Clone FI20018 Report

Search the DGRC for FI20018

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:200
Well:18
Vector:pFlc-1
Associated Gene/TranscriptCG13650-RB
Protein status:FI20018.pep: gold
Sequenced Size:2711

Clone Sequence Records

FI20018.complete Sequence

2711 bp assembled on 2012-04-06

GenBank Submission: BT133362.1

> FI20018.complete
GATATCCTTTTTCGGCAGAAAAGTGATTATATTGTTAAGTTAATTTAATC
GGATAAAGATATATACACTTGATTTTTAAGCTGCATATGTAGGTGCGTCA
ATTATTTGATCGAGTGTATAGCTCATAAGTCCTGTATATAGATCTCTGGA
GGCAAATGTGCGTGCTTATCACAAGTCCCCGACCAACCGCAGTACAAATT
TATGTAAATGCGTGAAAACTTATGCCCATCAACGGAATCAGCAGAACGTA
ATAACATTTTCAGAGTCAAAACCAAACAATGACAGCTGATTCCAGTGCAC
GTAATGTTTTTCGAAAGAACGGCGTTGCCGGCTTGGGCAACAACGGTCAT
GGCCGGAATCTTATTACGACCGCCAATCCATCCGGAGGAAGTAGCGCCTC
GCTGCTACAAAAGCAGTTGTCCTTCAAAACGCCCGTTGGCTCCAAGCAGA
TGGGCAAATCCGATGAGATCGAAATGATCGACAGTGCTAACATCGAAAAC
TTCAATACTCGATATAATAAGAACAGCATTATAGGATGGATATGCTGTGC
CCCGTGCATTTGGCTGCGCACCTCGGCGGCAGTGCACAAAATGGCCATCA
CATCAGCCACCCTGTTGGTGACCACATTGCTGGTAGCATCGCCCATATTA
TTTTTGATAAGCACGGCACCCTCACCTCTGCCAAGAGATTGCTACATGGA
CGGGGATCGGTGCTCGCCGGCCGTTTCAGCACCGCCGGAATGCTCGGATC
CCATTTGCGAGGCGGTGGCCTCCAGCATCCAGGCCAGACTCAATTGGAAC
AAGGATCCGTGCACGGAGTTCAAGAAGTTCAGCTGTTGGCGCAACACGCC
CAATAAAAATATAACGAACCTCATTGAAATGGGAAACTCACAGAAAAGCG
TCGATTCACAAATGCTGTATCTATTCCAGAACAAGATTATGAACGGCAGC
TTTGGTATATTGCACAATTTGTTTGAAAGCTGCTTGCAGCAGACAACTAA
CTCAACTGTCATGCACAGGATATTTGATTCCCTAGGCGGTTATCTGCCTG
TTGGTTCGGTGGGACCATCGAGTATAGCACCCTTAATAGCCAAGATCTAT
GATCTCGGCCCCAGTCCGTTGGTAGACCTATATCACGACCTTAGCTACGG
AAGGCGACCGCACATTCTACTTATTATTAGTGGACCCAGCACTTCGTCAA
CTATCCTCGAGCGAAAAATACGTTGGATGAGTCCAAAAGCCCCGCCTAGT
CGTATTCGACAAGGGGTACCGAAGTTGTTAGCCGATTTAATCGAGAATTT
CCTACCTTACTTCGTGTCATATGCTCAAAGAGTTTCCGAGAAGGATACTA
TTTTTGAATTTATAAAGGACCTAAACAAGCTGCAAGTTGAACACTCTCGT
CGAGGATTCTGGGACAGCACTGTTTTATATAATGTATCCAGTCTACAAGA
CTTGTACCCAGTTTTAAATTGGACATTGCTTATACCGCAGAACTGGAGCG
GACCCATCGTTGTTAGGAATAGTGATTATCTGAAAGCCTTAGAATACTTT
CTCACCAAGTACCCAACTAGAGTTGCACACAATTCGCTATTATTGTTAAG
TGCTTTACAAATATTGCCACGTGATTATCCGAGCCCCGAAGTTTGCACCC
GATCCACCATGTGGGCATTGCCCGAATTATCATCTTCCCTATATATTGCT
CAACATTCATCTGAAGACCTAAAGGACACCACAAAACGAGCTGAGATCAT
ATTTAAGTCATTAAAAGCGCACTTGAAGAGAGCGCCGTCTTTAAAAGGAG
CTGCCCTAGTGAAACTATCGGCTTTGAAGATCCAATCGCAGACCTGGGAG
GGATTCTCAAACACAACGGACTTGTTGAAGAGTCTCCAACCTCTGAATAT
TACGTCCGAATGCTGGTTTCAAAACATTTTGGAGATATACAAAAAGAACA
AACTGGAGCCGAATGATATCAGTTTGAACGGCGGCTCCCATGATGCTTGG
GCATATCCCATAGTGTCGACCATTTTTTATGATACGCTGAGCCATTCAAT
CGTTGTCCCATTATCCGTCATACTCATACCATACTTTAATGCTGTATTGC
CGCCATATCTGCACTATGCTTCTGTTGGTGTTTCCATTGCCAAAGAGATT
TTGCGTTCCATCACAAAATCGTTCGACGAAAAGGCAATGCGTTGTGTGCC
GCATTCTGTAAATATATTCTCGAACTACAGCCGCATGGATATACTGATTC
ATTCGGGAGGAATGCAGATATCATACCACTCAATGCTTTCCCTAACCGGT
CCCATCAAGGGAATGGCCAGACTACCTGGTCTGAATCTAACGCCGACGCA
AATCTTCTTTTTAGTTTCCGCCCAGGAACTGTGTGCTGAATCGAACTACT
TGGGCATCGATACAAACGCTCCCGAATTCGATAATATATTGGGTTGGCTC
GTTGCCCAGGGCGGGAGTGCGACTGAAGTTTTCAAATGTCCATCGGGATC
CATGATCAATGTACAGAAGACCTGCAATGTGCTTTAAATATTATTTCGAC
GTCAACTTGGACTATCTACTTTGTCTACGATCCCAATTGAGTTTAAAATT
AGTAGCTCTAGTGACTTACCTACTAGTATTGTTTTCTATTTTAAATGTAA
AATGTATATTTTAAATAAATATACTGTTAATAAAAAAAAAAACAAAAAAA
AAAAAAAAAAA

FI20018.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20934614..20935012 918..520 1980 99.7 Minus
chr3R 27901430 chr3R 20932678..20933063 2437..2052 1900 99.5 Minus
chr3R 27901430 chr3R 20935078..20935437 521..162 1785 99.7 Minus
chr3R 27901430 chr3R 20934259..20934551 1211..919 1465 100 Minus
chr3R 27901430 chr3R 20933559..20933835 1740..1464 1370 99.6 Minus
chr3R 27901430 chr3R 20933248..20933504 1996..1740 1270 99.6 Minus
chr3R 27901430 chr3R 20932373..20932619 2684..2438 1205 99.2 Minus
chr3R 27901430 chr3R 20934040..20934209 1379..1210 835 99.4 Minus
chr3R 27901430 chr3R 20935506..20935663 162..5 760 98.7 Minus
chr3R 27901430 chr3R 20933889..20933978 1467..1378 420 97.8 Minus
chr3R 27901430 chr3R 20933130..20933185 2052..1997 280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25111464..25111862 918..520 1995 100 Minus
3R 32079331 3R 25109528..25109913 2437..2052 1930 100 Minus
3R 32079331 3R 25111928..25112287 521..162 1800 100 Minus
3R 32079331 3R 25111109..25111401 1211..919 1465 100 Minus
3R 32079331 3R 25110409..25110685 1740..1464 1385 100 Minus
3R 32079331 3R 25110098..25110354 1996..1740 1285 100 Minus
3R 32079331 3R 25109223..25109469 2684..2438 1235 100 Minus
3R 32079331 3R 25110890..25111059 1379..1210 850 100 Minus
3R 32079331 3R 25112356..25112513 162..5 790 100 Minus
3R 32079331 3R 25110739..25110828 1467..1378 435 98.9 Minus
3R 32079331 3R 25109980..25110035 2052..1997 280 100 Minus
Blast to na_te.dros performed 2019-03-15 13:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6913..7022 2691..2585 156 63.1 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 1287..1348 2684..2627 129 72.6 Minus

FI20018.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:32:44 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20932427..20932619 2438..2630 98 <- Minus
chr3R 20932678..20933062 2053..2437 99 <- Minus
chr3R 20933130..20933185 1997..2052 100 <- Minus
chr3R 20933248..20933504 1740..1996 99 <- Minus
chr3R 20933560..20933835 1464..1739 99 <- Minus
chr3R 20933893..20933976 1380..1463 98 <- Minus
chr3R 20934040..20934207 1212..1379 99 <- Minus
chr3R 20934259..20934551 919..1211 100 <- Minus
chr3R 20934614..20935010 522..918 99 <- Minus
chr3R 20935078..20935436 163..521 99 <- Minus
chr3R 20935506..20935666 1..162 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-06 12:50:52 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13650-RB 1..2259 279..2537 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:02:42 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13650-RB 1..2259 279..2537 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:31:41 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13650-RB 1..2259 279..2537 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 12:50:52 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13650-RB 1..2680 2..2681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:02:42 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13650-RB 1..2680 2..2681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:31:41 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
CG13650-RB 1..2680 2..2681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:44 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25109226..25109469 2438..2681 100 <- Minus
3R 25109528..25109912 2053..2437 100 <- Minus
3R 25109980..25110035 1997..2052 100 <- Minus
3R 25110098..25110354 1740..1996 100 <- Minus
3R 25110410..25110685 1464..1739 100 <- Minus
3R 25110743..25110826 1380..1463 100 <- Minus
3R 25110890..25111057 1212..1379 100 <- Minus
3R 25111109..25111401 919..1211 100 <- Minus
3R 25111464..25111860 522..918 100 <- Minus
3R 25111928..25112286 163..521 100 <- Minus
3R 25112356..25112516 1..162 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:44 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25109226..25109469 2438..2681 100 <- Minus
3R 25109528..25109912 2053..2437 100 <- Minus
3R 25109980..25110035 1997..2052 100 <- Minus
3R 25110098..25110354 1740..1996 100 <- Minus
3R 25110410..25110685 1464..1739 100 <- Minus
3R 25110743..25110826 1380..1463 100 <- Minus
3R 25110890..25111057 1212..1379 100 <- Minus
3R 25111109..25111401 919..1211 100 <- Minus
3R 25111464..25111860 522..918 100 <- Minus
3R 25111928..25112286 163..521 100 <- Minus
3R 25112356..25112516 1..162 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:44 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25109226..25109469 2438..2681 100 <- Minus
3R 25109528..25109912 2053..2437 100 <- Minus
3R 25109980..25110035 1997..2052 100 <- Minus
3R 25110098..25110354 1740..1996 100 <- Minus
3R 25110410..25110685 1464..1739 100 <- Minus
3R 25110743..25110826 1380..1463 100 <- Minus
3R 25110890..25111057 1212..1379 100 <- Minus
3R 25111109..25111401 919..1211 100 <- Minus
3R 25111464..25111860 522..918 100 <- Minus
3R 25111928..25112286 163..521 100 <- Minus
3R 25112356..25112516 1..162 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:42 Download gff for FI20018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20936612..20936779 1212..1379 100 <- Minus
arm_3R 20934948..20935191 2438..2681 100 <- Minus
arm_3R 20935250..20935634 2053..2437 100 <- Minus
arm_3R 20935702..20935757 1997..2052 100 <- Minus
arm_3R 20935820..20936076 1740..1996 100 <- Minus
arm_3R 20936132..20936407 1464..1739 100 <- Minus
arm_3R 20936465..20936548 1380..1463 100 <- Minus
arm_3R 20936831..20937123 919..1211 100 <- Minus
arm_3R 20937186..20937582 522..918 100 <- Minus
arm_3R 20937650..20938008 163..521 100 <- Minus
arm_3R 20938078..20938238 1..162 98   Minus

FI20018.hyp Sequence

Translation from 278 to 2536

> FI20018.hyp
MTADSSARNVFRKNGVAGLGNNGHGRNLITTANPSGGSSASLLQKQLSFK
TPVGSKQMGKSDEIEMIDSANIENFNTRYNKNSIIGWICCAPCIWLRTSA
AVHKMAITSATLLVTTLLVASPILFLISTAPSPLPRDCYMDGDRCSPAVS
APPECSDPICEAVASSIQARLNWNKDPCTEFKKFSCWRNTPNKNITNLIE
MGNSQKSVDSQMLYLFQNKIMNGSFGILHNLFESCLQQTTNSTVMHRIFD
SLGGYLPVGSVGPSSIAPLIAKIYDLGPSPLVDLYHDLSYGRRPHILLII
SGPSTSSTILERKIRWMSPKAPPSRIRQGVPKLLADLIENFLPYFVSYAQ
RVSEKDTIFEFIKDLNKLQVEHSRRGFWDSTVLYNVSSLQDLYPVLNWTL
LIPQNWSGPIVVRNSDYLKALEYFLTKYPTRVAHNSLLLLSALQILPRDY
PSPEVCTRSTMWALPELSSSLYIAQHSSEDLKDTTKRAEIIFKSLKAHLK
RAPSLKGAALVKLSALKIQSQTWEGFSNTTDLLKSLQPLNITSECWFQNI
LEIYKKNKLEPNDISLNGGSHDAWAYPIVSTIFYDTLSHSIVVPLSVILI
PYFNAVLPPYLHYASVGVSIAKEILRSITKSFDEKAMRCVPHSVNIFSNY
SRMDILIHSGGMQISYHSMLSLTGPIKGMARLPGLNLTPTQIFFLVSAQE
LCAESNYLGIDTNAPEFDNILGWLVAQGGSATEVFKCPSGSMINVQKTCN
VL*

FI20018.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13650-PB 752 CG13650-PB 1..752 1..752 3919 100 Plus

FI20018.pep Sequence

Translation from 278 to 2536

> FI20018.pep
MTADSSARNVFRKNGVAGLGNNGHGRNLITTANPSGGSSASLLQKQLSFK
TPVGSKQMGKSDEIEMIDSANIENFNTRYNKNSIIGWICCAPCIWLRTSA
AVHKMAITSATLLVTTLLVASPILFLISTAPSPLPRDCYMDGDRCSPAVS
APPECSDPICEAVASSIQARLNWNKDPCTEFKKFSCWRNTPNKNITNLIE
MGNSQKSVDSQMLYLFQNKIMNGSFGILHNLFESCLQQTTNSTVMHRIFD
SLGGYLPVGSVGPSSIAPLIAKIYDLGPSPLVDLYHDLSYGRRPHILLII
SGPSTSSTILERKIRWMSPKAPPSRIRQGVPKLLADLIENFLPYFVSYAQ
RVSEKDTIFEFIKDLNKLQVEHSRRGFWDSTVLYNVSSLQDLYPVLNWTL
LIPQNWSGPIVVRNSDYLKALEYFLTKYPTRVAHNSLLLLSALQILPRDY
PSPEVCTRSTMWALPELSSSLYIAQHSSEDLKDTTKRAEIIFKSLKAHLK
RAPSLKGAALVKLSALKIQSQTWEGFSNTTDLLKSLQPLNITSECWFQNI
LEIYKKNKLEPNDISLNGGSHDAWAYPIVSTIFYDTLSHSIVVPLSVILI
PYFNAVLPPYLHYASVGVSIAKEILRSITKSFDEKAMRCVPHSVNIFSNY
SRMDILIHSGGMQISYHSMLSLTGPIKGMARLPGLNLTPTQIFFLVSAQE
LCAESNYLGIDTNAPEFDNILGWLVAQGGSATEVFKCPSGSMINVQKTCN
VL*

FI20018.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17101-PA 752 GF17101-PA 1..752 1..752 3807 95.6 Plus
Dana\GF16131-PA 709 GF16131-PA 305..708 404..751 173 21.8 Plus
Dana\GF20227-PA 794 GF20227-PA 538..793 531..751 170 24.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12288-PA 660 GG12288-PA 1..660 1..752 3128 82.2 Plus
Dere\GG19262-PA 790 GG19262-PA 534..789 531..751 164 25 Plus
Dere\GG15258-PA 1038 GG15258-PA 716..1037 470..751 158 23.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18046-PA 571 GH18046-PA 1..320 1..325 1280 73.8 Plus
Dgri\GH18046-PA 571 GH18046-PA 306..571 487..752 1257 86.8 Plus
Dgri\GH24626-PA 787 GH24626-PA 528..786 528..751 184 26.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Nepl16-PB 752 CG13650-PB 1..752 1..752 3919 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23825-PA 574 GI23825-PA 1..323 1..325 1257 72.3 Plus
Dmoj\GI23825-PA 574 GI23825-PA 309..574 487..752 1245 87.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21940-PA 575 GL21940-PA 1..324 1..325 1487 86.2 Plus
Dper\GL21940-PA 575 GL21940-PA 307..575 484..752 1310 91.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12436-PA 575 GA12436-PA 1..324 1..325 1484 85.8 Plus
Dpse\GA12436-PA 575 GA12436-PA 307..575 484..752 1305 90.7 Plus
Dpse\GA21880-PA 785 GA21880-PA 529..784 531..751 174 26.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17751-PA 752 GM17751-PA 1..752 1..752 3993 99.3 Plus
Dsec\GM23001-PA 759 GM23001-PA 503..758 531..751 158 24.6 Plus
Dsec\GM23172-PA 1040 GM23172-PA 711..1039 463..751 156 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18235-PA 576 GD18235-PA 1..321 1..321 1669 97.5 Plus
Dsim\GD18235-PA 576 GD18235-PA 308..576 484..752 1397 98.1 Plus
Dsim\GD20045-PA 1040 GD20045-PA 711..1039 463..751 155 23.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23597-PA 630 GJ23597-PA 1..368 1..370 1520 74.1 Plus
Dvir\GJ23597-PA 630 GJ23597-PA 340..630 467..752 1256 82.5 Plus
Dvir\GJ23291-PA 797 GJ23291-PA 349..796 379..751 192 22.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13886-PA 751 GK13886-PA 1..751 1..752 3546 86.3 Plus
Dwil\GK16267-PA 785 GK16267-PA 526..784 528..751 188 25.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10740-PA 576 GE10740-PA 1..325 1..325 1660 96 Plus
Dyak\GE10740-PA 576 GE10740-PA 308..576 484..752 1392 98.1 Plus
Dyak\GE15881-PA 786 GE15881-PA 530..785 531..751 163 25 Plus