Clone FI20014 Report

Search the DGRC for FI20014

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:200
Well:14
Vector:pFlc-1
Associated Gene/TranscriptPino-RB
Protein status:FI20014.pep: gold
Sequenced Size:1986

Clone Sequence Records

FI20014.complete Sequence

1986 bp assembled on 2012-04-18

GenBank Submission: BT133460.1

> FI20014.complete
AGTTGCCAGCAATTTTGCAAGCAAAGTTTTGTTTTGCCTGAATTTTATCC
AAATTTAACTTAAAATTCGGTTGCGTTGGCCTAAATTTGGATACTTAACT
TCAAGCTGGTCGACTGAGCGTGCTGCTAGTATAAAGATGAAAACGGGCAG
CAACAACAACCACATCTCCGCCAGCAGCAGCAGCAGCAACAACAACAACA
ACAGCTCATTGGTGCAACAGCAGCAGCAACGCTCCACCACTTCCGTTTCC
GTCTCCTCGTCTCACATTGTCACCGAGTGGGAGGATGGCATCATTTTCGA
TGTGGACGATCCCGACTTTTGCAATCTGGCCACCGACAAGCTGAACTTCA
TAGTGCCATCAGCAGCCAATATGTCGATCGCCAGTGTTCACGGTCCCCAA
ATCGCCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGC
CTCGCTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACG
TGCTGACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGC
GGCGTCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGG
TGGCTACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTG
TCCAATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGC
TGGGTGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTT
GCCCGTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTG
CGAATCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTG
TCCACGTCGACGGCGAGCAAAAGCGGTCGCATCTAGAGCGCGGAATCCCC
GCCCAGTTCCTTCGACAGCCAGACTGCAAACACGCCTCCACATCAGCCAC
ACCCCCGCACACAGCCATTCATCCGGAAAGCAGAAGCTGAAGCAGAAGCA
GAAAGCTGGAGCGGAATTAGCTCCACCTGCACACCCAAACACACAGTCTC
TCACCCGTAATTTAGGGCCTAATTACTAAGCTTCTTAGCTGTTAGTTATT
ATTGTTGTGCAGCGTTGAGTCTTTAGTTCTTTGTTTAGCACACACAATCT
TTTGTTTTATGATTTCACCGGTATCGTTTTCGTTCCGATTCGTTGTGTGA
CAGTGCAAATATTTAGCAACTAAGTTAGTTCCTTTGTTTACCTTCCAATG
GCACCATTTGGTTTGCGCACATTACCTGTTCTATCCAGGAGAAGACTTCT
TTCTGCCTAGACTTAAGCCGAGTTTAGGCAATGCAGTGATAACGGTGATA
TTAGCCAGAAAGAATCGTGAGCAAATAGTGAATTTACATGATGTAGCAAA
TGTCTAACGATAGCTATAGATCGACATGAGATGATCATTTTTGTATAACC
CCACACGCACACACATCAAACAACCCGTGTAATCGTGTAGAGATTGTTGT
TAACAATTAGTTAGTTGTTGCTTTCTGCCTTGTGTCAAAGCTTGTTCGAA
GCGAGGAGCTCCGCGGGCACAGATCAAAGCTAGCTGCGATGGTGCCGGCG
GAGGGTTCAGTGAGCGAAGAAAGAAGAATCTTCCAGATTGCCTAATGTGC
ATAGTGCTCAACAAAGTAACTACAGGATTGAACAATTTCTCCAAGGGAAA
AGTGAAAGCGCATAGAAATGAGCAATTAAGGATGTGAAAACACGCACAAG
GAAACAATTGAAAAGCATTACTCAAAGTTGAAGATTTTCTGTGAAAATCC
ATATGACATGTAGAAGTTTATACCTAATATATACACCTATATATTATATA
CCACATAAATCTGCATACAATATACATAAATATATATATATTTTTAATGT
AGAGATATGTTTTGTAAAAGACAAAGGCATATTTTTAAAATTAAATACCT
AAACTATGCAAAAATCAAAACAAAAAAAAAAAAAAA

FI20014.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1114504..1115798 1968..676 6305 99.3 Minus
chr2L 23010047 chr2L 1116293..1116542 676..427 1250 100 Minus
chr2L 23010047 chr2L 1128001..1128219 353..135 1095 100 Minus
chr2L 23010047 chr2L 1128672..1128811 140..1 625 96.4 Minus
chr2L 23010047 chr2L 1117297..1117372 427..352 380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1114652..1115944 1968..676 6465 100 Minus
2L 23513712 2L 1116441..1116690 676..427 1250 100 Minus
2L 23513712 2L 1128129..1128347 353..135 1095 100 Minus
2L 23513712 2L 1128800..1128939 140..1 685 99.3 Minus
2L 23513712 2L 1117443..1117518 427..352 380 100 Minus
Blast to na_te.dros performed 2019-03-15 13:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 833..1073 1737..1970 151 56.7 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 483..663 1732..1919 131 58.5 Plus
412 7567 412 412 7567bp 1812..1869 1908..1847 119 72.6 Minus
TAHRE 10463 TAHRE OSV 10463bp 9369..9424 1204..1147 114 69 Minus

FI20014.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:19 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1114501..1114582 1890..1971 97 == Minus
chr2L 1114656..1115797 677..1818 99 <- Minus
chr2L 1116293..1116542 427..676 100 <- Minus
chr2L 1117298..1117370 354..426 100 <- Minus
chr2L 1128001..1128124 230..353 100 == Minus
chr2L 1128676..1128811 1..136 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-18 17:41:13 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 1..750 137..886 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:15:22 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 1..750 137..886 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:43:23 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 1..750 137..886 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 17:41:13 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 15..1982 1..1968 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:15:22 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 15..1980 1..1966 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:43:23 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 15..1980 1..1966 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:19 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1114649..1115943 677..1971 99 <- Minus
2L 1116441..1116690 427..676 100 <- Minus
2L 1117444..1117516 354..426 100 <- Minus
2L 1128129..1128345 137..353 100 <- Minus
2L 1128804..1128939 1..136 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:19 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1114649..1115943 677..1971 99 <- Minus
2L 1116441..1116690 427..676 100 <- Minus
2L 1117444..1117516 354..426 100 <- Minus
2L 1128129..1128345 137..353 100 <- Minus
2L 1128804..1128939 1..136 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:19 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1114649..1115943 677..1971 99 <- Minus
2L 1116441..1116690 427..676 100 <- Minus
2L 1117444..1117516 354..426 100 <- Minus
2L 1128129..1128345 137..353 100 <- Minus
2L 1128804..1128939 1..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:15:22 Download gff for FI20014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1117444..1117516 354..426 100 <- Minus
arm_2L 1116441..1116690 427..676 100 <- Minus
arm_2L 1114649..1115943 677..1971 99 <- Minus
arm_2L 1128129..1128345 137..353 100 <- Minus
arm_2L 1128804..1128939 1..136 100   Minus

FI20014.pep Sequence

Translation from 136 to 885

> FI20014.pep
MKTGSNNNHISASSSSSNNNNNSSLVQQQQQRSTTSVSVSSSHIVTEWED
GIIFDVDDPDFCNLATDKLNFIVPSAANMSIASVHGPQIADICSPLSHHN
LGLSASLPDLVGSPLEISMDNVLTIEELRQHMGSCFTCGVSWTDDHVSLD
CSECGGYSLERPCPLCDGQCGVQWKRDFAMSHACSQARWVGVCISYPEVV
AGVQLPVGAGAGAATSCAAAAANQLRLAQELCSRLEQLSTSTASKSGRI*

FI20014.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14736-PA 204 GF14736-PA 33..112 19..97 311 77.5 Plus
Dana\GF14736-PA 204 GF14736-PA 135..204 180..249 267 92.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24613-PA 249 GG24613-PA 1..249 1..249 1260 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10567-PA 169 GH10567-PA 1..169 79..249 709 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-PB 249 CG4710-PB 1..249 1..249 1309 100 Plus
Pino-PC 171 CG4710-PC 1..171 79..249 911 100 Plus
Pino-PA 171 CG4710-PA 1..171 79..249 911 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21963-PA 261 GI21963-PA 8..258 3..249 843 69.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15076-PA 256 GL15076-PA 1..255 1..248 973 77.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25452-PA 169 GA25452-PA 1..168 79..248 846 94.1 Plus
Dpse\GA25446-PA 108 GA25446-PA 41..107 22..96 154 50 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16627-PA 246 GM16627-PA 1..246 1..249 1254 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22927-PA 248 GD22927-PA 1..248 1..249 1259 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17830-PA 269 GJ17830-PA 47..266 39..249 823 73.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24368-PA 230 GK24368-PA 2..230 29..249 895 79.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15777-PA 251 GE15777-PA 1..251 1..249 1272 97.6 Plus

FI20014.hyp Sequence

Translation from 136 to 885

> FI20014.hyp
MKTGSNNNHISASSSSSNNNNNSSLVQQQQQRSTTSVSVSSSHIVTEWED
GIIFDVDDPDFCNLATDKLNFIVPSAANMSIASVHGPQIADICSPLSHHN
LGLSASLPDLVGSPLEISMDNVLTIEELRQHMGSCFTCGVSWTDDHVSLD
CSECGGYSLERPCPLCDGQCGVQWKRDFAMSHACSQARWVGVCISYPEVV
AGVQLPVGAGAGAATSCAAAAANQLRLAQELCSRLEQLSTSTASKSGRI*

FI20014.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-PB 249 CG4710-PB 1..249 1..249 1309 100 Plus
Pino-PC 171 CG4710-PC 1..171 79..249 911 100 Plus
Pino-PA 171 CG4710-PA 1..171 79..249 911 100 Plus