Clone FI19912 Report

Search the DGRC for FI19912

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:199
Well:12
Vector:pOTB7
Associated Gene/TranscriptCG5280-RA
Protein status:FI19912.pep: gold
Sequenced Size:1035

Clone Sequence Records

FI19912.complete Sequence

1035 bp assembled on 2012-03-22

GenBank Submission: BT133339.1

> FI19912.complete
TAGCCTTCAAACACACCAAACGAAATTATCGAAGCGATTTTCTATAGTAT
ATACAAGCCTTACTTTTCCGGAGCAAAAATTATTAGCTTTACAGAATGAG
CCGACATCGCTTCAACAACGTGCAGATCAAGGCATTGCCCGGTGGTCTGA
TGGCCCACCACGAACCGGATGCGGATGGCGGACAGCCCGGTTCGCAGAAG
CTGCCCATGTGGCCCAGTGAACGCATTCCTCCTGGCGGTGCTGGAGCCTT
CCACTCGGCCAAGGTGCAATATAGCAAGGAGACAGCTGATCTGATCCGAT
TGCTTGTCAAGGAGTCCAAGATGTCGATGTTGGTACGCAAGCAGATCGAT
GAGAGCCTGCGCAATGGGGAGCCATTGCCATTGCCCGAACCGCCGCGTCC
CAATACCAACAACGATCCTGACAAGGAGACACTGGCCATTTTGGATCGGG
CACGCAATGCCAAGCGTAAGAATCTACGGCAGATCGAGGCGAGCGGAGCC
TACAAGCAGAGCTATTACCGCCCGCCCGCCGACAACCGAATGCATGGAGA
GAAGGCCAAGTCGCAGCTGCAGTTCACCATGGCCGGCACTCATTTGCCCG
ATCCGGCGATCAAGCCGCGACGTCGTCCTCGCGAAGAGCAACTGGTGACG
GAGGAGGATCTCATAAACGAGCTTTTGGACCAAATCAACGAGCGTGCCGA
GTGGTTGACGGAAATGGAGTCCATGGGCCAGGGTAAGAAGTATCGCCCAG
AGATTCGTGATCAGATTGCCGAACGTCTGCGTCGCATTCAGGCGCTGGAG
TCCAAGATGAAGATGAAGTCCAATGGCGGCTTCCGTTTCGTGGACTAAAT
GTGTTATCCTGTTTTTAAAGTTTCATGATTCCATGATTGAGACGACGAGT
AAACCAAATAAATAAATTCCAAGATTCATTTGAATTTAATGGGAATTTAT
GGTAACACTCGATTAATAAATAGCTTTATTCAACTTAAAAAAAAAAAAAA
AAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI19912.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8981472..8981843 672..301 1845 99.7 Minus
chr3L 24539361 chr3L 8981091..8981405 987..673 1560 99.7 Minus
chr3L 24539361 chr3L 8981952..8982251 300..1 1500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8989449..8989820 672..301 1800 98.9 Minus
3L 28110227 3L 8989068..8989382 987..673 1515 98.7 Minus
3L 28110227 3L 8989929..8990228 300..1 1500 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:08:31 has no hits.

FI19912.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:09:28 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8981092..8981405 673..986 99 <- Minus
chr3L 8981472..8981843 301..672 99 <- Minus
chr3L 8981952..8982251 1..300 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-22 12:56:15 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5280-RA 1..753 96..848 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:57:58 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5280-RA 1..753 96..848 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:22:35 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5280-RA 1..753 96..848 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-22 12:56:14 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5280-RA 1..986 1..986 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:57:58 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5280-RA 1..986 1..986 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:22:35 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5280-RA 1..986 1..986 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:28 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8989069..8989382 673..986 98 <- Minus
3L 8989449..8989820 301..672 98 <- Minus
3L 8989929..8990228 1..300 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:28 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8989069..8989382 673..986 98 <- Minus
3L 8989449..8989820 301..672 98 <- Minus
3L 8989929..8990228 1..300 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:28 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8989069..8989382 673..986 98 <- Minus
3L 8989449..8989820 301..672 98 <- Minus
3L 8989929..8990228 1..300 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:57:58 Download gff for FI19912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8982169..8982482 673..986 98 <- Minus
arm_3L 8982549..8982920 301..672 98 <- Minus
arm_3L 8983029..8983328 1..300 100   Minus

FI19912.hyp Sequence

Translation from 95 to 847

> FI19912.hyp
MSRHRFNNVQIKALPGGLMAHHEPDADGGQPGSQKLPMWPSERIPPGGAG
AFHSAKVQYSKETADLIRLLVKESKMSMLVRKQIDESLRNGEPLPLPEPP
RPNTNNDPDKETLAILDRARNAKRKNLRQIEASGAYKQSYYRPPADNRMH
GEKAKSQLQFTMAGTHLPDPAIKPRRRPREEQLVTEEDLINELLDQINER
AEWLTEMESMGQGKKYRPEIRDQIAERLRRIQALESKMKMKSNGGFRFVD
*

FI19912.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5280-PA 250 CG5280-PA 1..250 1..250 1305 100 Plus

FI19912.pep Sequence

Translation from 95 to 847

> FI19912.pep
MSRHRFNNVQIKALPGGLMAHHEPDADGGQPGSQKLPMWPSERIPPGGAG
AFHSAKVQYSKETADLIRLLVKESKMSMLVRKQIDESLRNGEPLPLPEPP
RPNTNNDPDKETLAILDRARNAKRKNLRQIEASGAYKQSYYRPPADNRMH
GEKAKSQLQFTMAGTHLPDPAIKPRRRPREEQLVTEEDLINELLDQINER
AEWLTEMESMGQGKKYRPEIRDQIAERLRRIQALESKMKMKSNGGFRFVD
*

FI19912.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10134-PA 250 GF10134-PA 1..250 1..250 1102 87.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15044-PA 250 GG15044-PA 1..250 1..250 1269 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14959-PA 253 GH14959-PA 1..253 1..250 943 71.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5280-PA 250 CG5280-PA 1..250 1..250 1305 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11485-PA 263 GI11485-PA 1..263 1..250 887 68.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15083-PA 251 GL15083-PA 1..251 1..250 1063 84.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18782-PA 251 GA18782-PA 1..251 1..250 1063 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24898-PA 250 GM24898-PA 1..250 1..250 1308 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12948-PA 250 GD12948-PA 1..250 1..250 1306 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13680-PA 258 GJ13680-PA 1..258 1..250 895 69.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12283-PA 254 GK12283-PA 1..254 1..250 1058 79.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21268-PA 250 GE21268-PA 1..250 1..250 1279 96.8 Plus