG17127-PA 7..296 25..313 1041 65.1 Plus
Dere\GG18356-PA 462 GG18356-PA 135..429 18..313 1029 60.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18826-PA 327 GH18826-PA 6..327 24..343 1051 61.3 Plus
Dgri\GH17464-PA 302 GH17464-PA 7..296 25..313 1049 65.1 Plus
Dgri\GH17947-PA 302 GH17947-PA 3..296 21..313 1032 62.8 Plus
Dgri\GH12016-PA 456 GH12016-PA 129..423 18..313 1031 60.5 Plus
Dgri\GH21132-PA 319 GH21132-PA 16..304 23..313 1021 63.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
PpD5-PA 346 CG10138-PA 1..346 1..346 1834 100 Plus
Pp1-Y2-PC 313 CG40448-PC 14..300 29..313 1051 67.6 Plus
Pp1alpha-96A-PB 327 CG6593-PB 7..296 25..313 1039 65.1 Plus
Pp1alpha-96A-PA 327 CG6593-PA 7..296 25..313 1039 65.1 Plus
Pp1-87B-PA 302 CG5650-PA 7..296 25..313 1035 65.1 Plus
flw-PA 461 CG2096-PA 134..428 18..313 1012 60.5 Plus
flw-PC 330 CG2096-PC 29..297 45..313 1010 65.4 Plus
flw-PB 330 CG2096-PB 29..297 45..313 1010 65.4 Plus
Pp1-13C-PA 302 CG9156-PA 7..296 25..313 1009 63.4 Plus
PpY-55A-PB 314 CG10930-PB 8..294 24..313 937 58.6 Plus
PpY-55A-PA 314 CG10930-PA 8..294 24..313 937 58.6 Plus
PpD6-PA 336 CG8822-PA 52..319 45..312 935 61.6 Plus
Pp1-Y1-PC 317 CG41534-PC 17..304 25..314 928 59 Plus
PpN58A-PA 324 CG3245-PA 5..311 7..313 904 55 Plus
mts-PC 309 CG7109-PC 2..293 17..315 686 44 Plus
mts-PB 309 CG7109-PB 2..293 17..315 686 44 Plus
mts-PA 309 CG7109-PA 2..293 17..315 686 44 Plus
Pp4-19C-PI 307 CG32505-PI 5..290 23..315 653 42.9 Plus
Pp4-19C-PH 307 CG32505-PH 5..290 23..315 653 42.9 Plus
Pp4-19C-PG 307 CG32505-PG 5..290 23..315 653 42.9 Plus
Pp4-19C-PE 307 CG32505-PE 5..290 23..315 653 42.9 Plus
Pp4-19C-PA 307 CG32505-PA 5..290 23..315 653 42.9 Plus
PpV-PD 303 CG12217-PD 17..270 45..298 612 43.9 Plus
PpV-PC 303 CG12217-PC 17..270 45..298 612 43.9 Plus
PpV-PB 303 CG12217-PB 17..270 45..298 612 43.9 Plus
PpV-PA 303 CG12217-PA 17..270 45..298 612 43.9 Plus
CG11597-PC 317 CG11597-PC 10..285 22..302 601 43.6 Plus
CG11597-PB 317 CG11597-PB 10..285 22..302 601 43.6 Plus
CG11597-PA 317 CG11597-PA 10..285 22..302 601 43.6 Plus
Pp2B-14D-PB 570 CG9842-PB 120..388 43..298 588 42.8 Plus
Pp2B-14D-PC 570 CG9842-PC 120..388 43..298 588 42.8 Plus
Pp2B-14D-PA 570 CG9842-PA 120..388 43..298 588 42.8 Plus
CanA-14F-PD 584 CG9819-PD 128..396 43..298 588 42.4 Plus
CanA-14F-PC 584 CG9819-PC 128..396 43..298 588 42.4 Plus
CanA-14F-PB 584 CG9819-PB 128..396 43..298 588 42.4 Plus
CanA-14F-PA 584 CG9819-PA 128..396 43..298 588 42.4 Plus
CanA1-PB 596 CG1455-PB 94..362 43..298 561 41.3 Plus
CanA1-PD 622 CG1455-PD 94..362 43..298 561 41.3 Plus
CanA1-PA 622 CG1455-PA 94..362 43..298 561 41.3 Plus
PpD3-PC 520 CG8402-PC 244..486 63..300 512 42.2 Plus
PpD3-PA 520 CG8402-PA 244..486 63..300 512 42.2 Plus
PpD3-PB 520 CG8402-PB 244..486 63..300 512 42.2 Plus
rdgC-PB 661 CG44746-PB 101..406 21..309 444 33.8 Plus
rdgC-PI 677 CG44746-PI 117..422 21..309 444 33.8 Plus
rdgC-PH 746 CG44746-PH 186..491 21..309 444 33.8 Plus
rdgC-PG 746 CG44746-PG 186..491 21..309 444 33.8 Plus
rdgC-PF 746 CG44746-PF 186..491 21..309 444 33.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18758-PA 322 GI18758-PA 38..321 45..329 1134 70.9 Plus
Dmoj\GI22788-PA 302 GI22788-PA 7..296 25..313 1048 65.1 Plus
Dmoj\GI10084-PA 328 GI10084-PA 7..297 24..313 1048 64.8 Plus
Dmoj\GI15416-PA 303 GI15416-PA 7..296 25..313 1032 64 Plus
Dmoj\GI18733-PA 323 GI18733-PA 1..311 1..313 1026 60.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17499-PA 342 GL17499-PA 1..341 1..344 1216 67.6 Plus
Dper\GL27176-PA 302 GL27176-PA 7..296 25..313 1050 65.4 Plus
Dper\GL16957-PA 312 GL16957-PA 13..299 29..313 1050 67.2 Plus
Dper\GL14607-PA 298 GL14607-PA 6..295 23..314 959 57.5 Plus
Dper\GL14718-PA 298 GL14718-PA 6..292 23..311 959 57.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10102-PA 342 GA10102-PA 1..341 1..344 1212 67.3 Plus
Dpse\GA25003-PA 312 GA25003-PA 13..299 29..313 1054 67.6 Plus
Dpse\GA19032-PA 302 GA19032-PA 7..296 25..313 1050 65.4 Plus
Dpse\GA26434-PA 327 GA26434-PA 6..296 24..313 1048 64.8 Plus
Dpse\GA26586-PA 342 GA26586-PA 36..336 14..313 1036 62 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15672-PA 344 GM15672-PA 1..344 1..346 1809 97.7 Plus
Dsec\GM26605-PA 327 GM26605-PA 6..296 24..313 1049 64.8 Plus
Dsec\GM26010-PA 302 GM26010-PA 7..296 25..313 1044 65.1 Plus
Dsec\GM23981-PA 302 GM23981-PA 7..296 25..313 1022 63.4 Plus
Dsec\GM19939-PA 314 GM19939-PA 7..294 23..313 960 60.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15211-PA 344 GD15211-PA 1..344 1..346 1812 98 Plus
Dsim\GD21106-PA 327 GD21106-PA 6..296 24..313 1049 64.8 Plus
Dsim\GD20567-PA 302 GD20567-PA 7..296 25..313 1044 65.1 Plus
Dsim\GD15806-PA 302 GD15806-PA 7..296 25..313 1022 63.4 Plus
Dsim\GD14974-PA 311 GD14974-PA 6..293 25..314 948 59.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21782-PA 331 GJ21782-PA 13..307 21..314 1138 68.9 Plus
Dvir\GJ22791-PA 302 GJ22791-PA 7..296 25..313 1048 65.1 Plus
Dvir\GJ23819-PA 327 GJ23819-PA 6..296 24..313 1048 64.8 Plus
Dvir\GJ14803-PA 446 GJ14803-PA 119..413 18..313 1031 60.5 Plus
Dvir\GJ21755-PA 319 GJ21755-PA 18..306 23..313 1026 64.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15929-PA 313 GK15929-PA 12..300 23..313 1069 66.7 Plus
Dwil\GK12844-PA 302 GK12844-PA 7..296 25..313 1049 65.4 Plus
Dwil\GK22343-PA 327 GK22343-PA 6..296 24..313 1048 64.8 Plus
Dwil\GK20015-PA 302 GK20015-PA 7..296 25..313 1029 64 Plus
Dwil\GK20095-PA 456 GK20095-PA 130..456 18..342 1029 56.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13658-PA 346 GE13658-PA 1..346 1..346 1733 91.9 Plus
Dyak\GE19822-PA 313 GE19822-PA 14..300 29..313 1063 67.6 Plus
Dyak\GE23493-PA 329 GE23493-PA 29..298 44..313 1045 67.8 Plus
Dyak\GE24518-PA 302 GE24518-PA 7..296 25..313 1044 65.1 Plus
Dyak\GE16053-PA 302 GE16053-PA 7..296 25..313 1022 63.4 Plus