Clone FI20106 Report

Search the DGRC for FI20106

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:201
Well:6
Vector:pFlc-1
Associated Gene/TranscriptSu(var)3-9-RA
Protein status:FI20106.pep: gold
Sequenced Size:2395

Clone Sequence Records

FI20106.complete Sequence

2395 bp assembled on 2012-04-17

GenBank Submission: BT133458.1

> FI20106.complete
TCTTCGATATCGAGATTTGATGCCGAGCTGTAATAGCTGAAAATTATTAT
TTTCATTTTGCATACGCATCGTTTTTGAAAACATCAGCAACATGGCCACG
GCTGAAGCCCAGATCGGTGTGAACAGGAACTTGCAGAAGCAGGACCTCAG
CAACTTGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCCC
GACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAAA
TCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGAA
CGAACTGGAGCGCAACATCACAATCAAGCTGGAACGCTTGAGCGAAAAAA
AAATCAAAAATCTTTTGACCTCCAAGCAGCAGCGACAGCAGTATGAAATC
AAACAGCGTTCAATGCTGCGCCACCTGGCCGAATTGCGGCGACATAGCCG
ATTCCGCCGCCTCTGCACCAAGCCAGCTTCGTCTTCCATGCCAGCATCCA
CCTCCAGTGTAGATAGACGCACCACCCGGCGAAGCACCAGTCAGACCTCA
CTGAGTCCAAGCAATAGTAGCGGCTATGGCAGCGTTTTTGGCTGCGAGGA
ACATGATGTGGACAAAATACCCAGTCTCAACGGATTCGCCAAACTGAAGC
GTCGACGCAGCAGTTGTGTGGGCGCCCCAACTCCCAACTCCAAGCGGTCG
AAAAATAACATGGGAGTAATTGCCAAAAGGCCGCCCAAAGGAGAGTACGT
TGTGGAGCGTATTGAATGCGTCGAGATGGATCAATATCAGCCAGTCTTCT
TCGTCAAATGGCTGGGATACCATGATAGCGAGAACACCTGGGAAAGTCTT
GCCAACGTGGCCGACTGCGCCGAAATGGAGAAGTTTGTGGAGCGGCATCA
GCAGCTCTACGAGATATACATAGCCAAGATAACCACTGAGCTTGAGAAGC
AGCTGGAGGCATTGCCACTAATGGAGAACATTACGGTGGCCGAAGTAGAC
GCCTATGAGCCACTCAATCTGCAGATCGATCTTATACTGCTCGCCCAATA
TCGCGCTGCTGGCAGTCGAAGCCAAAGGGAACCGCAGAAAATTGGAGAAC
GAGCCCTGAAAAGCATGCAAATCAAGCGGGCCCAATTTGTACGACGCAAG
CAGTTGGCTGATCTAGCATTGTTCGAGAAGCGCATGAATCATGTGGAGAA
ACCGTCACCGCCAATACGTGTTGAGAACAACATTGATCTGGACACCATAG
ACAGCAATTTCATGTACATACATGATAACATAATCGGCAAGGATGTGCCC
AAGCCGGAAGCGGGGATTGTGGGCTGTAAGTGCACTGAAGACACAGAGGA
GTGTACTGCCTCTACGAAGTGTTGTGCCCGCTTCGCCGGCGAGCTGTTCG
CCTACGAGCGAAGCACACGGCGCTTGCGCCTTCGTCCCGGAAGTGCCATC
TATGAGTGCAATAGCCGCTGCTCGTGCGATTCAAGCTGCTCCAACCGTCT
GGTGCAGCACGGACGCCAGGTACCGTTGGTGCTGTTTAAGACCGCCAACG
GCAGCGGATGGGGGGTGCGAGCCGCAACTGCCTTGCGTAAGGGTGAATTT
GTGTGCGAGTACATTGGAGAGATCATCACCAGCGATGAGGCAAATGAGCG
CGGCAAGGCGTATGACGACAATGGGAGGACATATCTGTTCGACTTGGATT
ACAACACAGCTCAGGATAGCGAGTACACTATCGATGCAGCTAACTATGGC
AACATCTCGCACTTTATCAATCACTCTTGCGATCCTAATCTCGCCGTGTT
CCCCTGTTGGATCGAGCACCTGAATGTCGCGCTGCCGCACCTCGTGTTCT
TCACACTGCGTCCAATCAAGGCGGGCGAGGAGTTGAGCTTCGACTACATT
CGCGCGGACAACGAAGATGTGCCCTACGAGAACCTCTCGACAGCTGTGCG
TGTCGAGTGCCGCTGCGGAGCTGATAATTGCAGAAAGGTCCTCTTTTGAA
TGGACTTGAAGTACTATATTTAAATGGCACGCCGTTACCCACCTGAGACA
TCATTGCATTGAACCTTTTTTTTTTTTGTTAACATATATATATATTACTA
GTTGGATTTTATATTCCGACGTTTTAATTATTTATTTGTTAATAAATGCT
AATATCGATATATTGGATCTATATTATGTTTGAGGATCTATATTACTAGA
GGATAAAACGAGTAATTCTATATAGTTTGTACTTGTATACATTTCATAAA
CTTAAATTTTAATTTAGTAATAACTTAGTGTTTTGACAAACAACCTTGTA
ATGTGCTGAAATTATTACCGCATTAAGTGCAAATTATTATTTTACAATAA
ATATTTTACGATTATTAAAAAAAAAAAAAGAAAAAAAAAAAAAAA

FI20106.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11084492..11086528 2368..332 10185 100 Minus
chr3R 27901430 chr3R 11087177..11087352 332..157 880 100 Minus
chr3R 27901430 chr3R 11087911..11088068 158..1 790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15259862..15261898 2368..332 10185 100 Minus
3R 32079331 3R 15262547..15262722 332..157 880 100 Minus
3R 32079331 3R 15263281..15263438 158..1 790 100 Minus
Blast to na_te.dros performed 2019-03-15 13:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 399..513 2297..2184 140 59.1 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1047..1256 2265..2053 138 55.6 Minus

FI20106.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:45:40 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11084534..11086527 333..2326 100 <- Minus
chr3R 11087177..11087351 158..332 100 <- Minus
chr3R 11087912..11088068 1..157 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-17 17:25:34 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RA 1..1908 92..1999 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:11:43 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RA 1..1908 92..1999 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:40:20 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RA 1..1908 92..1999 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-17 17:25:33 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RA 37..2402 1..2366 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:11:43 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RA 21..2386 1..2366 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:40:20 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RA 21..2386 1..2366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:40 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15259864..15261897 333..2366 100 <- Minus
3R 15262547..15262721 158..332 100 <- Minus
3R 15263282..15263438 1..157 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:40 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15259864..15261897 333..2366 100 <- Minus
3R 15262547..15262721 158..332 100 <- Minus
3R 15263282..15263438 1..157 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:40 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15259864..15261897 333..2366 100 <- Minus
3R 15262547..15262721 158..332 100 <- Minus
3R 15263282..15263438 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:11:43 Download gff for FI20106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11085586..11087619 333..2366 100 <- Minus
arm_3R 11088269..11088443 158..332 100 <- Minus
arm_3R 11089004..11089160 1..157 100   Minus

FI20106.hyp Sequence

Translation from 91 to 1998

> FI20106.hyp
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLERLSEKKIKNLLTSKQQRQQ
YEIKQRSMLRHLAELRRHSRFRRLCTKPASSSMPASTSSVDRRTTRRSTS
QTSLSPSNSSGYGSVFGCEEHDVDKIPSLNGFAKLKRRRSSCVGAPTPNS
KRSKNNMGVIAKRPPKGEYVVERIECVEMDQYQPVFFVKWLGYHDSENTW
ESLANVADCAEMEKFVERHQQLYEIYIAKITTELEKQLEALPLMENITVA
EVDAYEPLNLQIDLILLAQYRAAGSRSQREPQKIGERALKSMQIKRAQFV
RRKQLADLALFEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHDNIIGK
DVPKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPG
SAIYECNSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRK
GEFVCEYIGEIITSDEANERGKAYDDNGRTYLFDLDYNTAQDSEYTIDAA
NYGNISHFINHSCDPNLAVFPCWIEHLNVALPHLVFFTLRPIKAGEELSF
DYIRADNEDVPYENLSTAVRVECRCGADNCRKVLF*

FI20106.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-9-PA 635 CG43664-PA 1..635 1..635 3304 100 Plus
eIF-2gamma-PD 475 CG43665-PD 1..89 1..89 390 92.1 Plus
eIF-2gamma-PB 475 CG43665-PB 1..89 1..89 390 92.1 Plus
G9a-PA 1637 CG2995-PA 1360..1600 378..631 313 32 Plus
G9a-PB 1657 CG2995-PB 1380..1620 378..631 313 32 Plus

FI20106.pep Sequence

Translation from 91 to 1998

> FI20106.pep
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLERLSEKKIKNLLTSKQQRQQ
YEIKQRSMLRHLAELRRHSRFRRLCTKPASSSMPASTSSVDRRTTRRSTS
QTSLSPSNSSGYGSVFGCEEHDVDKIPSLNGFAKLKRRRSSCVGAPTPNS
KRSKNNMGVIAKRPPKGEYVVERIECVEMDQYQPVFFVKWLGYHDSENTW
ESLANVADCAEMEKFVERHQQLYEIYIAKITTELEKQLEALPLMENITVA
EVDAYEPLNLQIDLILLAQYRAAGSRSQREPQKIGERALKSMQIKRAQFV
RRKQLADLALFEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHDNIIGK
DVPKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPG
SAIYECNSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRK
GEFVCEYIGEIITSDEANERGKAYDDNGRTYLFDLDYNTAQDSEYTIDAA
NYGNISHFINHSCDPNLAVFPCWIEHLNVALPHLVFFTLRPIKAGEELSF
DYIRADNEDVPYENLSTAVRVECRCGADNCRKVLF*

FI20106.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11769-PA 1020 GF11769-PA 1..626 1..624 2495 79.9 Plus
Dana\GF21998-PA 1751 GF21998-PA 1541..1696 437..602 325 41.7 Plus
Dana\GF22528-PA 2414 GF22528-PA 1400..1560 453..631 252 36.7 Plus
Dana\GF23825-PA 751 GF23825-PA 553..750 421..621 233 31.1 Plus
Dana\GF11546-PA 841 GF11546-PA 568..658 443..537 226 46.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\eIF2gamma-PA 475 GG20759-PA 1..80 1..80 402 100 Plus
Dere\GG12774-PA 1646 GG12774-PA 1445..1586 451..602 323 43.5 Plus
Dere\GG17783-PA 2384 GG17783-PA 1391..1551 453..631 260 36.7 Plus
Dere\GG13968-PA 761 GG13968-PA 563..760 421..621 234 31.1 Plus
Dere\GG13392-PA 2215 GG13392-PA 1355..1518 455..634 228 32.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18750-PA 1035 GH18750-PA 1..633 1..622 2023 64.8 Plus
Dgri\GH24232-PA 1940 GH24232-PA 1742..1883 451..602 329 44.8 Plus
Dgri\GH16034-PA 2059 GH16034-PA 1134..1294 453..631 257 36.1 Plus
Dgri\GH21540-PA 1378 GH21540-PA 1060..1195 406..537 241 38.6 Plus
Dgri\GH16544-PA 762 GH16544-PA 564..761 421..621 234 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-9-PA 635 CG43664-PA 1..635 1..635 3304 100 Plus
eIF2gamma-PD 475 CG43665-PD 1..89 1..89 390 92.1 Plus
eIF2gamma-PB 475 CG43665-PB 1..89 1..89 390 92.1 Plus
G9a-PA 1637 CG2995-PA 1360..1600 378..631 313 32 Plus
G9a-PB 1657 CG2995-PB 1380..1620 378..631 313 32 Plus
eIF2gamma-PC 467 CG43665-PC 15..81 23..89 284 89.6 Plus
Set2-PB 2313 CG1716-PB 1340..1498 455..631 243 36.5 Plus
Set2-PA 2362 CG1716-PA 1389..1547 455..631 243 36.5 Plus
E(z)-PB 760 CG6502-PB 547..759 410..621 235 30 Plus
E(z)-PA 760 CG6502-PA 547..759 410..621 235 30 Plus
E(z)-PC 765 CG6502-PC 552..764 410..621 235 30 Plus
CG4565-PB 269 CG4565-PB 50..258 412..630 231 30.1 Plus
egg-PA 1262 CG12196-PA 942..1077 406..537 220 36.4 Plus
ash1-PC 2226 CG8887-PC 1366..1529 455..634 216 32.1 Plus
ash1-PB 2226 CG8887-PB 1366..1529 455..634 216 32.1 Plus
trr-PC 2410 CG3848-PC 2281..2407 489..632 202 36.3 Plus
trr-PD 2431 CG3848-PD 2302..2428 489..632 202 36.3 Plus
Set1-PI 1641 CG40351-PI 1514..1640 490..634 181 32.4 Plus
Set1-PH 1641 CG40351-PH 1514..1640 490..634 181 32.4 Plus
Set1-PG 1641 CG40351-PG 1514..1640 490..634 181 32.4 Plus
Set1-PF 1641 CG40351-PF 1514..1640 490..634 181 32.4 Plus
Set1-PE 1641 CG40351-PE 1514..1640 490..634 181 32.4 Plus
Set1-PD 1641 CG40351-PD 1514..1640 490..634 181 32.4 Plus
Set1-PB 1641 CG40351-PB 1514..1640 490..634 181 32.4 Plus
Set1-PC 1641 CG40351-PC 1514..1640 490..634 181 32.4 Plus
Set1-PA 1641 CG40351-PA 1514..1640 490..634 181 32.4 Plus
PR-Set7-PD 691 CG3307-PD 564..675 487..602 165 37.8 Plus
PR-Set7-PB 691 CG3307-PB 564..675 487..602 165 37.8 Plus
PR-Set7-PA 691 CG3307-PA 564..675 487..602 165 37.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24667-PA 1017 GI24667-PA 1..628 1..631 2160 65.5 Plus
Dmoj\GI21426-PA 1905 GI21426-PA 1700..1841 451..602 326 44.2 Plus
Dmoj\GI12297-PA 1972 GI12297-PA 1025..1185 453..631 254 36.1 Plus
Dmoj\GI19513-PA 838 GI19513-PA 520..655 406..537 239 40 Plus
Dmoj\GI13833-PA 741 GI13833-PA 543..731 421..612 233 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12073-PA 1004 GL12073-PA 1..625 1..627 2307 72.3 Plus
Dper\GL13363-PA 1818 GL13363-PA 1547..1787 378..631 334 33.7 Plus
Dper\GL27000-PA 944 GL27000-PA 29..189 453..631 238 36.7 Plus
Dper\GL15590-PA 749 GL15590-PA 536..748 410..621 232 30 Plus
Dper\GL20883-PA 2266 GL20883-PA 1406..1569 455..634 231 31.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19622-PC 633 GA19622-PC 1..633 1..635 2365 73.1 Plus
Dpse\GA19622-PB 473 GA19622-PB 1..80 1..80 377 93.8 Plus
Dpse\GA15565-PA 1811 GA15565-PA 1540..1780 378..631 334 33.3 Plus
Dpse\GA14357-PA 2918 GA14357-PA 1887..2047 453..631 240 36.7 Plus
Dpse\GA19644-PA 749 GA19644-PA 536..748 410..621 232 30 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25792-PA 1024 GM25792-PA 1..630 1..630 3018 95.1 Plus
Dsec\GM19051-PA 1619 GM19051-PA 1420..1575 437..602 327 41.7 Plus
Dsec\GM11634-PA 1965 GM11634-PA 1243..1403 453..631 260 37.9 Plus
Dsec\GM24804-PA 753 GM24804-PA 555..752 421..621 234 31.1 Plus
Dsec\GM17444-PA 2218 GM17444-PA 1357..1520 455..634 228 32.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20368-PA 1024 GD20368-PA 1..630 1..630 2983 95.4 Plus
Dsim\GD17127-PA 2246 GD17127-PA 1338..1478 453..602 257 39.7 Plus
Dsim\GD12857-PA 675 GD12857-PA 529..674 465..621 227 34.2 Plus
Dsim\GD20433-PA 152 GD20433-PA 25..151 489..634 206 34.5 Plus
Dsim\GD16408-PA 1076 GD16408-PA 947..1075 489..634 197 35.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24041-PA 1044 GJ24041-PA 1..641 1..632 2132 66.6 Plus
Dvir\GJ16443-PA 1939 GJ16443-PA 1736..1877 451..602 327 44.2 Plus
Dvir\GJ13235-PA 2005 GJ13235-PA 1049..1209 453..631 247 35.6 Plus
Dvir\GJ21082-PA 1346 GJ21082-PA 1043..1178 406..537 244 40 Plus
Dvir\GJ19006-PA 2101 GJ19006-PA 1038..1198 453..631 238 36.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12089-PA 1007 GK12089-PA 1..613 1..620 2028 65.3 Plus
Dwil\GK25046-PA 589 GK25046-PA 22..589 75..635 1318 48.4 Plus
Dwil\GK24998-PA 1904 GK24998-PA 1700..1841 451..602 324 42.2 Plus
Dwil\GK13904-PA 267 GK13904-PA 46..262 418..634 262 33.2 Plus
Dwil\GK21652-PA 842 GK21652-PA 522..657 406..537 247 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26397-PA 1026 GE26397-PA 1..632 1..630 2964 89.6 Plus
Dyak\GE16600-PA 1644 GE16600-PA 1431..1609 437..631 325 38.1 Plus
Dyak\GE17076-PA 2397 GE17076-PA 1404..1564 453..631 261 36.7 Plus
Dyak\GE20265-PA 760 GE20265-PA 562..759 421..621 234 31.1 Plus
Dyak\GE22484-PA 2215 GE22484-PA 1355..1518 455..634 228 32.1 Plus