Clone FI20020 Report

Search the DGRC for FI20020

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:200
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCG1814-RA
Protein status:FI20020.pep: gold
Sequenced Size:1828

Clone Sequence Records

FI20020.complete Sequence

1828 bp assembled on 2012-03-21

GenBank Submission: BT133334.1

> FI20020.complete
GAGTCAGTTAAATGTGCGCGGCAGGCAGTCCCATCGTCAGTGCTCTCCTT
CGGCAGAATGTGCTCCTGCGAGCTGGTGGTGTCCTCCGGAGCTGGGACCC
CATCTCCTCCAGCCTGTCCCCCTCGCCGTGCAAACCAAACTATAGTTTCG
AGGCGCGCGCTTTCGCGTCGGACGCTGGAGCTTCCGCTCCAGCTGCAACC
GCCCAGATCTCGCACCCAAAAACAGTGAGTGATTTCCAAAAGCTTCACGA
AGCCACCAAAAAGAAGTTCCAATCCAAGAAGCTGCCCTCCGATGTGCATC
CAGATGCGGTCTTCGCCTGCAACGAGCTCGATCTCAGCGAGGTGCAGGTG
TACGGATTCGATTACGACTACACGCTGGCCTGCTATAAGCCCATCCTGGA
GGACCTGCTGTACAATCTGGCTCGCGAGATGCTGGTGAAGAGGTTCCGCT
ACCCGGAGGACATCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGC
GGCCTGCACTACGACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTT
CCTGCAGCTACAGCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGG
CGGATGAGGTGCTGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTAC
GTGGAGGGGCCGAACAATAGCTACAGGCATAACACCAACTCCAAAATGGT
GCAATTGGCCGACCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATG
TAATCGAATATTTTGAACGCAATCGAATCGACTACAATCCAGAGATTGTT
TTCCATGACACCAGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGG
CAAGGTGATGCGGAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGG
TCAAGTTCTTCGAGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTC
ACCAATAGCCCGTACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGG
CGCCAACTGGCGTGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAAC
CAAAGTTCTTTACGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGA
ACGCAGTCACACCTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAAT
CTACTACGAGGGTTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTG
GTCACTCTGTGCTCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGAT
GTTACTCTGAAGCACAGCTGGAGGACAGGAGCCATTATTAGCGAACTGGC
TCACGAAATTAAAACCCTCAATCGTAAGGACTTCAAGATGAGCGCCAACT
GGCTGCAAATGCTGACGCAGCTCATCGAGGACACCCAGGACGATGATAGC
GAGGCAGCGCAGATCTGCCTAAAGGAGTGGATGGAGGAGCGGGATCAGTT
GCGCAACAAAACGAAGAACGTGTTCAACGAGCAGTTTGGCAGCGTTTTCC
GCACCTACCACAACCCCACTTACTTCTCAAGACGCCTCTTCCGCTTTGCC
GACATCTACACCAGCGACATAACCAACCTGCTCAAGTTCTCCACCACCCA
CACCTTTTATCCCCGACGGGGTGTAATGCCCCACGAATATGCCTCCCACT
TTATCTAGAGAATTTGTGGGGACGAATGCCCGTTAGGAAGCTCAGATTAG
TTGTAGGTAACAAGAAGTGCCAGTGTTTAATGCTTGTAGCTCGAAACTAG
CGAATTTAATGCGTGTATATCGTTATTTACATTATTGCTCAATAAAATCG
TTGTAATAGTCCAAAAAAAAAAAAAAAA

FI20020.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5467458..5467861 274..677 2020 100 Plus
chr2R 21145070 chr2R 5468980..5469337 1453..1810 1790 100 Plus
chr2R 21145070 chr2R 5467946..5468242 677..973 1485 100 Plus
chr2R 21145070 chr2R 5467060..5467331 2..273 1360 100 Plus
chr2R 21145070 chr2R 5468313..5468500 974..1161 940 100 Plus
chr2R 21145070 chr2R 5468761..5468912 1302..1453 760 100 Plus
chr2R 21145070 chr2R 5468559..5468701 1159..1301 715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9579963..9580366 274..677 2020 100 Plus
2R 25286936 2R 9581485..9581851 1453..1819 1805 99.5 Plus
2R 25286936 2R 9580451..9580747 677..973 1485 100 Plus
2R 25286936 2R 9579565..9579836 2..273 1360 100 Plus
2R 25286936 2R 9580818..9581005 974..1161 940 100 Plus
2R 25286936 2R 9581266..9581417 1302..1453 760 100 Plus
2R 25286936 2R 9581064..9581206 1159..1301 715 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:04:48 has no hits.

FI20020.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:05:45 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5467947..5468242 678..973 100 -> Plus
chr2R 5468313..5468499 974..1160 100 -> Plus
chr2R 5468561..5468701 1161..1301 100 -> Plus
chr2R 5468761..5468912 1302..1453 100 -> Plus
chr2R 5467058..5467331 1..273 99 -> Plus
chr2R 5467458..5467861 274..677 100 -> Plus
chr2R 5468981..5469339 1454..1812 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-21 19:20:40 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 1..1647 12..1658 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:57:03 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 1..1647 12..1658 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:21:11 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 1..1647 12..1658 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-21 19:20:40 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 112..1924 1..1812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:57:03 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 114..1926 1..1812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:21:11 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 114..1926 1..1812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:45 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9579563..9579836 1..273 99 -> Plus
2R 9579963..9580366 274..677 100 -> Plus
2R 9580452..9580747 678..973 100 -> Plus
2R 9580818..9581004 974..1160 100 -> Plus
2R 9581066..9581206 1161..1301 100 -> Plus
2R 9581266..9581417 1302..1453 100 -> Plus
2R 9581486..9581844 1454..1812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:45 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9579563..9579836 1..273 99 -> Plus
2R 9579963..9580366 274..677 100 -> Plus
2R 9580452..9580747 678..973 100 -> Plus
2R 9580818..9581004 974..1160 100 -> Plus
2R 9581066..9581206 1161..1301 100 -> Plus
2R 9581266..9581417 1302..1453 100 -> Plus
2R 9581486..9581844 1454..1812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:45 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9579563..9579836 1..273 99 -> Plus
2R 9579963..9580366 274..677 100 -> Plus
2R 9580452..9580747 678..973 100 -> Plus
2R 9580818..9581004 974..1160 100 -> Plus
2R 9581066..9581206 1161..1301 100 -> Plus
2R 9581266..9581417 1302..1453 100 -> Plus
2R 9581486..9581844 1454..1812 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:57:03 Download gff for FI20020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5467068..5467341 1..273 99 -> Plus
arm_2R 5467468..5467871 274..677 100 -> Plus
arm_2R 5467957..5468252 678..973 100 -> Plus
arm_2R 5468323..5468509 974..1160 100 -> Plus
arm_2R 5468571..5468711 1161..1301 100 -> Plus
arm_2R 5468771..5468922 1302..1453 100 -> Plus
arm_2R 5468991..5469349 1454..1812 99   Plus

FI20020.hyp Sequence

Translation from 11 to 1657

> FI20020.hyp
MCAAGSPIVSALLRQNVLLRAGGVLRSWDPISSSLSPSPCKPNYSFEARA
FASDAGASAPAATAQISHPKTVSDFQKLHEATKKKFQSKKLPSDVHPDAV
FACNELDLSEVQVYGFDYDYTLACYKPILEDLLYNLAREMLVKRFRYPED
ILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVYRGRTKVEADEV
LKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVPEMCLLCNVIEY
FERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKYIERNPKLVKFF
EKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDVVIVQARKPKFF
TDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQLQELKGWRGHSV
LYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRKDFKMSANWLQM
LTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFNEQFGSVFRTYH
NPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVMPHEYASHFI*

FI20020.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PA 548 CG1814-PA 1..548 1..548 2903 100 Plus
CG1814-PC 462 CG1814-PC 2..462 88..548 2457 99.8 Plus
CG1814-PB 409 CG1814-PB 1..409 140..548 2182 100 Plus
CG32549-PD 581 CG32549-PD 29..481 100..542 491 29.8 Plus
CG32549-PF 612 CG32549-PF 60..512 100..542 491 29.8 Plus

FI20020.pep Sequence

Translation from 11 to 1657

> FI20020.pep
MCAAGSPIVSALLRQNVLLRAGGVLRSWDPISSSLSPSPCKPNYSFEARA
FASDAGASAPAATAQISHPKTVSDFQKLHEATKKKFQSKKLPSDVHPDAV
FACNELDLSEVQVYGFDYDYTLACYKPILEDLLYNLAREMLVKRFRYPED
ILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVYRGRTKVEADEV
LKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVPEMCLLCNVIEY
FERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKYIERNPKLVKFF
EKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDVVIVQARKPKFF
TDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQLQELKGWRGHSV
LYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRKDFKMSANWLQM
LTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFNEQFGSVFRTYH
NPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVMPHEYASHFI*

FI20020.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21341-PA 558 GF21341-PA 1..558 1..548 2648 88.1 Plus
Dana\GF22508-PA 378 GF22508-PA 29..360 100..420 394 30.9 Plus
Dana\GF10066-PA 536 GF10066-PA 107..454 105..432 237 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24086-PA 547 GG24086-PA 1..547 1..548 2866 96.7 Plus
Dere\GG18126-PA 713 GG18126-PA 162..614 100..542 493 29.6 Plus
Dere\GG14610-PA 534 GG14610-PA 106..452 105..432 269 26.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19932-PA 539 GH19932-PA 1..539 1..548 2517 84.9 Plus
Dgri\GH12351-PA 611 GH12351-PA 63..515 100..542 491 29.4 Plus
Dgri\GH16005-PA 445 GH16005-PA 7..354 105..429 271 25.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PA 548 CG1814-PA 1..548 1..548 2903 100 Plus
CG1814-PC 462 CG1814-PC 2..462 88..548 2457 99.8 Plus
CG1814-PB 409 CG1814-PB 1..409 140..548 2182 100 Plus
CG32549-PD 581 CG32549-PD 29..481 100..542 491 29.8 Plus
CG32549-PF 612 CG32549-PF 60..512 100..542 491 29.8 Plus
CG32549-PB 612 CG32549-PB 60..512 100..542 491 29.8 Plus
CG32549-PE 630 CG32549-PE 78..530 100..542 491 29.8 Plus
CG32549-PH 709 CG32549-PH 157..609 100..542 491 29.8 Plus
CG32549-PG 709 CG32549-PG 157..609 100..542 491 29.8 Plus
CG2277-PC 435 CG2277-PC 7..353 105..432 267 25.4 Plus
CG2277-PB 534 CG2277-PB 106..452 105..432 267 25.4 Plus
CG2277-PA 534 CG2277-PA 106..452 105..432 267 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19889-PA 537 GI19889-PA 1..537 1..548 2495 85.9 Plus
Dmoj\GI15598-PA 639 GI15598-PA 77..529 100..542 501 29.8 Plus
Dmoj\GI12272-PA 444 GI12272-PA 5..367 103..445 251 25.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17171-PA 499 GL17171-PA 39..499 88..548 2411 95.9 Plus
Dper\GL27036-PA 510 GL27036-PA 31..413 187..542 338 26.6 Plus
Dper\GL16077-PA 387 GL16077-PA 34..301 191..434 165 23.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25020-PB 551 GA25020-PB 1..551 1..548 2604 87 Plus
Dpse\GA25020-PC 409 GA25020-PC 1..409 140..548 2144 95.8 Plus
Dpse\GA22323-PA 576 GA22323-PA 27..479 100..542 500 29.6 Plus
Dpse\GA15339-PA 445 GA15339-PA 5..359 103..434 261 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21134-PA 481 GM21134-PA 1..481 1..481 2587 99 Plus
Dsec\GM22819-PA 637 GM22819-PA 86..538 100..542 494 29.6 Plus
Dsec\GM14224-PA 532 GM14224-PA 104..450 105..432 266 25.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10664-PA 548 GD10664-PA 1..548 1..548 2964 99.6 Plus
Dsim\GD15638-PA 403 GD15638-PA 4..349 99..433 418 31.4 Plus
Dsim\GD13486-PA 534 GD13486-PA 106..452 105..432 263 26 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15059-PA 538 GJ15059-PA 1..538 1..548 2533 85.7 Plus
Dvir\GJ15201-PA 634 GJ15201-PA 52..504 100..542 497 29.6 Plus
Dvir\GJ13208-PA 444 GJ13208-PA 5..367 103..445 232 24.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21823-PA 537 GK21823-PA 1..537 1..548 2464 84.5 Plus
Dwil\GK25265-PA 607 GK25265-PA 61..513 100..542 503 29.6 Plus
Dwil\GK20501-PA 430 GK20501-PA 5..428 103..545 260 24.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19287-PA 547 GE19287-PA 1..547 1..548 2897 97.8 Plus
Dyak\GE15532-PA 712 GE15532-PA 161..613 100..542 495 29.6 Plus
Dyak\GE20971-PA 535 GE20971-PA 60..453 55..432 273 25.6 Plus