Clone FI20108 Report

Search the DGRC for FI20108

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:201
Well:8
Vector:pFlc-1
Associated Gene/TranscriptProsalpha6-RA
Protein status:FI20108.pep: gold
Sequenced Size:1041

Clone Sequence Records

FI20108.complete Sequence

1041 bp assembled on 2012-04-17

GenBank Submission: BT133448.1

> FI20108.complete
AGTTTGTTTGTGTCTCCCGGCGTGCCATAACTAACTATCGGGCATTTCTA
CTTGTCATCATTGAGCTCAGCGGCTTGCATTTCAAAAGTCATGTTTCGCA
ACCAGTACGATAGCGATGTTACTGTGTGGAGTCCGCAGGGACGTCTCCAC
CAGGTGGAGTACGCAATGGAGGCCGTGAAACTTGGCACCGCAACCGTGGG
CCTGAAAAATAAAGATTACGCTGTACTTGTCGCCCTGTGTAAGCCGACAT
CGGAGCTATCGGATACCCAGCGCAAGATCATCCCAATCGACGATCACCTG
GGCATTTCCATTGCTGGCCTCACGGCTGATGCCCGCGTCCTTAGCCGGTA
CTTGCGCTCCGAGTGCCTGAACTACAAGCACTCGTACGATACAACCTATC
CAGTCTCGCGTCTGATCACTAACCTGGGCAACAAGATGCAGACGACCACT
CAGCGCTACGATCGCCGTCCGTATGGAGTGGGCCTTTTGGTCGCCGGCTA
CGATGAGAGGGGTCCGCACATCTATCAGGTCACGCCATCGGCGACCTTTT
TCAATTGCAAGGCCAATTCGATCGGATCGCGTTCACAGAGTGCACGCACC
TATCTGGAGAAGAATTTGAACAAGTTCTTGGACAGTTCCAAAGATGAAAT
CATCCGTCACGGAATTCGCGCTATACTCGGTACCCTGCCTACGGATGAGC
AAGGCAAAGATGCCGGTCAGTATGACATCACTGTGGCCATCGTCGGCAAA
GACCAGCCATTCACAATTCTCTCTAATAAAGACAGCGCCAAGCATGTGGC
GATTGCCAAAGAGAATGACAATGATACGCCCAGGAACGACGATGACGATG
ATCGCCCATCCCCCCCAGAGGAACCAGCAGCCGGACCACGCGACCCAGAA
GTCCTGGTTGCAACCGAGCAGCGTCCATAGGCATTTATAGGGCTATGAAA
GCATCTTAACCATTAAAAATGTAAGATTCAAGGATACAATAAAATTGTTC
ATGCATTTGCATAGATCCTAAAACGAAAAAAAAAAAAAAAA

FI20108.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10220364..10220995 93..724 3160 100 Plus
chr2L 23010047 chr2L 10221053..10221354 724..1025 1510 100 Plus
chr2L 23010047 chr2L 10220204..10220296 1..93 465 100 Plus
chr2L 23010047 chr2L 13230816..13231298 127..609 315 71 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10221513..10222144 93..724 3160 100 Plus
2L 23513712 2L 10222202..10222510 724..1032 1515 99.4 Plus
2L 23513712 2L 10221353..10221445 1..93 465 100 Plus
2L 23513712 2L 13232144..13232626 127..609 315 71 Plus
Blast to na_te.dros performed on 2019-03-15 13:44:58 has no hits.

FI20108.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:45:43 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10220204..10220296 1..93 100 -> Plus
chr2L 10220365..10220994 94..723 100 -> Plus
chr2L 10221053..10221354 724..1025 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-17 17:25:35 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
Pros35-RA 1..840 91..930 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:11:50 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6-RB 1..840 91..930 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:40:27 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6-RB 1..840 91..930 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-17 17:25:34 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
Pros35-RA 1..1025 1..1025 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:11:50 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6-RB 3..1027 1..1025 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:40:27 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6-RB 3..1027 1..1025 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:43 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10221353..10221445 1..93 100 -> Plus
2L 10221514..10222143 94..723 100 -> Plus
2L 10222202..10222503 724..1025 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:43 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10221353..10221445 1..93 100 -> Plus
2L 10221514..10222143 94..723 100 -> Plus
2L 10222202..10222503 724..1025 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:43 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10221353..10221445 1..93 100 -> Plus
2L 10221514..10222143 94..723 100 -> Plus
2L 10222202..10222503 724..1025 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:11:50 Download gff for FI20108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10221353..10221445 1..93 100 -> Plus
arm_2L 10221514..10222143 94..723 100 -> Plus
arm_2L 10222202..10222503 724..1025 100   Plus

FI20108.hyp Sequence

Translation from 90 to 929

> FI20108.hyp
MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALC
KPTSELSDTQRKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYD
TTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPS
ATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLP
TDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAKHVAIAKENDNDTPRND
DDDDRPSPPEEPAAGPRDPEVLVATEQRP*

FI20108.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6-PA 279 CG4904-PA 1..279 1..279 1456 100 Plus
Prosalpha6-PB 279 CG4904-PB 1..279 1..279 1456 100 Plus
Prosalpha6T-PA 289 CG5648-PA 1..280 1..275 827 57.7 Plus
Prosalpha4T2-PB 252 CG4569-PB 4..226 5..230 322 31.7 Plus
Prosalpha4T2-PA 252 CG4569-PA 4..226 5..230 322 31.7 Plus

FI20108.pep Sequence

Translation from 90 to 929

> FI20108.pep
MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALC
KPTSELSDTQRKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYD
TTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPS
ATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLP
TDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAKHVAIAKENDNDTPRND
DDDDRPSPPEEPAAGPRDPEVLVATEQRP*

FI20108.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15751-PA 285 GF15751-PA 3..284 2..278 1114 76.6 Plus
Dana\GF23090-PA 317 GF23090-PA 1..256 1..257 862 60.7 Plus
Dana\GF19028-PA 249 GF19028-PA 3..231 4..236 370 35.6 Plus
Dana\GF11246-PA 252 GF11246-PA 4..223 5..227 341 35 Plus
Dana\GF12213-PA 265 GF12213-PA 4..179 5..176 301 37.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10092-PA 282 GG10092-PA 1..282 1..279 1266 85.8 Plus
Dere\GG23827-PA 289 GG23827-PA 1..236 1..240 830 62.1 Plus
Dere\GG19922-PA 252 GG19922-PA 4..226 5..230 329 34.1 Plus
Dere\GG17945-PA 249 GG17945-PA 3..231 4..236 328 33.5 Plus
Dere\GG15180-PA 251 GG15180-PA 3..245 4..249 314 30 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13363-PA 288 GH13363-PA 1..288 1..279 1029 71.9 Plus
Dgri\GH10812-PA 256 GH10812-PA 1..225 1..231 766 61.2 Plus
Dgri\GH20892-PA 254 GH20892-PA 5..241 6..245 353 35.4 Plus
Dgri\GH12557-PA 249 GH12557-PA 3..222 4..227 328 33.9 Plus
Dgri\GH20521-PA 263 GH20521-PA 4..196 5..189 309 36.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6-PA 279 CG4904-PA 1..279 1..279 1456 100 Plus
Prosalpha6-PB 279 CG4904-PB 1..279 1..279 1456 100 Plus
Prosalpha6T-PA 289 CG5648-PA 1..280 1..275 827 57.7 Plus
Prosalpha4T2-PB 252 CG4569-PB 4..226 5..230 322 31.7 Plus
Prosalpha4T2-PA 252 CG4569-PA 4..226 5..230 322 31.7 Plus
Prosalpha4-PA 249 CG3422-PA 3..240 4..245 318 30.2 Plus
Prosalpha3-PA 264 CG9327-PA 4..179 5..176 297 38.1 Plus
Prosalpha1-PB 244 CG18495-PB 9..244 6..243 281 30.9 Plus
Prosalpha1-PA 244 CG18495-PA 9..244 6..243 281 30.9 Plus
CG30382-PB 244 CG30382-PB 9..244 6..243 281 30.9 Plus
CG30382-PA 244 CG30382-PA 9..244 6..243 281 30.9 Plus
Prosalpha5-PB 244 CG10938-PB 5..240 3..236 281 30.5 Plus
Prosalpha5-PA 244 CG10938-PA 5..240 3..236 281 30.5 Plus
Prosalpha4T1-PA 249 CG17268-PA 3..224 4..229 276 30.1 Plus
Prosalpha2-PA 234 CG5266-PA 1..183 1..181 265 32.8 Plus
Prosalpha3T-PA 251 CG1736-PA 5..178 6..176 257 37.7 Plus
Prosalpha7-PA 253 CG1519-PA 8..190 6..188 251 30.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18287-PA 287 GI18287-PA 5..285 2..277 1050 71.5 Plus
Dmoj\GI17321-PA 295 GI17321-PA 1..276 1..279 807 57.3 Plus
Dmoj\GI21349-PA 189 GI21349-PA 15..179 45..209 709 79.4 Plus
Dmoj\GI11210-PA 249 GI11210-PA 3..233 4..238 344 34.4 Plus
Dmoj\GI18902-PA 253 GI18902-PA 4..240 6..245 335 35.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18993-PA 281 GL18993-PA 1..281 1..277 1110 75.5 Plus
Dper\GL26311-PA 277 GL26311-PA 1..262 1..269 835 59.9 Plus
Dper\GL24418-PA 225 GL24418-PA 3..215 62..259 486 46.5 Plus
Dper\GL20413-PA 252 GL20413-PA 3..232 4..236 333 32.1 Plus
Dper\GL10139-PA 262 GL10139-PA 4..179 5..176 303 37.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19030-PA 277 GA19030-PA 1..262 1..269 835 59.9 Plus
Dpse\GA30476-PA 262 GA30476-PA 1..243 1..246 600 48.6 Plus
Dpse\GA23615-PA 253 GA23615-PA 1..246 26..258 547 47.6 Plus
Dpse\GA17441-PA 249 GA17441-PA 3..222 4..227 336 32.6 Plus
Dpse\GA25111-PA 252 GA25111-PA 3..232 4..236 333 32.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18005-PA 281 GM18005-PA 1..281 1..279 1294 94.3 Plus
Dsec\GM10300-PA 270 GM10300-PA 1..203 1..203 798 68 Plus
Dsec\Pros28.1B-PA 252 GM11825-PA 3..226 4..230 330 31.6 Plus
Dsec\GM21770-PA 244 GM21770-PA 1..240 1..236 306 32 Plus
Dsec\GM15792-PA 264 GM15792-PA 4..179 5..176 306 38.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23664-PA 281 GD23664-PA 1..281 1..279 1287 94.7 Plus
Dsim\GD23876-PA 289 GD23876-PA 1..273 1..268 859 58.5 Plus
Dsim\Pros28.1B-PA 252 GD24946-PA 3..199 4..196 328 35 Plus
Dsim\GD11553-PA 264 GD11553-PA 4..179 5..176 306 38.1 Plus
Dsim\GD11263-PA 244 GD11263-PA 1..240 1..236 304 32 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15428-PA 286 GJ15428-PA 1..284 1..277 1042 71.2 Plus
Dvir\GJ15897-PA 273 GJ15897-PA 1..229 1..235 786 61.7 Plus
Dvir\GJ20726-PA 251 GJ20726-PA 5..240 6..245 368 37.3 Plus
Dvir\Pros28.1-PA 249 GJ18504-PA 3..233 4..238 344 34.4 Plus
Dvir\Pros28.1B-PA 251 GJ19357-PA 2..222 4..227 326 34.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23128-PA 249 GK23128-PA 1..202 2..203 925 83.7 Plus
Dwil\GK14549-PA 296 GK14549-PA 1..235 1..240 845 63.9 Plus
Dwil\GK25669-PA 249 GK25669-PA 4..222 5..227 328 34.1 Plus
Dwil\GK19681-PA 255 GK19681-PA 4..240 5..243 320 32.9 Plus
Dwil\GK22956-PA 262 GK22956-PA 4..196 5..189 307 36.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Pros35-PA 286 GE18906-PA 5..286 2..279 1180 84 Plus
Dyak\GE18630-PA 289 GE18630-PA 1..239 1..243 837 62.1 Plus
Dyak\GE11446-PA 252 GE11446-PA 3..226 4..230 336 34.3 Plus
Dyak\GE17253-PA 249 GE17253-PA 3..231 4..236 334 33.9 Plus
Dyak\GE25043-PA 251 GE25043-PA 3..244 4..248 317 30.9 Plus