Clone FI20019 Report

Search the DGRC for FI20019

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:200
Well:19
Vector:pFlc-1
Associated Gene/TranscriptFim-RC
Protein status:FI20019.pep: gold
Sequenced Size:3282

Clone Sequence Records

FI20019.complete Sequence

3282 bp assembled on 2012-04-18

GenBank Submission: BT133476.1

> FI20019.complete
GATCTCTTATCTCCCGCTCTTCGCACAGTGGAGAGTCGTTATCAAGAGTT
TTTTTTTATGCGTGCGCTGGCTGGACACTGTGCAAATTTCTACAGAAATA
TTTACTACACTCAAAGTTGCGAGTAATCGCAGACAAGCGAAGACTCAAAA
TTTACTCTACGTGTTACAAATTTCAATTGACTGCGACAAAGTCGAAAAAA
AAAGTATTAAAAAGTTGAATGCGAACAACGACCGGCAAACAACCAGAAAA
ACAGCAGCAGATACAAAAAAAAAACCACAACAACGCCAAGAGAAACGAAA
AGTAACGCACTGACACCGATTGACACGCCAGGCGACAAAAGTTTTGAACA
GTGTTGCTTATTTGGGAAAGAAGCATTCGAAGTATATTCGAACTTTGATG
CAGCTTGATTTGCAATCTTCAGTAATCGGTAGTGATCGTAAAATGGGATA
TGTTGGATGCCAACAAAGATGGCTTCATCGATCTGCACGAGCTAAAGGAT
GCCCTCAACCAGGTGGGCTTCAAGCTGGCCGGCTACCAGGTGCGCGAAAT
GATTGACGAGTACAAGGGCAAACAGCTGACTGCCTTCCAGGGCAAATTGA
ATCTGGAGGAGTTCGAGGCACTGTGCCTGGACCTGAAGAGCAAGGATGTG
GCCAGCACATTCAAGACGGTCGTCTCCAAGAAGGAGAACTTGGAGACCCT
GGGCGGCATGTCGAGCATTTCGTCGGAGGGCACCACCCATTCGGTGCGCC
TCGAGGAGCAGCTGGCCTTCTCCGACTGGATTAACTCGAATCTGGGCCAC
GACAAGGATCTGCAACATCTGCTGCCCATCGATAGCGAGGGCAAGCGCTT
GTATCTGAGCATCAAGGATGGTATTCTGCTGTGCAAAATTATCAACCACT
CCTGCCCGGACACAATCGATGAGCGTGCGATCAACAAGAAGAACCTCACC
GTCTACCGGGAGTTTGAGAACTTGACCCTGGCCTTGGTTTCCTCCCAGGC
GATTGGATGCAACATCGTAAACATCGATGCCCACGATCTGGCCAAGGGCA
AGCCACATCTGGTGCTGGGTCTTCTCTGGCAGATCATCCGCATCGGTCTG
TTTAGCCACATCACCCTGGACAGCTGTCCGGGATTGGCTGGCCTACTCTT
CGACAACGAACGTCTCGAGGATCTGATGAAGATGTCGCCGGAGGCCATCC
TTTTGCGTTGGGTCAACCATCATTTGGAGCGAGCCGGCATCTCGAGGCGG
TGCACCAACTTCCAGTCGGACATCGTCGATTCTGAGATCTATTCGCATTT
GCTGAAGCAAATTGCCGGCAATGATGCTGATGTCAATCTGGATGCCCTGC
GGGAATCCGATCTGCAGTCGCGCGCGGAGATCATGTTGCAGCAGGCCGCC
AAGCTCAACTGCCGCAGCTTCCTCACGCCACAGGATGTCGTCAACGGAGT
CTACAAACTCAATCTAGCCTTCGTGGCTAATCTGTTCAACAACCATCCAG
GATTGGACAAGCCCGAGCAGATCGAGGGACTCGAGTCCATTGAGGAGACG
CGCGAAGAGAAGACCTACCGCAATTGGATGAACTCAATGGGCGTGGCACC
GCACGTGAACTGGCTTTACTCCGATTTGGCCGATGGTCTGGTCATTTTCC
AGCTGTTCGACGTCATCAAGCCGGGTATTGTCAACTGGAGCCGTGTGCAC
AAGCGTTTCAGCCCGCTGCGCAAGTTCATGGAAAAGCTGGAGAACTGCAA
CTATGCGGTGGATCTGGGCAAGCAGCTCAAATTCTCGCTGGTCGGAATCG
CAGGCCAGGATCTAAACGATGGCAATGCCACGCTGACGTTGGCTCTCATC
TGGCAGCTTATGCGTGCCTACACCCTGTCCATTCTGTCCCGCTTGGCCAA
CACTGGCAACCCCATTATCGAGAAGGAGATCGTCCAGTGGGTGAATAACC
GACTGTCGGAGGCAGGCAAACAGTCGCAGCTGCGTAACTTCAACGATCCG
GCCATCGCCGATGGCAAGATCGTGATCGATCTGATCGATGCCATCAAGGA
GGGCAGCATTAACTACGAGTTGGTGCGCACTAGCGGAACACAGGAGGATA
ACCTGGCCAATGCCAAGTATGCCATCTCCATGGCCCGCAAGATCGGCGCC
CGTGTCTACGCCCTGCCCGAGGACATCACCGAGGTGAAGCCGAAAATGGT
GATGACCGTTTTCGCCTGCATGATGGCCCTCGACTACGTGCCCAACATGG
ACAGTGTGGACCAGAACAACCACAACAGCTCCGCCAACAACAGCAATTAG
GCGCCATAGCCACAACTCATTTATACATAAACAAAAGGATGGGATTTTGA
AAGGGAAGAACAGAGTGGGAACTACGTAAATTTGTCGTATTCGCTAATTA
CTAATAACTCTATTCGATTGCGTTCCTTCCTGCGCTACCAATACATTTTT
GTGTTTTTTTTTTATTTCAATTACTTTCTGTAATTTTTTTATTATATATT
TATATATTATATAATTGAGTATGAGTTTCCCCCTATTGTAATTAAGCAAA
CAGATTTTAGATTGTCGCACATCTGTTTTCGAGCCCGGCGGGGTGTTTCT
TAATTAGTTTTGTTTAACAATTGATTAATTATACAACTGTAACCTTATTT
TATAAATAAAGGTTTAGCTTGTTCCGCTTAAAATCCTTAAAAGAAAAGAA
TGGTGAAACAAAAGAAAGAAAAAAAAAGCGACTTGTGCAGGATTAAGAAA
GAATTATAATATTAACATTGCGACGAAAACAATTAACTCTGTAATATATA
TACATATATATTTATATACGATTACGATATGCGTCTATATACATAACATA
TAAATTTACATAAATCGATATATTTTTCCATAAACGCGTTGCCTAAAGAA
AGATAACGAACGAAGATCAGGAATGGGGAATATTCAGAAACAAAAGAAGT
CGAGAAAAACAGAGAAACTAATTTTATATTTACTATAAATTTTTTTGCGA
GTAATTGTAAGACGCCTTTGTTTATGTGTTTTTTTTTCAACGTGCGTGTT
TGTTCAATTTCTTTTTACATATTTGTATAATTTTGCGTTTAAGTGCGTTA
GAGCGAGGTGGCAATAGGTATCGCCAACACGGCGTAGAAAGAGAGGGCAA
CAAACATTTTTAGTGCAATGAGGCGACATACAAATCCAAGAGAAAAAACG
AATTAAGAAGATGAAGTAATATTATATGCAGAATAAAAGTAAAACAATAA
AGAAAATAAAAATACCAAAAAAAAAAAAAAAA

FI20019.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17175152..17176326 3266..2095 5625 99.1 Minus
chrX 22417052 chrX 17177376..17178487 1563..452 5560 100 Minus
chrX 22417052 chrX 17184502..17184905 452..49 2020 100 Minus
chrX 22417052 chrX 17176704..17176982 1842..1564 1350 98.9 Minus
chrX 22417052 chrX 17176384..17176639 2097..1842 1265 99.6 Minus
chrX 22417052 chrX 17190023..17190070 49..2 240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17285695..17286878 3275..2095 5780 99.4 Minus
X 23542271 X 17287927..17289038 1563..452 5560 100 Minus
X 23542271 X 17295053..17295456 452..49 2020 100 Minus
X 23542271 X 17287256..17287534 1842..1564 1395 100 Minus
X 23542271 X 17286936..17287191 2097..1842 1280 100 Minus
X 23542271 X 17300574..17300621 49..2 240 100 Minus
Blast to na_te.dros performed 2019-03-15 13:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1013..1213 2688..2877 133 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6834 224..309 129 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2599..2666 2265..2334 128 68.6 Plus
transib1 2167 transib1 TRANSIB1 2167bp 308..378 2967..3039 125 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6795 224..291 120 69.6 Plus

FI20019.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:22 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17175152..17176324 2097..3266 99 <- Minus
chrX 17176385..17176638 1843..2096 99 <- Minus
chrX 17176704..17176982 1564..1842 98 <- Minus
chrX 17177376..17178486 453..1563 100 <- Minus
chrX 17184502..17184907 48..452 99 <- Minus
chrX 17190025..17190070 1..47 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-18 17:41:14 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RC 1..1851 450..2300 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:15:28 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RC 1..1851 450..2300 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:43:32 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RC 1..1851 450..2300 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 17:41:14 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RC 1..3269 2..3266 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:15:28 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RC 1..3269 2..3266 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:43:32 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RC 1..3269 2..3266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:22 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
X 17295053..17295458 48..452 99 <- Minus
X 17300576..17300621 1..47 97   Minus
X 17285704..17286876 2097..3266 99 <- Minus
X 17286937..17287190 1843..2096 100 <- Minus
X 17287256..17287534 1564..1842 100 <- Minus
X 17287927..17289037 453..1563 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:22 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
X 17295053..17295458 48..452 99 <- Minus
X 17300576..17300621 1..47 97   Minus
X 17285704..17286876 2097..3266 99 <- Minus
X 17286937..17287190 1843..2096 100 <- Minus
X 17287256..17287534 1564..1842 100 <- Minus
X 17287927..17289037 453..1563 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:22 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
X 17295053..17295458 48..452 99 <- Minus
X 17300576..17300621 1..47 97   Minus
X 17285704..17286876 2097..3266 99 <- Minus
X 17286937..17287190 1843..2096 100 <- Minus
X 17287256..17287534 1564..1842 100 <- Minus
X 17287927..17289037 453..1563 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:15:28 Download gff for FI20019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17179737..17180909 2097..3266 99 <- Minus
arm_X 17180970..17181223 1843..2096 100 <- Minus
arm_X 17181289..17181567 1564..1842 100 <- Minus
arm_X 17181960..17183070 453..1563 100 <- Minus
arm_X 17189086..17189491 48..452 99 <- Minus
arm_X 17194609..17194654 1..47 97   Minus

FI20019.hyp Sequence

Translation from 449 to 2299

> FI20019.hyp
MLDANKDGFIDLHELKDALNQVGFKLAGYQVREMIDEYKGKQLTAFQGKL
NLEEFEALCLDLKSKDVASTFKTVVSKKENLETLGGMSSISSEGTTHSVR
LEEQLAFSDWINSNLGHDKDLQHLLPIDSEGKRLYLSIKDGILLCKIINH
SCPDTIDERAINKKNLTVYREFENLTLALVSSQAIGCNIVNIDAHDLAKG
KPHLVLGLLWQIIRIGLFSHITLDSCPGLAGLLFDNERLEDLMKMSPEAI
LLRWVNHHLERAGISRRCTNFQSDIVDSEIYSHLLKQIAGNDADVNLDAL
RESDLQSRAEIMLQQAAKLNCRSFLTPQDVVNGVYKLNLAFVANLFNNHP
GLDKPEQIEGLESIEETREEKTYRNWMNSMGVAPHVNWLYSDLADGLVIF
QLFDVIKPGIVNWSRVHKRFSPLRKFMEKLENCNYAVDLGKQLKFSLVGI
AGQDLNDGNATLTLALIWQLMRAYTLSILSRLANTGNPIIEKEIVQWVNN
RLSEAGKQSQLRNFNDPAIADGKIVIDLIDAIKEGSINYELVRTSGTQED
NLANAKYAISMARKIGARVYALPEDITEVKPKMVMTVFACMMALDYVPNM
DSVDQNNHNSSANNSN*

FI20019.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-PC 616 CG8649-PC 1..616 1..616 3169 100 Plus
Fim-PD 641 CG8649-PD 27..641 2..616 3164 100 Plus
Fim-PA 640 CG8649-PA 26..640 2..616 3164 100 Plus

FI20019.pep Sequence

Translation from 449 to 2299

> FI20019.pep
MLDANKDGFIDLHELKDALNQVGFKLAGYQVREMIDEYKGKQLTAFQGKL
NLEEFEALCLDLKSKDVASTFKTVVSKKENLETLGGMSSISSEGTTHSVR
LEEQLAFSDWINSNLGHDKDLQHLLPIDSEGKRLYLSIKDGILLCKIINH
SCPDTIDERAINKKNLTVYREFENLTLALVSSQAIGCNIVNIDAHDLAKG
KPHLVLGLLWQIIRIGLFSHITLDSCPGLAGLLFDNERLEDLMKMSPEAI
LLRWVNHHLERAGISRRCTNFQSDIVDSEIYSHLLKQIAGNDADVNLDAL
RESDLQSRAEIMLQQAAKLNCRSFLTPQDVVNGVYKLNLAFVANLFNNHP
GLDKPEQIEGLESIEETREEKTYRNWMNSMGVAPHVNWLYSDLADGLVIF
QLFDVIKPGIVNWSRVHKRFSPLRKFMEKLENCNYAVDLGKQLKFSLVGI
AGQDLNDGNATLTLALIWQLMRAYTLSILSRLANTGNPIIEKEIVQWVNN
RLSEAGKQSQLRNFNDPAIADGKIVIDLIDAIKEGSINYELVRTSGTQED
NLANAKYAISMARKIGARVYALPEDITEVKPKMVMTVFACMMALDYVPNM
DSVDQNNHNSSANNSN*

FI20019.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22618-PA 651 GF22618-PA 27..637 2..612 3198 97.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18187-PA 641 GG18187-PA 27..641 2..616 3275 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17670-PA 639 GH17670-PA 26..639 2..616 3182 96.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-PC 616 CG8649-PC 1..616 1..616 3169 100 Plus
Fim-PD 641 CG8649-PD 27..641 2..616 3164 100 Plus
Fim-PA 640 CG8649-PA 26..640 2..616 3164 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11134-PA 640 GI11134-PA 27..640 2..616 3160 96.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19835-PA 645 GL19835-PA 26..645 2..616 3194 96.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21237-PA 645 GA21237-PA 26..645 2..616 3197 96.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13322-PA 641 GM13322-PA 27..641 2..616 3274 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15680-PA 582 GD15680-PA 1..582 34..616 2991 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19059-PA 637 GJ19059-PA 27..636 2..611 3174 97.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25227-PA 637 GK25227-PA 27..636 2..611 3178 97.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15602-PA 641 GE15602-PA 27..641 2..616 3270 99.7 Plus