Clone FI19895 Report

Search the DGRC for FI19895

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:198
Well:95
Vector:pOT2
Associated Gene/TranscriptRhoGAP16F-RB
Protein status:FI19895.pep: gold
Sequenced Size:2626

Clone Sequence Records

FI19895.complete Sequence

2626 bp assembled on 2012-04-06

GenBank Submission: BT133383.1

> FI19895.complete
ATGTAAACAACGAACATTTGAAAATCGCTCTTCAGAAGATAATGCCATAT
CAGCGCTGCTGAGCCGGGAACTTCGTAGGGCAGCTGGCGGGGATCAGGAG
AATGTACCCCCTGTCCAGCAAACGGATCGCTTGGGAACACAAGACGCAGA
GCAATTTAAGTGGAAGGAATCCCCGGCAGGAGATGATGCACTGGTGGTCA
ATGAGGATGCATTTTAAGTGAAGAAGAACGAAATGGACACTGTGCTGGAC
TGTCTATACAGCGATAGCTAGAGCAGTCCAGCAAAAATGGGGGAACTCCT
GCTGCGTCGACTGATGCTCCAGTTTCTCCATGTGGAACAGCAGTCTAAGC
TCTGGAATTTGGACGGAAGGAACCACCGAAAATATCGCAATGTAAATCTG
CTAAATGAGTTCCTACACTTGACGTCACTGGGAAACGGGTGGAGAAGCAG
GAGACGAAGGGAAGGGCTCTCCCTCCACTGGTCAGCTGCTTCACTGGCGC
GGCGGCGATAAGCCCAAGTGCAGCCAATCGAGAAGAAGCCAGAGTGGAAA
GGGTGTTGCGAACAACCCGATAGCGCCAAGCCCAGCATCATGCAGACGAC
GACAAGTCAGCGGCCAGTAACGCCTGGCACTCCAGACTCGGCGCATATCG
TAATCGGCGCCGCGGGATTCGTGGCACACGAGAGACGCCAGCCCGGAAAG
ACCCTGATGAATTGCTTTCGCGATCGCTCCACGACGTCGTCGTCATCGTC
GCAGGCCCAACACGCCTATGTGCGCGGCCACAGCGTCACCTCGAGCACTC
TGTTTCGCCTGGAGGGCAGTGGTGGCTCCAATTGCACCTTGGACAAGGCG
GGCAAGCAGGATACCGGGCGGCCCGAGGCGGTCGTCCTACTCAGAGAGCT
GAAAACCAGACCCAACAAGCTGGCTCTGCTCAAGAGCAGCAGCAGCAAGG
ATCTGACCCGCCTGTTCCTGGACGATTCAACCAACACAGCCGTGCTGGTG
TCCAACACCAGTATAGATGTCTGCTCCTCAAATTCCAGCTCTGGCGGCAG
TCCGGCGGTGGGCAGGTCCAAGTCCGGCAGGGATCGCCGCAATGGACTGG
AGTGCTGCAGCAGCTGCTCCAAGCGTTGGCACGATCTCAAGCAGCGTATG
CACACTCTGGAGCAGGATCTGCTCGTCCAGACCACATACAGCCAAGAGCT
GGAGCAGAAGGTGGGCGAGATGAGTCGCCAGTTGACGGAACTGCTTCAGG
AACGCGACAGGGAGAGGGATAAGGATAAGGCGCGCTTTGCAGCCGCAGGC
GGCGTTGCTGCGCCTGGCAAGCGGACTGCTCACGGCAGTCCCAATGTCCG
ACCCTCGCGCCTGGTGGCCTGGATGAACCTGTCCAACTGGTTCAAGAGCA
GACCCAGCGTGGAAACGCTGCGGGAACAGCGCATCTTCTTCGACGAGCCC
TGCTTCGATACGGAACTGGAGATGGTCCTCAAGCACGACCAGCACCGCAC
TGTGCCGCGCATCGTTGTGGATTGCTGCGATCTAATCGAGCAAAAGTACC
GCAGATCTACGCAGCCCATCGAGGGCATCTATCGGCAGTGCGGCGACTAC
AATAAAATCCAAACGCTGCGCTTCAGCATCGACGCCAACGACTACGATTC
ACTGCGTCAGCCGGACGTCGATATACACACGTTGACCGGTGTGCTTAAGC
TCTTCCTGCGCGAAATCAAGAGTCCGTTGGTCAGGGTCAACGAGGCCAAG
ACCTTCATTGGACAGCCCAATCAGTGGTTGTTAACCGATCTGTCTGCGAA
GTTGGACTCCCTGAAAAGACTGATTCGTTCGCTGCCGGAGAGCAACCGGG
ACACCATGGACTACATCTTCGGTCACTTCAATAGAATAACCAAGGTGCCG
CTGCAGCAGATCAGCGCTGAAACGCTGTCCATATCGGTGACGCCGTCGAT
CTTTCACACGGTGCCACAGGGCGTCCACATGCAGGACATCCAGCAACTTT
TGCGCGAGGGCGAAACGCTGGCCGACTGCGTCAAGCTGATGATCGAGTAC
CAGGGGCGCATATTCGAGTAAGTGCGAGCCCCGCTGAGGAGGAACAGCCC
CAGTCTCCCAGGTGATGGTCCATTTGGTGTCCGGGCGCCCGCCGCTACTG
TTACCCACAAAACCCGAATCCCAGCCGCTTACGTCTCATCCAAACCGCTC
ACCTACTGTGCCGTTGTGTCGAACGCTTTGCTAACCACTCGAAATCCGAA
ATCCTCAACCCGAAACCGAACACCCCACTGTACCTGCCACACCTCTATAC
CCATTCCCGATTCGCTCCCGAATCTGTTTCCAATCCCGATCACATCGTCT
ACAGATGCACCGCCGATCGCCGCCGCCTGAGCATGCGCAACCTAAAGAAG
ACTCTGTCGCAGCCGGACCTGCTCTTTCACAATCTATTCTGAGCTGGCCC
AATGACATCCAATGGATCCTTCATCCCAGAGAGAGCACTGTACATATATG
GAATGACTTTACGCCCCGCTAGCAATTGTGTCCTAAGATTACTTTTTATA
TTCTTACTTTATCAACTAACTTTTGTACTTATGTTTACTAATATAAACAC
TAAAACTAAAAAAAAAAAAAAAAAAA

FI19895.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17984398..17985768 408..1778 6840 99.9 Plus
chrX 22417052 chrX 17986004..17986728 1883..2607 3625 100 Plus
chrX 22417052 chrX 17982476..17982772 1..297 1485 100 Plus
chrX 22417052 chrX 17982826..17982937 298..409 560 100 Plus
chrX 22417052 chrX 17985831..17985936 1779..1884 530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18095083..18096453 408..1778 6855 100 Plus
X 23542271 X 18096689..18097415 1883..2609 3635 100 Plus
X 23542271 X 18093161..18093457 1..297 1485 100 Plus
X 23542271 X 18093511..18093622 298..409 560 100 Plus
X 23542271 X 18096516..18096621 1779..1884 530 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:23:27 has no hits.

FI19895.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:24:08 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17982476..17982772 1..297 100 -> Plus
chrX 17982826..17982937 298..409 100 -> Plus
chrX 17984400..17985768 410..1778 99 -> Plus
chrX 17985831..17985936 1779..1884 100 -> Plus
chrX 17986006..17986728 1885..2607 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-06 12:50:47 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RB 1..1482 590..2071 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:52 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RC 1..1482 590..2071 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:29:39 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RC 1..1482 590..2071 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 12:50:47 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RB 1..2607 1..2607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:52 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RB 17..2623 1..2607 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:29:39 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RB 17..2623 1..2607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:08 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
X 18093161..18093457 1..297 100 -> Plus
X 18093511..18093622 298..409 100 -> Plus
X 18095085..18096453 410..1778 100 -> Plus
X 18096516..18096621 1779..1884 100 -> Plus
X 18096691..18097413 1885..2607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:08 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
X 18093161..18093457 1..297 100 -> Plus
X 18093511..18093622 298..409 100 -> Plus
X 18095085..18096453 410..1778 100 -> Plus
X 18096516..18096621 1779..1884 100 -> Plus
X 18096691..18097413 1885..2607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:08 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
X 18093161..18093457 1..297 100 -> Plus
X 18093511..18093622 298..409 100 -> Plus
X 18095085..18096453 410..1778 100 -> Plus
X 18096516..18096621 1779..1884 100 -> Plus
X 18096691..18097413 1885..2607 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:52 Download gff for FI19895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17987544..17987655 298..409 100 -> Plus
arm_X 17987194..17987490 1..297 100 -> Plus
arm_X 17989118..17990486 410..1778 100 -> Plus
arm_X 17990549..17990654 1779..1884 100 -> Plus
arm_X 17990724..17991446 1885..2607 100   Plus

FI19895.pep Sequence

Translation from 589 to 2070

> FI19895.pep
MQTTTSQRPVTPGTPDSAHIVIGAAGFVAHERRQPGKTLMNCFRDRSTTS
SSSSQAQHAYVRGHSVTSSTLFRLEGSGGSNCTLDKAGKQDTGRPEAVVL
LRELKTRPNKLALLKSSSSKDLTRLFLDDSTNTAVLVSNTSIDVCSSNSS
SGGSPAVGRSKSGRDRRNGLECCSSCSKRWHDLKQRMHTLEQDLLVQTTY
SQELEQKVGEMSRQLTELLQERDRERDKDKARFAAAGGVAAPGKRTAHGS
PNVRPSRLVAWMNLSNWFKSRPSVETLREQRIFFDEPCFDTELEMVLKHD
QHRTVPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTLRFSIDAN
DYDSLRQPDVDIHTLTGVLKLFLREIKSPLVRVNEAKTFIGQPNQWLLTD
LSAKLDSLKRLIRSLPESNRDTMDYIFGHFNRITKVPLQQISAETLSISV
TPSIFHTVPQGVHMQDIQQLLREGETLADCVKLMIEYQGRIFE*

FI19895.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19370-PA 534 GF19370-PA 1..505 1..493 1970 78.3 Plus
Dana\GF21287-PA 506 GF21287-PA 316..505 289..484 162 23 Plus
Dana\GF15474-PA 1817 GF15474-PA 383..553 257..435 162 27.5 Plus
Dana\GF16007-PA 828 GF16007-PA 623..820 282..493 159 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19148-PA 644 GG19148-PA 124..616 1..493 2453 95.3 Plus
Dere\GG18077-PA 238 GG18077-PA 34..229 282..492 152 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17579-PA 504 GH17579-PA 11..474 8..493 1734 69.8 Plus
Dgri\GH13043-PA 1901 GH13043-PA 399..569 257..435 155 26.9 Plus
Dgri\GH24224-PA 358 GH24224-PA 162..322 287..455 154 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP16F-PF 493 CG7122-PF 1..493 1..493 2546 100 Plus
RhoGAP16F-PD 493 CG7122-PD 1..493 1..493 2546 100 Plus
RhoGAP16F-PC 493 CG7122-PC 1..493 1..493 2546 100 Plus
RhoGAP16F-PB 493 CG7122-PB 1..493 1..493 2546 100 Plus
RhoGAP16F-PE 581 CG7122-PE 1..493 1..493 2543 99.8 Plus
RhoGAP18B-PD 752 CG42274-PD 418..743 152..492 161 24.7 Plus
RhoGAP18B-PC 1317 CG42274-PC 983..1308 152..492 161 24.7 Plus
RhoGAP18B-PH 468 CG42274-PH 185..459 186..492 159 26.5 Plus
RhoGAP18B-PF 468 CG42274-PF 185..459 186..492 159 26.5 Plus
RhoGAP18B-PB 468 CG7481-PA 185..459 186..492 159 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15177-PA 514 GI15177-PA 1..484 1..493 1821 75.1 Plus
Dmoj\GI18189-PA 1907 GI18189-PA 403..573 257..435 156 26.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14947-PA 529 GL14947-PA 1..499 1..493 1944 76.2 Plus
Dper\GL14655-PA 310 GL14655-PA 105..302 282..493 154 28.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22233-PA 546 GA22233-PA 1..497 1..493 1910 77.2 Plus
Dpse\GA22300-PA 310 GA22300-PA 105..302 282..493 155 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22879-PA 521 GM22879-PA 1..493 1..493 2601 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17385-PA 760 GD17385-PA 1..416 1..416 2201 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17057-PA 495 GJ17057-PA 1..495 1..493 1820 71.3 Plus
Dvir\GJ14675-PA 1865 GJ14675-PA 396..566 257..435 161 27.5 Plus
Dvir\GJ10933-PA 360 GJ10933-PA 145..305 305..472 158 28.7 Plus
Dvir\GJ15255-PA 1365 GJ15255-PA 1169..1356 287..492 157 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20070-PA 499 GK20070-PA 2..471 9..493 1683 67.9 Plus
Dwil\GK15216-PA 1952 GK15216-PA 399..569 257..435 158 27.5 Plus
Dwil\GK25096-PA 184 GK25096-PA 4..175 302..492 148 29.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17708-PA 520 GE17708-PA 3..492 4..493 2557 97.1 Plus
Dyak\GE15475-PA 238 GE15475-PA 34..229 282..492 158 30.3 Plus

FI19895.hyp Sequence

Translation from 589 to 2070

> FI19895.hyp
MQTTTSQRPVTPGTPDSAHIVIGAAGFVAHERRQPGKTLMNCFRDRSTTS
SSSSQAQHAYVRGHSVTSSTLFRLEGSGGSNCTLDKAGKQDTGRPEAVVL
LRELKTRPNKLALLKSSSSKDLTRLFLDDSTNTAVLVSNTSIDVCSSNSS
SGGSPAVGRSKSGRDRRNGLECCSSCSKRWHDLKQRMHTLEQDLLVQTTY
SQELEQKVGEMSRQLTELLQERDRERDKDKARFAAAGGVAAPGKRTAHGS
PNVRPSRLVAWMNLSNWFKSRPSVETLREQRIFFDEPCFDTELEMVLKHD
QHRTVPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTLRFSIDAN
DYDSLRQPDVDIHTLTGVLKLFLREIKSPLVRVNEAKTFIGQPNQWLLTD
LSAKLDSLKRLIRSLPESNRDTMDYIFGHFNRITKVPLQQISAETLSISV
TPSIFHTVPQGVHMQDIQQLLREGETLADCVKLMIEYQGRIFE*

FI19895.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP16F-PF 493 CG7122-PF 1..493 1..493 2546 100 Plus
RhoGAP16F-PD 493 CG7122-PD 1..493 1..493 2546 100 Plus
RhoGAP16F-PC 493 CG7122-PC 1..493 1..493 2546 100 Plus
RhoGAP16F-PB 493 CG7122-PB 1..493 1..493 2546 100 Plus
RhoGAP16F-PE 581 CG7122-PE 1..493 1..493 2543 99.8 Plus